RNA–Protein interactions for RNA: ENST00000497815.5

CUX1-210, Transcript of cut like homeobox 1, humanhuman

TSL 2

Gene CUX1, Length 947 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-210ENST00000497815 RAB24Q969Q5 203 aa8.87□□□□□ -0.99
CUX1-210ENST00000497815 LINC00052Q96N35 136 aa8.87□□□□□ -0.99
CUX1-210ENST00000497815 PAXXQ9BUH6 204 aa8.87□□□□□ -0.99
CUX1-210ENST00000497815 ACTR3CQ9C0K3 210 aaPredicted RBP8.87□□□□□ -0.99
CUX1-210ENST00000497815 OR51M1Q9H341 326 aa8.87□□□□□ -0.99
CUX1-210ENST00000497815 MAP6D1Q9H9H5 199 aa8.87□□□□□ -0.99
CUX1-210ENST00000497815 TMEM14CQ9P0S9 112 aa8.87□□□□□ -0.99
CUX1-210ENST00000497815 A0A087X0K7 114 aa8.86□□□□□ -0.99
CUX1-210ENST00000497815 SOCS3O14543 225 aa8.86□□□□□ -0.99
CUX1-210ENST00000497815 ID1P41134 155 aa8.86□□□□□ -0.99
CUX1-210ENST00000497815 MEOX2P50222 304 aa8.86□□□□□ -0.99
CUX1-210ENST00000497815 SNRPD3P62318 126 aaKnown RBP8.86□□□□□ -0.99
CUX1-210ENST00000497815 UBE2L3P68036 154 aaKnown RBP8.86□□□□□ -0.99
CUX1-210ENST00000497815 ZNF124Q15973 351 aa8.86□□□□□ -0.99
CUX1-210ENST00000497815 SSX7Q7RTT5 188 aa8.86□□□□□ -0.99
CUX1-210ENST00000497815 RNF182Q8N6D2 247 aa8.86□□□□□ -0.99
CUX1-210ENST00000497815 RNF141Q8WVD5 230 aa8.86□□□□□ -0.99
CUX1-210ENST00000497815 ZNF503Q96F45 646 aa8.86□□□□□ -0.99
CUX1-210ENST00000497815 HRH4Q9H3N8 390 aa8.86□□□□□ -0.99
CUX1-210ENST00000497815 ZNF586Q9NXT0 402 aa8.86□□□□□ -0.99
CUX1-210ENST00000497815 TRAV8-2A0A0B4J237 113 aa8.85□□□□□ -0.99
CUX1-210ENST00000497815 SLC17A3O00476 420 aa8.85□□□□□ -0.99
CUX1-210ENST00000497815 ARL14EPLP0DKL9 152 aa8.85□□□□□ -0.99
CUX1-210ENST00000497815 PRB4P10163 310 aaPredicted RBP8.85□□□□□ -0.99
CUX1-210ENST00000497815 HIST1H1EP10412 219 aaKnown RBP8.85□□□□□ -0.99
CUX1-210ENST00000497815 HLA-DMBP28068 263 aa8.85□□□□□ -0.99
CUX1-210ENST00000497815 PSMB3P49720 205 aa8.85□□□□□ -0.99
CUX1-210ENST00000497815 FHITP49789 147 aa8.85□□□□□ -0.99
CUX1-210ENST00000497815 ZNF726P1Q15940 193 aa8.85□□□□□ -0.99
CUX1-210ENST00000497815 EIF5AL1Q6IS14 154 aaKnown RBP8.85□□□□□ -0.99
CUX1-210ENST00000497815 LCN15Q6UWW0 184 aa8.85□□□□□ -0.99
CUX1-210ENST00000497815 IQCF2Q8IXL9 164 aa8.85□□□□□ -0.99
CUX1-210ENST00000497815 FAM213BQ8TBF2 198 aa8.85□□□□□ -0.99
CUX1-210ENST00000497815 MRAPQ8TCY5 172 aa8.85□□□□□ -0.99
CUX1-210ENST00000497815 FXYD5Q96DB9 178 aa8.85□□□□□ -0.99
CUX1-210ENST00000497815 TUBA4BQ9H853 241 aa8.85□□□□□ -0.99
CUX1-210ENST00000497815 C19orf73Q9NVV2 129 aa8.85□□□□□ -0.99
CUX1-210ENST00000497815 TRBV19A0A075B6N1 114 aa8.84□□□□□ -0.99
CUX1-210ENST00000497815 CTXND1A0A1B0GTU2 59 aa8.84□□□□□ -0.99
CUX1-210ENST00000497815 UMAD1C9J7I0 102 aa8.84□□□□□ -0.99
CUX1-210ENST00000497815 ISLRO14498 428 aa8.84□□□□□ -0.99
CUX1-210ENST00000497815 NBEAP1P0C6P0 100 aa8.84□□□□□ -0.99
CUX1-210ENST00000497815 IGHV4-30-4P0DP06 118 aa8.84□□□□□ -0.99
CUX1-210ENST00000497815 CMC4P56277 68 aaPredicted RBP8.84□□□□□ -0.99
CUX1-210ENST00000497815 DEFB1P60022 68 aa8.84□□□□□ -0.99
CUX1-210ENST00000497815 GUK1Q16774 197 aa8.84□□□□□ -0.99
CUX1-210ENST00000497815 SAMD13Q5VXD3 122 aa8.84□□□□□ -0.99
CUX1-210ENST00000497815 C20orf173Q96LM9 149 aa8.84□□□□□ -0.99
CUX1-210ENST00000497815 SRD5A3Q9H8P0 318 aa8.84□□□□□ -0.99
CUX1-210ENST00000497815 NBEAL1Q6ZS30 2694 aa8.84□□□□□ -0.99
CUX1-210ENST00000497815 A0A1B0GV50 99 aa8.83□□□□□ -1
CUX1-210ENST00000497815 KNCNA6PVL3 124 aa8.83□□□□□ -1
CUX1-210ENST00000497815 STAG3L2P0CL84 134 aa8.83□□□□□ -1
CUX1-210ENST00000497815 STAG3L3P0CL85 134 aa8.83□□□□□ -1
CUX1-210ENST00000497815 FGF8P55075 233 aaPredicted RBP8.83□□□□□ -1
CUX1-210ENST00000497815 FAM74A1Q5RGS3 127 aa8.83□□□□□ -1
CUX1-210ENST00000497815 ALKAL2Q6UX46 152 aa8.83□□□□□ -1
CUX1-210ENST00000497815 PQLC2Q6ZP29 291 aa8.83□□□□□ -1
CUX1-210ENST00000497815 SAT2Q96F10 170 aaPredicted RBP8.83□□□□□ -1
CUX1-210ENST00000497815 CITED4Q96RK1 184 aa8.83□□□□□ -1
CUX1-210ENST00000497815 SLC50A1Q9BRV3 221 aa8.83□□□□□ -1
CUX1-210ENST00000497815 ZNF331Q9NQX6 463 aaPredicted RBP8.83□□□□□ -1
CUX1-210ENST00000497815 MAP1LC3B2A6NCE7 125 aa8.82□□□□□ -1
CUX1-210ENST00000497815 NDUFB4O95168 129 aa8.82□□□□□ -1
CUX1-210ENST00000497815 CXorf1O96002 111 aa8.82□□□□□ -1
CUX1-210ENST00000497815 GCHFRP30047 84 aa8.82□□□□□ -1
CUX1-210ENST00000497815 RANP62826 216 aaKnown RBP8.82□□□□□ -1
CUX1-210ENST00000497815 ACTL10Q5JWF8 245 aa8.82□□□□□ -1
CUX1-210ENST00000497815 EXOC3-AS1Q8N2X6 119 aa8.82□□□□□ -1
CUX1-210ENST00000497815 ZNF738Q8NE65 137 aa8.82□□□□□ -1
CUX1-210ENST00000497815 PHYHIPLQ96FC7 376 aa8.82□□□□□ -1
CUX1-210ENST00000497815 FAM110AQ9BQ89 295 aa8.82□□□□□ -1
CUX1-210ENST00000497815 MAP1LC3BQ9GZQ8 125 aa8.82□□□□□ -1
CUX1-210ENST00000497815 NOTCH1P46531 2555 aa8.81□□□□□ -1
CUX1-210ENST00000497815 ZNF705FA8MVS1 300 aaPredicted RBP8.81□□□□□ -1
CUX1-210ENST00000497815 F6UB75 175 aa8.81□□□□□ -1
CUX1-210ENST00000497815 ZNF253O75346 499 aa8.81□□□□□ -1
CUX1-210ENST00000497815 FRMD6-AS1P0C7T7 363 aa8.81□□□□□ -1
CUX1-210ENST00000497815 RPL35AP18077 110 aaKnown RBP8.81□□□□□ -1
CUX1-210ENST00000497815 PSG9Q00887 426 aa8.81□□□□□ -1
CUX1-210ENST00000497815 ICAM4Q14773 271 aa8.81□□□□□ -1
CUX1-210ENST00000497815 PSG3Q16557 428 aa8.81□□□□□ -1
CUX1-210ENST00000497815 DPPA3Q6W0C5 159 aa8.81□□□□□ -1
CUX1-210ENST00000497815 SFT2D1Q8WV19 159 aa8.81□□□□□ -1
CUX1-210ENST00000497815 TMPRSS5Q9H3S3 457 aa8.81□□□□□ -1
CUX1-210ENST00000497815 RBMY1BA6NDE4 496 aaKnown RBP8.8□□□□□ -1
CUX1-210ENST00000497815 RBMY1EA6NEQ0 496 aaKnown RBP8.8□□□□□ -1
CUX1-210ENST00000497815 IGKV3-20P01619 116 aa8.8□□□□□ -1
CUX1-210ENST00000497815 H2AFB1P0C5Y9 115 aa8.8□□□□□ -1
CUX1-210ENST00000497815 RBMY1DP0C7P1 496 aaKnown RBP8.8□□□□□ -1
CUX1-210ENST00000497815 ZNF705DP0CH99 300 aaPredicted RBP8.8□□□□□ -1
CUX1-210ENST00000497815 ZNF705BP0CI00 300 aaPredicted RBP8.8□□□□□ -1
CUX1-210ENST00000497815 SULT1A2P50226 295 aa8.8□□□□□ -1
CUX1-210ENST00000497815 RAB5CP51148 216 aa8.8□□□□□ -1
CUX1-210ENST00000497815 PDE6HQ13956 83 aa8.8□□□□□ -1
CUX1-210ENST00000497815 GDF5OSQ5U4N7 250 aa8.8□□□□□ -1
CUX1-210ENST00000497815 STHQ8IWL8 128 aa8.8□□□□□ -1
CUX1-210ENST00000497815 RPUSD4Q96CM3 377 aaKnown RBP8.8□□□□□ -1
CUX1-210ENST00000497815 AAMDCQ9H7C9 122 aa8.8□□□□□ -1
CUX1-210ENST00000497815 FBN3Q75N90 2809 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 62.8 ms