RNA–Protein interactions for RNA: ENST00000573028.5

VPS53-215, Transcript of VPS53, GARP complex subunit, human

TSL 2

Gene VPS53, Length 3,204 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS53-215	ENST00000573028	KAAG1	Q9UBP8	84 aa		13.53	□□□□□ -0.24
VPS53-215	ENST00000573028	PSG8	Q9UQ74	426 aa		13.53	□□□□□ -0.24
VPS53-215	ENST00000573028	PLP1	P60201	277 aa		13.52	□□□□□ -0.24
VPS53-215	ENST00000573028	RNF151	Q2KHN1	245 aa		13.52	□□□□□ -0.24
VPS53-215	ENST00000573028	HLA-DRB1	P01911	266 aa		13.52	□□□□□ -0.24
VPS53-215	ENST00000573028	C8orf49	Q96NF6	230 aa		13.52	□□□□□ -0.24
VPS53-215	ENST00000573028	SPTBN1	Q01082	2364 aa	Known RBP	13.52	□□□□□ -0.25
VPS53-215	ENST00000573028	TRBV19	A0A075B6N1	114 aa		13.52	□□□□□ -0.25
VPS53-215	ENST00000573028	ZNF785	A8K8V0	405 aa		13.52	□□□□□ -0.25
VPS53-215	ENST00000573028	HAX1	O00165	279 aa		13.52	□□□□□ -0.25
VPS53-215	ENST00000573028	RIG	Q13278	110 aa		13.52	□□□□□ -0.25
VPS53-215	ENST00000573028	OR8A1	Q8NGG7	326 aa		13.52	□□□□□ -0.25
VPS53-215	ENST00000573028	HSPB8	Q9UJY1	196 aa		13.52	□□□□□ -0.25
VPS53-215	ENST00000573028		K7EQM0	130 aa		13.51	□□□□□ -0.25
VPS53-215	ENST00000573028	IGHV3-23	P01764	117 aa		13.51	□□□□□ -0.25
VPS53-215	ENST00000573028	LINC01560	Q8TB33	94 aa		13.51	□□□□□ -0.25
VPS53-215	ENST00000573028	DCHS2	Q6V1P9	2916 aa		13.51	□□□□□ -0.25
VPS53-215	ENST00000573028	IGHV3OR16-8	A0A075B7F1	116 aa		13.51	□□□□□ -0.25
VPS53-215	ENST00000573028	NPIPB6	E9PJ23	425 aa		13.51	□□□□□ -0.25
VPS53-215	ENST00000573028	FAM106CP	P0CH98	169 aa		13.51	□□□□□ -0.25
VPS53-215	ENST00000573028	ARF6	P62330	175 aa		13.51	□□□□□ -0.25
VPS53-215	ENST00000573028	FAM106A	Q4KMX7	169 aa		13.51	□□□□□ -0.25
VPS53-215	ENST00000573028	MBD3L2B	A0A1B0GVZ6	204 aa	Predicted RBP	13.51	□□□□□ -0.25
VPS53-215	ENST00000573028	CRX	O43186	299 aa	Predicted RBP	13.51	□□□□□ -0.25
VPS53-215	ENST00000573028	RBPJ	Q06330	500 aa		13.51	□□□□□ -0.25
VPS53-215	ENST00000573028	NEU4	Q8WWR8	484 aa	Predicted RBP	13.51	□□□□□ -0.25
VPS53-215	ENST00000573028	OR2T8	A6NH00	312 aa		13.5	□□□□□ -0.25
VPS53-215	ENST00000573028	CT45A10	P0DMU9	189 aa		13.5	□□□□□ -0.25
VPS53-215	ENST00000573028	RNF125	Q96EQ8	232 aa		13.5	□□□□□ -0.25
VPS53-215	ENST00000573028		K7EIM0	57 aa		13.5	□□□□□ -0.25
VPS53-215	ENST00000573028	LDLRAD2	Q5SZI1	272 aa		13.5	□□□□□ -0.25
VPS53-215	ENST00000573028	SHANK2-AS3	Q9BTD1	123 aa		13.5	□□□□□ -0.25
VPS53-215	ENST00000573028	SELENOK	Q9Y6D0	94 aa		13.5	□□□□□ -0.25
VPS53-215	ENST00000573028	IGHV3-35	A0A0C4DH35	117 aa		13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	GNG7	O60262	68 aa		13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	NCR2	O95944	276 aa		13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	CRIP1	P50238	77 aa		13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	PVRIG	Q6DKI7	326 aa		13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	TMEM14C	Q9P0S9	112 aa		13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	TMEM213	A2RRL7	107 aa		13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	FAM231B	A6NCW3	169 aa		13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	APOBEC3A	P31941	199 aa	Predicted RBP	13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	IFI27	P40305	119 aa	Predicted RBP	13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	BVES-AS1	Q5T3Y7	98 aa		13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	SIGLEC15	Q6ZMC9	328 aa		13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	LOC105371242	A0A075B767	164 aa		13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	LOXL1	Q08397	574 aa	Predicted RBP	13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	FOXE3	Q13461	319 aa		13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	IGFL4	Q6B9Z1	124 aa		13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	PET117	Q6UWS5	81 aa		13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	ZNF491	Q8N8L2	437 aa		13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	AKAP6	Q13023	2319 aa		13.49	□□□□□ -0.25
