RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 C1orf134Q5TEV5 83 aa12.03□□□□□ -0.48
CLN3-216ENST00000565316 PXDC1Q5TGL8 231 aa12.03□□□□□ -0.48
CLN3-216ENST00000565316 TEPPQ6URK8 271 aa12.03□□□□□ -0.48
CLN3-216ENST00000565316 ARL6Q9H0F7 186 aa12.03□□□□□ -0.48
CLN3-216ENST00000565316 ZNF701M0R085 212 aaPredicted RBP12.02□□□□□ -0.49
CLN3-216ENST00000565316 TSC22D2O75157 780 aa12.02□□□□□ -0.49
CLN3-216ENST00000565316 CXCL2P19875 107 aa12.02□□□□□ -0.49
CLN3-216ENST00000565316 TAS2R60P59551 318 aa12.02□□□□□ -0.49
CLN3-216ENST00000565316 LINC01587Q99440 93 aa12.02□□□□□ -0.49
CLN3-216ENST00000565316 ARV1Q9H2C2 271 aa12.02□□□□□ -0.49
CLN3-216ENST00000565316 RNF24Q9Y225 148 aa12.02□□□□□ -0.49
CLN3-216ENST00000565316 CBY3A6NI87 242 aa12.01□□□□□ -0.49
CLN3-216ENST00000565316 BTCP35070 178 aa12.01□□□□□ -0.49
CLN3-216ENST00000565316 RHOBP62745 196 aa12.01□□□□□ -0.49
CLN3-216ENST00000565316 FCN2Q15485 313 aa12.01□□□□□ -0.49
CLN3-216ENST00000565316 IAH1Q2TAA2 248 aaPredicted RBP12.01□□□□□ -0.49
CLN3-216ENST00000565316 C4orf46Q504U0 113 aa12.01□□□□□ -0.49
CLN3-216ENST00000565316 TRIQKQ629K1 86 aa12.01□□□□□ -0.49
CLN3-216ENST00000565316 OR10P1Q8NGE3 313 aa12.01□□□□□ -0.49
CLN3-216ENST00000565316 LRRC20Q8TCA0 184 aa12.01□□□□□ -0.49
CLN3-216ENST00000565316 RPUSD4Q96CM3 377 aaKnown RBP12.01□□□□□ -0.49
CLN3-216ENST00000565316 SDHCQ99643 169 aaPredicted RBP12.01□□□□□ -0.49
CLN3-216ENST00000565316 GGACTQ9BVM4 153 aa12.01□□□□□ -0.49
CLN3-216ENST00000565316 MGAT4CQ9UBM8 478 aa12.01□□□□□ -0.49
CLN3-216ENST00000565316 RCL1Q9Y2P8 373 aaKnown RBP12.01□□□□□ -0.49
CLN3-216ENST00000565316 F5H768 121 aa12□□□□□ -0.49
CLN3-216ENST00000565316 ATP5G1P05496 136 aa12□□□□□ -0.49
CLN3-216ENST00000565316 ANXA7P20073 488 aaKnown RBP12□□□□□ -0.49
CLN3-216ENST00000565316 ATP5G3P48201 142 aa12□□□□□ -0.49
CLN3-216ENST00000565316 INPP1P49441 399 aa12□□□□□ -0.49
CLN3-216ENST00000565316 SLC38A11Q08AI6 406 aa12□□□□□ -0.49
CLN3-216ENST00000565316 ARL16Q0P5N6 197 aa12□□□□□ -0.49
CLN3-216ENST00000565316 ZNF493Q6ZR52 646 aa12□□□□□ -0.49
CLN3-216ENST00000565316 ZBTB8BQ8NAP8 495 aaPredicted RBP12□□□□□ -0.49
CLN3-216ENST00000565316 MITD1Q8WV92 249 aa12□□□□□ -0.49
CLN3-216ENST00000565316 ZNF331Q9NQX6 463 aaPredicted RBP12□□□□□ -0.49
CLN3-216ENST00000565316 PPP1R14DQ9NXH3 145 aa12□□□□□ -0.49
CLN3-216ENST00000565316 MUC4Q99102 2169 aa11.99□□□□□ -0.49
CLN3-216ENST00000565316 CDKN1BP46527 198 aa11.99□□□□□ -0.49
CLN3-216ENST00000565316 LCN15Q6UWW0 184 aa11.99□□□□□ -0.49
CLN3-216ENST00000565316 ZNF546Q86UE3 836 aa11.99□□□□□ -0.49
CLN3-216ENST00000565316 ZNRF2Q8NHG8 242 aa11.99□□□□□ -0.49
CLN3-216ENST00000565316 C16orf74Q96GX8 76 aa11.99□□□□□ -0.49
CLN3-216ENST00000565316 ATG101Q9BSB4 218 aa11.99□□□□□ -0.49
CLN3-216ENST00000565316 LRP1BQ9NZR2 4599 aa11.98□□□□□ -0.49
CLN3-216ENST00000565316 C7orf66A4D0T2 115 aa11.98□□□□□ -0.49
CLN3-216ENST00000565316 GOSR2O14653 212 aa11.98□□□□□ -0.49
CLN3-216ENST00000565316 AGPAT2O15120 278 aa11.98□□□□□ -0.49
CLN3-216ENST00000565316 SCGB1D2O95969 90 aa11.98□□□□□ -0.49
CLN3-216ENST00000565316 CNPY1Q3B7I2 92 aa11.98□□□□□ -0.49
