RNA–Protein interactions for RNA: ENST00000597968.1

TRIM28-211, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 504 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-211ENST00000597968 IGFL4Q6B9Z1 124 aa9.61□□□□□ -0.87
TRIM28-211ENST00000597968 LCN15Q6UWW0 184 aa9.61□□□□□ -0.87
TRIM28-211ENST00000597968 ZNF546Q86UE3 836 aa9.61□□□□□ -0.87
TRIM28-211ENST00000597968 OR8A1Q8NGG7 326 aa9.61□□□□□ -0.87
TRIM28-211ENST00000597968 C16orf74Q96GX8 76 aa9.61□□□□□ -0.87
TRIM28-211ENST00000597968 SLC50A1Q9BRV3 221 aa9.61□□□□□ -0.87
TRIM28-211ENST00000597968 GSKIPQ9P0R6 139 aa9.61□□□□□ -0.87
TRIM28-211ENST00000597968 MGAT4CQ9UBM8 478 aa9.61□□□□□ -0.87
TRIM28-211ENST00000597968 M0R2Z0 102 aa9.6□□□□□ -0.87
TRIM28-211ENST00000597968 SCGB1D2O95969 90 aa9.6□□□□□ -0.87
TRIM28-211ENST00000597968 ATP5G1P05496 136 aa9.6□□□□□ -0.87
TRIM28-211ENST00000597968 OR5G3P0C626 314 aa9.6□□□□□ -0.87
TRIM28-211ENST00000597968 CDKN1BP46527 198 aa9.6□□□□□ -0.87
TRIM28-211ENST00000597968 ATP5G3P48201 142 aa9.6□□□□□ -0.87
TRIM28-211ENST00000597968 RRAS2P62070 204 aaPredicted RBP9.6□□□□□ -0.87
TRIM28-211ENST00000597968 FGL1Q08830 312 aa9.6□□□□□ -0.87
TRIM28-211ENST00000597968 IAH1Q2TAA2 248 aaPredicted RBP9.6□□□□□ -0.87
TRIM28-211ENST00000597968 LRRC20Q8TCA0 184 aa9.6□□□□□ -0.87
TRIM28-211ENST00000597968 ATG101Q9BSB4 218 aa9.6□□□□□ -0.87
TRIM28-211ENST00000597968 PPP1R14DQ9NXH3 145 aa9.6□□□□□ -0.87
TRIM28-211ENST00000597968 TIMM8BQ9Y5J9 83 aaPredicted RBP9.6□□□□□ -0.87
TRIM28-211ENST00000597968 H7BYZ3 331 aa9.59□□□□□ -0.87
TRIM28-211ENST00000597968 METTL15P1P0C7V9 234 aa9.59□□□□□ -0.87
TRIM28-211ENST00000597968 BPIFA4PQ86YQ2 179 aa9.59□□□□□ -0.87
TRIM28-211ENST00000597968 RNF182Q8N6D2 247 aa9.59□□□□□ -0.87
TRIM28-211ENST00000597968 LINC01587Q99440 93 aa9.59□□□□□ -0.87
TRIM28-211ENST00000597968 ARL6Q9H0F7 186 aa9.59□□□□□ -0.87
TRIM28-211ENST00000597968 ARV1Q9H2C2 271 aa9.59□□□□□ -0.87
TRIM28-211ENST00000597968 PLA2G2EQ9NZK7 142 aa9.59□□□□□ -0.87
TRIM28-211ENST00000597968 IGLV2-18A0A075B6J9 118 aa9.58□□□□□ -0.88
TRIM28-211ENST00000597968 TRAV6A0A075B6T7 132 aa9.58□□□□□ -0.88
TRIM28-211ENST00000597968 PLAC8L1A1L4L8 177 aa9.58□□□□□ -0.88
TRIM28-211ENST00000597968 ZNF705GA8MUZ8 300 aaPredicted RBP9.58□□□□□ -0.88
TRIM28-211ENST00000597968 CCSO14618 274 aa9.58□□□□□ -0.88
TRIM28-211ENST00000597968 GOSR2O14653 212 aa9.58□□□□□ -0.88
TRIM28-211ENST00000597968 MRPS12O15235 138 aaKnown RBP9.58□□□□□ -0.88
TRIM28-211ENST00000597968 PRB4P10163 310 aaPredicted RBP9.58□□□□□ -0.88
TRIM28-211ENST00000597968 CCL18P55774 89 aa9.58□□□□□ -0.88
TRIM28-211ENST00000597968 RHOBP62745 196 aa9.58□□□□□ -0.88
TRIM28-211ENST00000597968 HIST1H1AQ02539 215 aaPredicted RBP9.58□□□□□ -0.88
TRIM28-211ENST00000597968 ARL16Q0P5N6 197 aa9.58□□□□□ -0.88
TRIM28-211ENST00000597968 BAP18Q8IXM2 172 aa9.58□□□□□ -0.88
TRIM28-211ENST00000597968 ZBTB8BQ8NAP8 495 aaPredicted RBP9.58□□□□□ -0.88
TRIM28-211ENST00000597968 OR10J6PQ8NGY7 276 aa9.58□□□□□ -0.88
TRIM28-211ENST00000597968 TMEM263Q8WUH6 116 aaKnown RBP9.58□□□□□ -0.88
TRIM28-211ENST00000597968 MITD1Q8WV92 249 aa9.58□□□□□ -0.88
TRIM28-211ENST00000597968 ZNF503Q96F45 646 aa9.58□□□□□ -0.88
TRIM28-211ENST00000597968 C20orf85Q9H1P6 137 aa9.58□□□□□ -0.88
TRIM28-211ENST00000597968 ZNF331Q9NQX6 463 aaPredicted RBP9.58□□□□□ -0.88