VPS53-215	ENST00000573028	BSN	Q9UPA5	3926 aa		13.48	□□□□□ -0.25
VPS53-215	ENST00000573028	CD3E	P07766	207 aa		13.48	□□□□□ -0.25
VPS53-215	ENST00000573028	KLRD1	Q13241	179 aa		13.48	□□□□□ -0.25
VPS53-215	ENST00000573028	PSG3	Q16557	428 aa		13.48	□□□□□ -0.25
VPS53-215	ENST00000573028	TNFRSF14	Q92956	283 aa		13.48	□□□□□ -0.25
VPS53-215	ENST00000573028		D6R8Y8	96 aa		13.47	□□□□□ -0.25
VPS53-215	ENST00000573028	CSN1S1	P47710	185 aa		13.47	□□□□□ -0.25
VPS53-215	ENST00000573028	LYZL1	Q6UWQ5	148 aa		13.47	□□□□□ -0.25
VPS53-215	ENST00000573028	AMN1	Q8IY45	258 aa		13.47	□□□□□ -0.25
VPS53-215	ENST00000573028	SCRT2	Q9NQ03	307 aa		13.47	□□□□□ -0.25
VPS53-215	ENST00000573028	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	13.47	□□□□□ -0.25
VPS53-215	ENST00000573028	FAM90A27P	A6NNH2	459 aa		13.47	□□□□□ -0.25
VPS53-215	ENST00000573028		H3BRN7	92 aa		13.47	□□□□□ -0.25
VPS53-215	ENST00000573028	TAX1BP3	O14907	124 aa		13.47	□□□□□ -0.25
VPS53-215	ENST00000573028	IGKV2D-40	P01614	121 aa	Predicted RBP	13.47	□□□□□ -0.25
VPS53-215	ENST00000573028	IGF2-AS	Q6U949	168 aa		13.47	□□□□□ -0.25
VPS53-215	ENST00000573028		Q8NA96	180 aa		13.47	□□□□□ -0.25
VPS53-215	ENST00000573028	AAMDC	Q9H7C9	122 aa		13.47	□□□□□ -0.25
VPS53-215	ENST00000573028	IGHV2-70D	A0A0C4DH43	119 aa		13.46	□□□□□ -0.25
VPS53-215	ENST00000573028	UQCRFS1	P47985	274 aa		13.46	□□□□□ -0.25
VPS53-215	ENST00000573028	WFDC3	Q8IUB2	231 aa		13.46	□□□□□ -0.25
VPS53-215	ENST00000573028	OR10AG1	Q8NH19	301 aa		13.46	□□□□□ -0.25
VPS53-215	ENST00000573028	SVEP1	Q4LDE5	3571 aa		13.46	□□□□□ -0.25
VPS53-215	ENST00000573028	AMMECR1L	Q6DCA0	310 aa		13.46	□□□□□ -0.26
VPS53-215	ENST00000573028		Q8TAT8	98 aa		13.46	□□□□□ -0.26
VPS53-215	ENST00000573028	ZNF414	Q96IQ9	312 aa		13.46	□□□□□ -0.26
VPS53-215	ENST00000573028	ZNF747	Q9BV97	191 aa		13.46	□□□□□ -0.26
VPS53-215	ENST00000573028	NCBP2L	A6PVI3	153 aa	Known RBP	13.45	□□□□□ -0.26
VPS53-215	ENST00000573028		B9A039	149 aa		13.45	□□□□□ -0.26
VPS53-215	ENST00000573028	SMKR1	H3BMG3	65 aa		13.45	□□□□□ -0.26
VPS53-215	ENST00000573028	NHLH1	Q02575	133 aa		13.45	□□□□□ -0.26
VPS53-215	ENST00000573028	C12orf54	Q6X4T0	127 aa		13.45	□□□□□ -0.26
VPS53-215	ENST00000573028	TMEM75	Q8N9X5	138 aa		13.45	□□□□□ -0.26
VPS53-215	ENST00000573028	TMEM189	A5PLL7	270 aa		13.45	□□□□□ -0.26
VPS53-215	ENST00000573028	ASH1L	Q9NR48	2969 aa	Known RBP	13.45	□□□□□ -0.26
VPS53-215	ENST00000573028	C1RL	Q9NZP8	487 aa		13.45	□□□□□ -0.26
VPS53-215	ENST00000573028	GRN	P28799	593 aa	Known RBP	13.45	□□□□□ -0.26
VPS53-215	ENST00000573028	OVOL3	O00110	214 aa		13.44	□□□□□ -0.26
VPS53-215	ENST00000573028	NBR2	O15453	112 aa		13.44	□□□□□ -0.26
VPS53-215	ENST00000573028	GPR183	P32249	361 aa		13.44	□□□□□ -0.26
VPS53-215	ENST00000573028	MUC6	Q6W4X9	2439 aa		13.44	□□□□□ -0.26
VPS53-215	ENST00000573028	LINC01545	Q5VT33	79 aa		13.43	□□□□□ -0.26
VPS53-215	ENST00000573028	PRELID3A	Q96N28	172 aa		13.43	□□□□□ -0.26
VPS53-215	ENST00000573028	JKAMP	Q9P055	326 aa		13.43	□□□□□ -0.26
VPS53-215	ENST00000573028	HOXB4	P17483	251 aa	Predicted RBP	13.43	□□□□□ -0.26
VPS53-215	ENST00000573028	RBX1	P62877	108 aa		13.43	□□□□□ -0.26
VPS53-215	ENST00000573028	ATRX	P46100	2492 aa		13.43	□□□□□ -0.26
VPS53-215	ENST00000573028	SH2D1A	O60880	128 aa		13.43	□□□□□ -0.26

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