CLN3-216ENST00000565316 LINC00305Q7Z4B0 112 aa11.98□□□□□ -0.49
CLN3-216ENST00000565316 ZNF575Q86XF7 245 aa11.98□□□□□ -0.49
CLN3-216ENST00000565316 RNASE8Q8TDE3 154 aaKnown RBP11.98□□□□□ -0.49
CLN3-216ENST00000565316 SLC50A1Q9BRV3 221 aa11.98□□□□□ -0.49
CLN3-216ENST00000565316 TIMM8BQ9Y5J9 83 aaPredicted RBP11.98□□□□□ -0.49
CLN3-216ENST00000565316 HSPG2P98160 4391 aa11.98□□□□□ -0.49
CLN3-216ENST00000565316 NBDYA0A0U1RRE5 68 aa11.97□□□□□ -0.49
CLN3-216ENST00000565316 LINC00854A0A1B0GVQ3 168 aa11.97□□□□□ -0.49
CLN3-216ENST00000565316 CENPXA8MT69 81 aa11.97□□□□□ -0.49
CLN3-216ENST00000565316 H7BYZ3 331 aa11.97□□□□□ -0.49
CLN3-216ENST00000565316 MBPP02686 304 aaPredicted RBP11.97□□□□□ -0.49
CLN3-216ENST00000565316 PRB4P10163 310 aaPredicted RBP11.97□□□□□ -0.49
CLN3-216ENST00000565316 BPIFA4PQ86YQ2 179 aa11.97□□□□□ -0.49
CLN3-216ENST00000565316 TMEM263Q8WUH6 116 aaKnown RBP11.97□□□□□ -0.49
CLN3-216ENST00000565316 TMEM37Q8WXS4 190 aa11.97□□□□□ -0.49
CLN3-216ENST00000565316 MGST2Q99735 147 aa11.97□□□□□ -0.49
CLN3-216ENST00000565316 C20orf144Q9BQM9 153 aa11.97□□□□□ -0.49
CLN3-216ENST00000565316 GSKIPQ9P0R6 139 aa11.97□□□□□ -0.49
CLN3-216ENST00000565316 NUDT3O95989 172 aa11.96□□□□□ -0.49
CLN3-216ENST00000565316 LINC00612Q8N6U2 182 aa11.96□□□□□ -0.49
CLN3-216ENST00000565316 PRAC2D3DTV9 90 aa11.95□□□□□ -0.5
CLN3-216ENST00000565316 SLC17A3O00476 420 aa11.95□□□□□ -0.5
CLN3-216ENST00000565316 IGLC2P0DOY2 106 aa11.95□□□□□ -0.5
CLN3-216ENST00000565316 HTN1P15515 57 aa11.95□□□□□ -0.5
CLN3-216ENST00000565316 CCL18P55774 89 aa11.95□□□□□ -0.5
CLN3-216ENST00000565316 KIR3DS1Q14943 382 aa11.95□□□□□ -0.5
CLN3-216ENST00000565316 MORN5Q5VZ52 161 aa11.95□□□□□ -0.5
CLN3-216ENST00000565316 RNF141Q8WVD5 230 aa11.95□□□□□ -0.5
CLN3-216ENST00000565316 SAT2Q96F10 170 aaPredicted RBP11.95□□□□□ -0.5
CLN3-216ENST00000565316 NOP10Q9NPE3 64 aaKnown RBP11.95□□□□□ -0.5
CLN3-216ENST00000565316 LINC00588Q9Y4M8 146 aa11.95□□□□□ -0.5
CLN3-216ENST00000565316 COX7A2P2O60397 106 aa11.94□□□□□ -0.5
CLN3-216ENST00000565316 SNRPCP09234 159 aaKnown RBP11.94□□□□□ -0.5
CLN3-216ENST00000565316 IL7P13232 177 aa11.94□□□□□ -0.5
CLN3-216ENST00000565316 TNP2Q05952 138 aa11.94□□□□□ -0.5
CLN3-216ENST00000565316 OPCMLQ14982 345 aa11.94□□□□□ -0.5
CLN3-216ENST00000565316 C6orf223Q8N319 242 aa11.94□□□□□ -0.5
CLN3-216ENST00000565316 PXMP4Q9Y6I8 212 aa11.94□□□□□ -0.5
CLN3-216ENST00000565316 H3BQ15 152 aa11.93□□□□□ -0.5
CLN3-216ENST00000565316 GFI1BQ5VTD9 330 aa11.93□□□□□ -0.5
CLN3-216ENST00000565316 C10orf113Q5VZT2 155 aa11.93□□□□□ -0.5
CLN3-216ENST00000565316 OR10J6PQ8NGY7 276 aa11.93□□□□□ -0.5
CLN3-216ENST00000565316 C11orf1Q9H5F2 150 aa11.93□□□□□ -0.5
CLN3-216ENST00000565316 DNAJC4Q9NNZ3 241 aa11.93□□□□□ -0.5
CLN3-216ENST00000565316 DNAH5Q8TE73 4624 aa11.93□□□□□ -0.5
CLN3-216ENST00000565316 H3BTX0 84 aa11.92□□□□□ -0.5
CLN3-216ENST00000565316 PLA2G10O15496 165 aa11.92□□□□□ -0.5
CLN3-216ENST00000565316 CAMLGP49069 296 aa11.92□□□□□ -0.5
CLN3-216ENST00000565316 ZNF503Q96F45 646 aa11.92□□□□□ -0.5
CLN3-216ENST00000565316 ODF3Q96PU9 254 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 95.8 ms