TRIM28-211ENST00000597968 LYRM1O43325 122 aa9.57□□□□□ -0.88
TRIM28-211ENST00000597968 MBPP02686 304 aaPredicted RBP9.57□□□□□ -0.88
TRIM28-211ENST00000597968 RAB31Q13636 194 aa9.57□□□□□ -0.88
TRIM28-211ENST00000597968 GUK1Q16774 197 aa9.57□□□□□ -0.88
TRIM28-211ENST00000597968 PATE2Q6UY27 113 aa9.57□□□□□ -0.88
TRIM28-211ENST00000597968 LINC00305Q7Z4B0 112 aa9.57□□□□□ -0.88
TRIM28-211ENST00000597968 RPUSD4Q96CM3 377 aaKnown RBP9.57□□□□□ -0.88
TRIM28-211ENST00000597968 UHRF2Q96PU4 802 aa9.57□□□□□ -0.88
TRIM28-211ENST00000597968 RCL1Q9Y2P8 373 aaKnown RBP9.57□□□□□ -0.88
TRIM28-211ENST00000597968 PXMP4Q9Y6I8 212 aa9.57□□□□□ -0.88
TRIM28-211ENST00000597968 TRAV12-2A0A075B6T6 113 aa9.56□□□□□ -0.88
TRIM28-211ENST00000597968 AGPAT2O15120 278 aa9.56□□□□□ -0.88
TRIM28-211ENST00000597968 TCRBP04435 133 aa9.56□□□□□ -0.88
TRIM28-211ENST00000597968 DEFB130BP0DP73 79 aa9.56□□□□□ -0.88
TRIM28-211ENST00000597968 DEFB130AP0DP74 79 aa9.56□□□□□ -0.88
TRIM28-211ENST00000597968 BTF3P20290 206 aaKnown RBP9.56□□□□□ -0.88
TRIM28-211ENST00000597968 RNASE8Q8TDE3 154 aaKnown RBP9.56□□□□□ -0.88
TRIM28-211ENST00000597968 ODF3Q96PU9 254 aa9.56□□□□□ -0.88
TRIM28-211ENST00000597968 SEC22CQ9BRL7 303 aa9.56□□□□□ -0.88
TRIM28-211ENST00000597968 RYR1P21817 5038 aa9.56□□□□□ -0.88
TRIM28-211ENST00000597968 NBDYA0A0U1RRE5 68 aa9.55□□□□□ -0.88
TRIM28-211ENST00000597968 C7orf66A4D0T2 115 aa9.55□□□□□ -0.88
TRIM28-211ENST00000597968 FAM25EA8MYX2 175 aa9.55□□□□□ -0.88
TRIM28-211ENST00000597968 F5H768 121 aa9.55□□□□□ -0.88
TRIM28-211ENST00000597968 H3BNG1 76 aa9.55□□□□□ -0.88
TRIM28-211ENST00000597968 ZNF253O75346 499 aa9.55□□□□□ -0.88
TRIM28-211ENST00000597968 PRM2P04554 102 aa9.55□□□□□ -0.88
TRIM28-211ENST00000597968 SNRPCP09234 159 aaKnown RBP9.55□□□□□ -0.88
TRIM28-211ENST00000597968 AZU1P20160 251 aa9.55□□□□□ -0.88
TRIM28-211ENST00000597968 SLC38A11Q08AI6 406 aa9.55□□□□□ -0.88
TRIM28-211ENST00000597968 Q6ZRG5 221 aa9.55□□□□□ -0.88
TRIM28-211ENST00000597968 CCDC28AQ8IWP9 274 aa9.55□□□□□ -0.88
TRIM28-211ENST00000597968 ZNRF2Q8NHG8 242 aa9.55□□□□□ -0.88
TRIM28-211ENST00000597968 NDUFA13Q9P0J0 144 aa9.55□□□□□ -0.88
TRIM28-211ENST00000597968 COX7A2P2O60397 106 aa9.54□□□□□ -0.88
TRIM28-211ENST00000597968 ZNF846Q147U1 533 aa9.54□□□□□ -0.88
TRIM28-211ENST00000597968 C6orf223Q8N319 242 aa9.54□□□□□ -0.88
TRIM28-211ENST00000597968 LINC00612Q8N6U2 182 aa9.54□□□□□ -0.88
TRIM28-211ENST00000597968 OR1L4Q8NGR5 311 aa9.54□□□□□ -0.88
TRIM28-211ENST00000597968 PFDN5Q99471 154 aa9.54□□□□□ -0.88
TRIM28-211ENST00000597968 LSM5Q9Y4Y9 91 aaKnown RBP9.54□□□□□ -0.88
TRIM28-211ENST00000597968 L7N2F9 121 aa9.53□□□□□ -0.88
TRIM28-211ENST00000597968 NUDT3O95989 172 aa9.53□□□□□ -0.88
TRIM28-211ENST00000597968 IGLC2P0DOY2 106 aa9.53□□□□□ -0.88
TRIM28-211ENST00000597968 VAMP2P63027 116 aa9.53□□□□□ -0.88
TRIM28-211ENST00000597968 TTC32Q5I0X7 151 aa9.53□□□□□ -0.88
TRIM28-211ENST00000597968 C10orf113Q5VZT2 155 aa9.53□□□□□ -0.88
TRIM28-211ENST00000597968 C12orf45Q8N5I9 185 aaPredicted RBP9.53□□□□□ -0.88
TRIM28-211ENST00000597968 ZNF431Q8TF32 576 aaPredicted RBP9.53□□□□□ -0.88
TRIM28-211ENST00000597968 CHAC2Q8WUX2 184 aa9.53□□□□□ -0.88
TRIM28-211ENST00000597968 TMEM37Q8WXS4 190 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms