RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 DSCR9P59020 149 aa6.95□□□□□ -1.3
LIMCH1-209ENST00000509277 SRSF7Q16629 238 aaKnown RBP eCLIP6.95□□□□□ -1.3
LIMCH1-209ENST00000509277 RTL8BQ17RB0 113 aa6.95□□□□□ -1.3
LIMCH1-209ENST00000509277 SIGMAR1Q99720 223 aa6.95□□□□□ -1.3
LIMCH1-209ENST00000509277 WNK1Q9H4A3 2382 aa6.95□□□□□ -1.3
LIMCH1-209ENST00000509277 IGKV1-39P01597 117 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 IGKV1D-39P04432 117 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 CNTFRP26992 372 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 CRYBA4P53673 196 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 ATP5G2Q06055 141 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 FOXL1Q12952 345 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 ETDBQ3ZM63 59 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 SH2D6Q7Z4S9 175 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 LINC01356Q8N9X3 169 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 C18orf15Q96N68 181 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 CHTOPQ9Y3Y2 248 aaKnown RBP6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 K7ERJ3 54 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 PROP1O75360 226 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 CR1LQ2VPA4 569 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 MIR17HGQ75NE6 70 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 EAF1Q96JC9 268 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 C19orf24Q9BVV8 132 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 NCOR1P1Q9H4R4 102 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 CTNNBIP1Q9NSA3 81 aaPredicted RBP6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 DPM3Q9P2X0 92 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 NF1P21359 2839 aa6.94□□□□□ -1.3
LIMCH1-209ENST00000509277 IGHV3-21A0A0B4J1V1 117 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 LINC00869P0C866 280 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 CGB3P0DN86 165 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 CGB7P0DN87 165 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 PRTN3P24158 256 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 DUTP33316 252 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 SLC25A48Q6ZT89 311 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 LINC00527Q9UJ94 153 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 BUB1B-PAK6H3BSN5 160 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 TOMM40O96008 361 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 BCL6BQ8N143 479 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 C18orf32Q8TCD1 76 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 FLYWCH2Q96CP2 140 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 DAZAP1Q96EP5 407 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 MAP1LC3CQ9BXW4 147 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 TTTY13Q9BZ97 58 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 MRPS16Q9Y3D3 137 aaKnown RBP6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 TRAV3A0A0B4J244 114 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 A0A0G2JLM5 398 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 CT45A6P0DMU7 189 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 CT45A5P0DMU8 189 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 CT45A7P0DMV0 189 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 FABP2P12104 132 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 HOXB4P17483 251 aaPredicted RBP6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 C10orf55Q5SWW7 151 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 PRSS3P2Q8NHM4 247 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 RITA1Q96K30 269 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 FBXL15Q9H469 300 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 NPVFQ9HCQ7 196 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 HIVEP1P15822 2718 aa6.93□□□□□ -1.3
LIMCH1-209ENST00000509277 GCHFRP30047 84 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 CTRLP40313 264 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 FOXE3Q13461 319 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 RAB31Q13636 194 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 FAM120AOSQ5T036 256 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 NIPBLQ6KC79 2804 aaeCLIP6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 Q6ZS49 121 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 DYNAPQ8N1N2 210 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 OR52E5Q8NH55 327 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 HSPB8Q9UJY1 196 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 PDZD2O15018 2839 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 HIGD1CA8MV81 97 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 NPFFO15130 113 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 IGLV2-14P01704 120 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 AMY1AP04745 511 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 REG1AP05451 166 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 DLX6P56179 175 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 GNG5P63218 68 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 SRSF2Q01130 221 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 KIR3DS1Q14943 382 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 PSG3Q16557 428 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 SPATA12Q7Z6I5 190 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 KCNIP2Q9NS61 270 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 AMMECR1Q9Y4X0 333 aaPredicted RBP6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 MXRA5Q9NR99 2828 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 IGHV1-3A0A0C4DH29 117 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 CENPVL3A0A0U1RRI6 287 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 A0A1W2PRE2 83 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 HLA-DQA1P01909 254 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 IGHV4-31P0DP07 118 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 UBE2L3P68036 154 aaKnown RBP6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 TMEM144Q7Z5S9 345 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 C3orf56Q8N813 242 aa6.92□□□□□ -1.3
LIMCH1-209ENST00000509277 CXorf1O96002 111 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 YPEL3P61236 119 aaPredicted RBP6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 TMEM97Q5BJF2 176 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 TPSG1Q9NRR2 321 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 NHP2Q9NX24 153 aaKnown RBP6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 TRAV5A0A0B4J249 113 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 TMEM238LA0A1B0GVL6 79 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 H3BUX3 64 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 MLANAQ16655 118 aa6.91□□□□□ -1.3
LIMCH1-209ENST00000509277 ZNF585BQ52M93 769 aa6.91□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 63.3 ms