RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 NDPQ00604 133 aa17.88■□□□□ 0.45
VPS53-211ENST00000571805 TTC9CQ8N5M4 171 aa17.88■□□□□ 0.45
VPS53-211ENST00000571805 LPAR2Q9HBW0 351 aa17.88■□□□□ 0.45
VPS53-211ENST00000571805 TRAV9-2A0A087WT02 112 aa17.87■□□□□ 0.45
VPS53-211ENST00000571805 K7EQM0 130 aa17.87■□□□□ 0.45
VPS53-211ENST00000571805 M0R3E3 92 aa17.87■□□□□ 0.45
VPS53-211ENST00000571805 Q6ZN92 141 aa17.87■□□□□ 0.45
VPS53-211ENST00000571805 ARPC1AQ92747 370 aa17.87■□□□□ 0.45
VPS53-211ENST00000571805 TXN2Q99757 166 aa17.87■□□□□ 0.45
VPS53-211ENST00000571805 KLRB1Q12918 225 aa17.87■□□□□ 0.45
VPS53-211ENST00000571805 Q8N6K4 173 aa17.87■□□□□ 0.45
VPS53-211ENST00000571805 LINC00614P0C842 121 aa17.86■□□□□ 0.45
VPS53-211ENST00000571805 C1orf122Q6ZSJ8 110 aa17.86■□□□□ 0.45
VPS53-211ENST00000571805 TMEM208Q9BTX3 173 aa17.86■□□□□ 0.45
VPS53-211ENST00000571805 TMEM70Q9BUB7 260 aa17.86■□□□□ 0.45
VPS53-211ENST00000571805 A0A1B0GUT8 65 aa17.86■□□□□ 0.45
VPS53-211ENST00000571805 CRXO43186 299 aaPredicted RBP17.86■□□□□ 0.45
VPS53-211ENST00000571805 VMO1Q7Z5L0 202 aa17.86■□□□□ 0.45
VPS53-211ENST00000571805 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP17.85■□□□□ 0.45
VPS53-211ENST00000571805 ARMS2P0C7Q2 107 aa17.85■□□□□ 0.45
VPS53-211ENST00000571805 PDE6HQ13956 83 aa17.85■□□□□ 0.45
VPS53-211ENST00000571805 ZNF124Q15973 351 aa17.85■□□□□ 0.45
VPS53-211ENST00000571805 CSMD1Q96PZ7 3565 aa17.85■□□□□ 0.45
VPS53-211ENST00000571805 HNRNPA3P51991 378 aaKnown RBP17.84■□□□□ 0.45
VPS53-211ENST00000571805 LINC00173Q6ZV60 143 aa17.84■□□□□ 0.45
VPS53-211ENST00000571805 GATD1Q8NB37 220 aa17.84■□□□□ 0.45
VPS53-211ENST00000571805 NCBP2LA6PVI3 153 aaKnown RBP17.84■□□□□ 0.45
VPS53-211ENST00000571805 COL5A1-AS1Q5SY13 56 aa17.84■□□□□ 0.45
VPS53-211ENST00000571805 CCDC144NLQ6NUI1 221 aa17.84■□□□□ 0.45
VPS53-211ENST00000571805 C1RLQ9NZP8 487 aa17.84■□□□□ 0.45
VPS53-211ENST00000571805 RAXQ9Y2V3 346 aa17.84■□□□□ 0.45
VPS53-211ENST00000571805 C20orf202A1L168 122 aa17.83■□□□□ 0.45
VPS53-211ENST00000571805 IGLL1P15814 213 aa17.83■□□□□ 0.45
VPS53-211ENST00000571805 EBI3Q14213 229 aa17.83■□□□□ 0.45
VPS53-211ENST00000571805 S100A7AQ86SG5 101 aa17.83■□□□□ 0.45
VPS53-211ENST00000571805 C21orf62Q9NYP8 219 aa17.83■□□□□ 0.45
VPS53-211ENST00000571805 NBASA2RRP1 2371 aa17.83■□□□□ 0.44
VPS53-211ENST00000571805 NDUFB8O95169 186 aa17.83■□□□□ 0.44
VPS53-211ENST00000571805 LAMTOR2Q9Y2Q5 125 aa17.83■□□□□ 0.44
VPS53-211ENST00000571805 IGF2RP11717 2491 aa17.82■□□□□ 0.44
VPS53-211ENST00000571805 ZFP36P26651 326 aaKnown RBP17.82■□□□□ 0.44
VPS53-211ENST00000571805 TSPOP30536 169 aa17.82■□□□□ 0.44
VPS53-211ENST00000571805 ZNF138P52744 262 aa17.82■□□□□ 0.44
VPS53-211ENST00000571805 RIGQ13278 110 aa17.82■□□□□ 0.44
VPS53-211ENST00000571805 C8orf49Q96NF6 230 aa17.82■□□□□ 0.44
VPS53-211ENST00000571805 OOSP1A8MZH6 123 aa17.82■□□□□ 0.44
VPS53-211ENST00000571805 DLEU1O43261 78 aa17.82■□□□□ 0.44
VPS53-211ENST00000571805 EGR2P11161 476 aaPredicted RBP17.82■□□□□ 0.44
VPS53-211ENST00000571805 TFPI2P48307 235 aa17.82■□□□□ 0.44
VPS53-211ENST00000571805 UCNP55089 124 aa17.82■□□□□ 0.44
VPS53-211ENST00000571805 SYS1-DBNDD2H3BUS1 97 aa17.81■□□□□ 0.44
VPS53-211ENST00000571805 LEPROTL1O95214 131 aa17.81■□□□□ 0.44
VPS53-211ENST00000571805 AAMDCQ9H7C9 122 aa17.81■□□□□ 0.44
VPS53-211ENST00000571805 IGHV3-23P01764 117 aa17.81■□□□□ 0.44
VPS53-211ENST00000571805 DMRTA1Q5VZB9 504 aa17.81■□□□□ 0.44
VPS53-211ENST00000571805 DTX2Q86UW9 622 aa17.81■□□□□ 0.44
VPS53-211ENST00000571805 STPG4Q8N801 248 aa17.81■□□□□ 0.44
VPS53-211ENST00000571805 GAGE1Q13065 139 aa17.8■□□□□ 0.44
VPS53-211ENST00000571805 MINOS1Q5TGZ0 78 aa17.8■□□□□ 0.44
VPS53-211ENST00000571805 MRPS16Q9Y3D3 137 aaKnown RBP17.8■□□□□ 0.44
VPS53-211ENST00000571805 MINOS1-NBL1R4GNA1 71 aa17.8■□□□□ 0.44
VPS53-211ENST00000571805 A0A1B0GW15 77 aa17.79■□□□□ 0.44
VPS53-211ENST00000571805 CTSGP08311 255 aa17.79■□□□□ 0.44
VPS53-211ENST00000571805 THYN1Q9P016 225 aa17.79■□□□□ 0.44
VPS53-211ENST00000571805 ATRXP46100 2492 aa17.79■□□□□ 0.44
VPS53-211ENST00000571805 OR4C46A6NHA9 309 aa17.79■□□□□ 0.44
VPS53-211ENST00000571805 OR5AL1P0C617 328 aa17.79■□□□□ 0.44
VPS53-211ENST00000571805 Q6AWC8 147 aa17.79■□□□□ 0.44
VPS53-211ENST00000571805 TMUB1Q9BVT8 246 aa17.79■□□□□ 0.44
VPS53-211ENST00000571805 IGHV7-81A0A0B4J1V7 117 aa17.78■□□□□ 0.44
VPS53-211ENST00000571805 A0A1W2PPR1 153 aa17.78■□□□□ 0.44
VPS53-211ENST00000571805 OR2T8A6NH00 312 aa17.78■□□□□ 0.44
VPS53-211ENST00000571805 PSG9Q00887 426 aa17.78■□□□□ 0.44
VPS53-211ENST00000571805 SERTM2A0A1B0GWG4 89 aa17.77■□□□□ 0.44
VPS53-211ENST00000571805 TMEM11P17152 192 aa17.77■□□□□ 0.44
VPS53-211ENST00000571805 SIRPDQ9H106 197 aa17.77■□□□□ 0.44
VPS53-211ENST00000571805 CT45A10P0DMU9 189 aa17.77■□□□□ 0.44
VPS53-211ENST00000571805 CYB5R2Q6BCY4 276 aa17.77■□□□□ 0.44
VPS53-211ENST00000571805 CSN1S1P47710 185 aa17.76■□□□□ 0.43
VPS53-211ENST00000571805 COX8CQ7Z4L0 72 aa17.76■□□□□ 0.43
VPS53-211ENST00000571805 CSN3P07498 182 aa17.76■□□□□ 0.43
VPS53-211ENST00000571805 RPL7P18124 248 aaKnown RBP17.76■□□□□ 0.43
VPS53-211ENST00000571805 ZNF493Q6ZR52 646 aa17.76■□□□□ 0.43
VPS53-211ENST00000571805 Q8N9W7 124 aa17.76■□□□□ 0.43
VPS53-211ENST00000571805 SMAD5-AS1Q9Y6J3 95 aa17.76■□□□□ 0.43
VPS53-211ENST00000571805 NDUFS7O75251 213 aa17.75■□□□□ 0.43
VPS53-211ENST00000571805 NPSP0C0P6 89 aa17.75■□□□□ 0.43
VPS53-211ENST00000571805 ARL6IP6Q8N6S5 226 aa17.75■□□□□ 0.43
VPS53-211ENST00000571805 TPPP3Q9BW30 176 aa17.75■□□□□ 0.43
VPS53-211ENST00000571805 GOLT1BQ9Y3E0 138 aa17.75■□□□□ 0.43
VPS53-211ENST00000571805 IGKV2-40A0A087WW87 121 aaPredicted RBP17.74■□□□□ 0.43
VPS53-211ENST00000571805 SH2D1AO60880 128 aa17.74■□□□□ 0.43
VPS53-211ENST00000571805 IGKV2D-40P01614 121 aaPredicted RBP17.74■□□□□ 0.43
VPS53-211ENST00000571805 WNK2Q9Y3S1 2297 aa17.74■□□□□ 0.43
VPS53-211ENST00000571805 IGHG4P01861 327 aa17.74■□□□□ 0.43
VPS53-211ENST00000571805 LYZL1Q6UWQ5 148 aa17.74■□□□□ 0.43
VPS53-211ENST00000571805 AJUBAQ96IF1 538 aa17.74■□□□□ 0.43
VPS53-211ENST00000571805 RABAC1Q9UI14 185 aa17.74■□□□□ 0.43
VPS53-211ENST00000571805 TMEM189A5PLL7 270 aa17.73■□□□□ 0.43
VPS53-211ENST00000571805 PET117Q6UWS5 81 aa17.73■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.7 ms