RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 GLMPQ8WWB7 406 aa16.04■□□□□ 0.16
VPS28-208ENST00000527797 CITED2Q99967 270 aaPredicted RBP16.04■□□□□ 0.16
VPS28-208ENST00000527797 NIPSNAP3BQ9BS92 247 aa16.04■□□□□ 0.16
VPS28-208ENST00000527797 SMPXQ9UHP9 88 aa16.04■□□□□ 0.16
VPS28-208ENST00000527797 A0A087X0K7 114 aa16.03■□□□□ 0.16
VPS28-208ENST00000527797 A0A1B0GUS0 222 aa16.03■□□□□ 0.16
VPS28-208ENST00000527797 SNAPINO95295 136 aa16.03■□□□□ 0.16
VPS28-208ENST00000527797 PSG9Q00887 426 aa16.03■□□□□ 0.16
VPS28-208ENST00000527797 HIST2H2BDQ6DRA6 164 aa16.03■□□□□ 0.16
VPS28-208ENST00000527797 SIGLEC15Q6ZMC9 328 aa16.03■□□□□ 0.16
VPS28-208ENST00000527797 RHPN1-AS1Q9BWJ2 59 aa16.03■□□□□ 0.16
VPS28-208ENST00000527797 NSD1Q96L73 2696 aaPredicted RBP16.03■□□□□ 0.16
VPS28-208ENST00000527797 A8MWP6 167 aa16.02■□□□□ 0.16
VPS28-208ENST00000527797 SLC17A3O00476 420 aa16.02■□□□□ 0.16
VPS28-208ENST00000527797 BMI1P35226 326 aa16.02■□□□□ 0.16
VPS28-208ENST00000527797 C8orf86Q6ZUL3 223 aa16.02■□□□□ 0.16
VPS28-208ENST00000527797 C5orf17Q8NAS9 161 aa16.02■□□□□ 0.16
VPS28-208ENST00000527797 EPDR1Q9UM22 224 aa16.02■□□□□ 0.16
VPS28-208ENST00000527797 SETXQ7Z333 2677 aaKnown RBP16.02■□□□□ 0.16
VPS28-208ENST00000527797 F8P00451 2351 aa16.02■□□□□ 0.15
VPS28-208ENST00000527797 A0A1W2PRX2 142 aa16.01■□□□□ 0.15
VPS28-208ENST00000527797 CHEK1O14757 476 aa16.01■□□□□ 0.15
VPS28-208ENST00000527797 ZNF253O75346 499 aa16.01■□□□□ 0.15
VPS28-208ENST00000527797 MEOX2P50222 304 aa16.01■□□□□ 0.15
VPS28-208ENST00000527797 SLURP1P55000 103 aa16.01■□□□□ 0.15
VPS28-208ENST00000527797 EXOC3-AS1Q8N2X6 119 aa16.01■□□□□ 0.15
VPS28-208ENST00000527797 HIST1H2BAQ96A08 127 aa16.01■□□□□ 0.15
VPS28-208ENST00000527797 AAMDCQ9H7C9 122 aa16.01■□□□□ 0.15
VPS28-208ENST00000527797 TMEM241Q24JQ0 296 aa16.01■□□□□ 0.15
VPS28-208ENST00000527797 CLRN3Q8NCR9 226 aa16.01■□□□□ 0.15
VPS28-208ENST00000527797 CMTM2Q8TAZ6 248 aa16.01■□□□□ 0.15
VPS28-208ENST00000527797 TVP23CQ96ET8 276 aa16.01■□□□□ 0.15
VPS28-208ENST00000527797 DUX3Q96PT4 197 aa16.01■□□□□ 0.15
VPS28-208ENST00000527797 DERL1Q9BUN8 251 aa16.01■□□□□ 0.15
VPS28-208ENST00000527797 NAT8Q9UHE5 227 aa16.01■□□□□ 0.15
VPS28-208ENST00000527797 TMEM213A2RRL7 107 aa16■□□□□ 0.15
VPS28-208ENST00000527797 M0R036 132 aa16■□□□□ 0.15
VPS28-208ENST00000527797 PEX7O00628 323 aa16■□□□□ 0.15
VPS28-208ENST00000527797 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16■□□□□ 0.15
VPS28-208ENST00000527797 C2CD4CQ8TF44 421 aa16■□□□□ 0.15
VPS28-208ENST00000527797 HELTA6NFD8 242 aa15.99■□□□□ 0.15
VPS28-208ENST00000527797 AKR1C3P42330 323 aa15.99■□□□□ 0.15
VPS28-208ENST00000527797 GNG5P63218 68 aa15.99■□□□□ 0.15
VPS28-208ENST00000527797 SDF2L1Q9HCN8 221 aa15.99■□□□□ 0.15
VPS28-208ENST00000527797 RPL35P42766 123 aaKnown RBP15.98■□□□□ 0.15
VPS28-208ENST00000527797 RAX2Q96IS3 184 aa15.98■□□□□ 0.15
VPS28-208ENST00000527797 SLC50A1Q9BRV3 221 aa15.98■□□□□ 0.15
VPS28-208ENST00000527797 RPH3ALQ9UNE2 315 aa15.98■□□□□ 0.15
VPS28-208ENST00000527797 TCRAP04437 139 aa15.97■□□□□ 0.15
VPS28-208ENST00000527797 EDN2P20800 178 aa15.97■□□□□ 0.15
VPS28-208ENST00000527797 CNN1P51911 297 aaKnown RBP15.97■□□□□ 0.15
VPS28-208ENST00000527797 PNRC1Q12796 327 aaPredicted RBP15.97■□□□□ 0.15
VPS28-208ENST00000527797 ATRAIDQ6UW56 229 aa15.97■□□□□ 0.15
VPS28-208ENST00000527797 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP15.97■□□□□ 0.15
VPS28-208ENST00000527797 ATG101Q9BSB4 218 aa15.97■□□□□ 0.15
VPS28-208ENST00000527797 ZNF331Q9NQX6 463 aaPredicted RBP15.97■□□□□ 0.15
VPS28-208ENST00000527797 PEMTQ9UBM1 199 aa15.97■□□□□ 0.15
VPS28-208ENST00000527797 CCL24O00175 119 aa15.97■□□□□ 0.15
VPS28-208ENST00000527797 FOXL1Q12952 345 aa15.97■□□□□ 0.15
VPS28-208ENST00000527797 AWAT1Q58HT5 328 aa15.97■□□□□ 0.15
VPS28-208ENST00000527797 C2orf70A6NJV1 201 aa15.96■□□□□ 0.15
VPS28-208ENST00000527797 M0QZ24 198 aa15.96■□□□□ 0.15
VPS28-208ENST00000527797 CBLN1P23435 193 aa15.96■□□□□ 0.15
VPS28-208ENST00000527797 CSN1S1P47710 185 aa15.96■□□□□ 0.15
VPS28-208ENST00000527797 RPL11P62913 178 aaKnown RBP15.96■□□□□ 0.15
VPS28-208ENST00000527797 DLX4Q92988 240 aaPredicted RBP15.96■□□□□ 0.15
VPS28-208ENST00000527797 TAS2R60P59551 318 aa15.95■□□□□ 0.14
VPS28-208ENST00000527797 FHL3Q13643 280 aa15.95■□□□□ 0.14
VPS28-208ENST00000527797 C9JCJ5 164 aa15.94■□□□□ 0.14
VPS28-208ENST00000527797 SCO1O75880 301 aa15.94■□□□□ 0.14
VPS28-208ENST00000527797 S100A9P06702 114 aaKnown RBP15.94■□□□□ 0.14
VPS28-208ENST00000527797 FOLR2P14207 255 aa15.94■□□□□ 0.14
VPS28-208ENST00000527797 KRTAP10-3P60369 221 aa15.94■□□□□ 0.14
VPS28-208ENST00000527797 TCF24Q7RTU0 167 aa15.94■□□□□ 0.14
VPS28-208ENST00000527797 ARL6IP6Q8N6S5 226 aa15.94■□□□□ 0.14
VPS28-208ENST00000527797 OR9G4Q8NGQ1 327 aa15.94■□□□□ 0.14
VPS28-208ENST00000527797 LINC00479Q96M42 142 aa15.94■□□□□ 0.14
VPS28-208ENST00000527797 TRBV20OR9-2A0A075B6H5 130 aa15.94■□□□□ 0.14
VPS28-208ENST00000527797 M0R3E3 92 aa15.94■□□□□ 0.14
VPS28-208ENST00000527797 UBE2G1P62253 170 aa15.94■□□□□ 0.14
VPS28-208ENST00000527797 RPL23P62829 140 aaKnown RBP15.94■□□□□ 0.14
VPS28-208ENST00000527797 ADIRFQ15847 76 aa15.94■□□□□ 0.14
VPS28-208ENST00000527797 IGFL4Q6B9Z1 124 aa15.94■□□□□ 0.14
VPS28-208ENST00000527797 NDUFA11Q86Y39 141 aa15.94■□□□□ 0.14
VPS28-208ENST00000527797 NRN1Q9NPD7 142 aa15.94■□□□□ 0.14
VPS28-208ENST00000527797 PRELID1Q9Y255 219 aa15.94■□□□□ 0.14
VPS28-208ENST00000527797 TRAV34A0A0B4J273 112 aa15.93■□□□□ 0.14
VPS28-208ENST00000527797 C7orf77A4D0Y5 90 aa15.93■□□□□ 0.14
VPS28-208ENST00000527797 DIRC3C9JPN6 131 aa15.93■□□□□ 0.14
VPS28-208ENST00000527797 K7EQM0 130 aa15.93■□□□□ 0.14
VPS28-208ENST00000527797 GNG4P50150 75 aa15.93■□□□□ 0.14
VPS28-208ENST00000527797 RHEBQ15382 184 aa15.93■□□□□ 0.14
VPS28-208ENST00000527797 TMEM183BQ1AE95 376 aa15.93■□□□□ 0.14
VPS28-208ENST00000527797 NSUN5P1Q3KNT7 163 aa15.93■□□□□ 0.14
VPS28-208ENST00000527797 GOLT1AQ6ZVE7 132 aa15.93■□□□□ 0.14
VPS28-208ENST00000527797 C16orf92Q96LL3 132 aa15.93■□□□□ 0.14
VPS28-208ENST00000527797 RPS10P5Q9NQ39 176 aa15.93■□□□□ 0.14
VPS28-208ENST00000527797 CLEC5AQ9NY25 188 aa15.93■□□□□ 0.14
VPS28-208ENST00000527797 KLF12Q9Y4X4 402 aa15.93■□□□□ 0.14
VPS28-208ENST00000527797 CUBNO60494 3623 aa15.93■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms