RNA–Protein interactions for RNA: ENST00000469003.5

CCDC28B-204, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 2

Gene CCDC28B, Length 1,235 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-204ENST00000469003 MRPS12O15235 138 aaKnown RBP11.73□□□□□ -0.53
CCDC28B-204ENST00000469003 MBPP02686 304 aaPredicted RBP11.73□□□□□ -0.53
CCDC28B-204ENST00000469003 TSPOP30536 169 aa11.73□□□□□ -0.53
CCDC28B-204ENST00000469003 HIST1H1AQ02539 215 aaPredicted RBP11.73□□□□□ -0.53
CCDC28B-204ENST00000469003 ARL16Q0P5N6 197 aa11.73□□□□□ -0.53
CCDC28B-204ENST00000469003 PSG3Q16557 428 aa11.73□□□□□ -0.53
CCDC28B-204ENST00000469003 RNF212Q495C1 297 aa11.73□□□□□ -0.53
CCDC28B-204ENST00000469003 TMEM88Q6PEY1 159 aa11.73□□□□□ -0.53
CCDC28B-204ENST00000469003 LRRC20Q8TCA0 184 aa11.73□□□□□ -0.53
CCDC28B-204ENST00000469003 FAT2Q9NYQ8 4349 aa11.73□□□□□ -0.53
CCDC28B-204ENST00000469003 DNAH17Q9UFH2 4485 aa11.72□□□□□ -0.53
CCDC28B-204ENST00000469003 TRAV12-2A0A075B6T6 113 aa11.72□□□□□ -0.53
CCDC28B-204ENST00000469003 C7orf66A4D0T2 115 aa11.72□□□□□ -0.53
CCDC28B-204ENST00000469003 GOSR2O14653 212 aa11.72□□□□□ -0.53
CCDC28B-204ENST00000469003 AGPAT2O15120 278 aa11.72□□□□□ -0.53
CCDC28B-204ENST00000469003 RTL8CO15255 209 aa11.72□□□□□ -0.53
CCDC28B-204ENST00000469003 PRM2P04554 102 aa11.72□□□□□ -0.53
CCDC28B-204ENST00000469003 CXCL2P19875 107 aa11.72□□□□□ -0.53
CCDC28B-204ENST00000469003 RHOBP62745 196 aa11.72□□□□□ -0.53
CCDC28B-204ENST00000469003 C20orf85Q9H1P6 137 aa11.72□□□□□ -0.53
CCDC28B-204ENST00000469003 DNAH2Q9P225 4427 aa11.72□□□□□ -0.53
CCDC28B-204ENST00000469003 PRSS29PA6NIE9 313 aa11.71□□□□□ -0.53
CCDC28B-204ENST00000469003 PLA2G10O15496 165 aa11.71□□□□□ -0.53
CCDC28B-204ENST00000469003 LCN15Q6UWW0 184 aa11.71□□□□□ -0.53
CCDC28B-204ENST00000469003 LINC00305Q7Z4B0 112 aa11.71□□□□□ -0.53
CCDC28B-204ENST00000469003 TMEM256Q8N2U0 113 aa11.71□□□□□ -0.53
CCDC28B-204ENST00000469003 PPP1R14DQ9NXH3 145 aa11.71□□□□□ -0.53
CCDC28B-204ENST00000469003 PLAC8L1A1L4L8 177 aa11.7□□□□□ -0.54
CCDC28B-204ENST00000469003 L7N2F9 121 aa11.7□□□□□ -0.54
CCDC28B-204ENST00000469003 CCSO14618 274 aa11.7□□□□□ -0.54
CCDC28B-204ENST00000469003 LYRM1O43325 122 aa11.7□□□□□ -0.54
CCDC28B-204ENST00000469003 AZU1P20160 251 aa11.7□□□□□ -0.54
CCDC28B-204ENST00000469003 VAMP2P63027 116 aa11.7□□□□□ -0.54
CCDC28B-204ENST00000469003 ZNF846Q147U1 533 aa11.7□□□□□ -0.54
CCDC28B-204ENST00000469003 Q6ZR54 194 aa11.7□□□□□ -0.54
CCDC28B-204ENST00000469003 C15orf53Q8NAA6 179 aa11.7□□□□□ -0.54
CCDC28B-204ENST00000469003 RPUSD4Q96CM3 377 aaKnown RBP11.7□□□□□ -0.54
CCDC28B-204ENST00000469003 LINC01587Q99440 93 aa11.7□□□□□ -0.54
CCDC28B-204ENST00000469003 MGST2Q99735 147 aa11.7□□□□□ -0.54
CCDC28B-204ENST00000469003 SLC50A1Q9BRV3 221 aa11.7□□□□□ -0.54
CCDC28B-204ENST00000469003 ZNF331Q9NQX6 463 aaPredicted RBP11.7□□□□□ -0.54
CCDC28B-204ENST00000469003 IGLV2-18A0A075B6J9 118 aa11.69□□□□□ -0.54
CCDC28B-204ENST00000469003 COX7A2P2O60397 106 aa11.69□□□□□ -0.54
CCDC28B-204ENST00000469003 TAS2R60P59551 318 aa11.69□□□□□ -0.54
CCDC28B-204ENST00000469003 BPIFA4PQ86YQ2 179 aa11.69□□□□□ -0.54
CCDC28B-204ENST00000469003 NACAE9PAV3 2078 aa11.69□□□□□ -0.54
CCDC28B-204ENST00000469003 TCRBP04435 133 aa11.68□□□□□ -0.54
CCDC28B-204ENST00000469003 DEFB130BP0DP73 79 aa11.68□□□□□ -0.54
CCDC28B-204ENST00000469003 DEFB130AP0DP74 79 aa11.68□□□□□ -0.54
CCDC28B-204ENST00000469003 CDKN1BP46527 198 aa11.68□□□□□ -0.54
CCDC28B-204ENST00000469003 TMEM37Q8WXS4 190 aa11.68□□□□□ -0.54
CCDC28B-204ENST00000469003 LSM5Q9Y4Y9 91 aaKnown RBP11.68□□□□□ -0.54
CCDC28B-204ENST00000469003 FAM25EA8MYX2 175 aa11.67□□□□□ -0.54
CCDC28B-204ENST00000469003 PRB4P10163 310 aaPredicted RBP11.67□□□□□ -0.54
CCDC28B-204ENST00000469003 BCAP31P51572 246 aa11.67□□□□□ -0.54
CCDC28B-204ENST00000469003 FAM3BP58499 235 aaPredicted RBP11.67□□□□□ -0.54
CCDC28B-204ENST00000469003 FCN2Q15485 313 aa11.67□□□□□ -0.54
CCDC28B-204ENST00000469003 MORN5Q5VZ52 161 aa11.67□□□□□ -0.54
CCDC28B-204ENST00000469003 C10orf113Q5VZT2 155 aa11.67□□□□□ -0.54
CCDC28B-204ENST00000469003 ZNF431Q8TF32 576 aaPredicted RBP11.67□□□□□ -0.54
CCDC28B-204ENST00000469003 C16orf74Q96GX8 76 aa11.67□□□□□ -0.54
CCDC28B-204ENST00000469003 C11orf1Q9H5F2 150 aa11.67□□□□□ -0.54
CCDC28B-204ENST00000469003 TRAV6A0A075B6T7 132 aa11.66□□□□□ -0.54
CCDC28B-204ENST00000469003 C5orf51A6NDU8 294 aa11.66□□□□□ -0.54
CCDC28B-204ENST00000469003 SNRPCP09234 159 aaKnown RBP11.66□□□□□ -0.54
CCDC28B-204ENST00000469003 MED14OSP0DP75 135 aa11.66□□□□□ -0.54
CCDC28B-204ENST00000469003 CAMLGP49069 296 aa11.66□□□□□ -0.54
CCDC28B-204ENST00000469003 CAV2P51636 162 aa11.66□□□□□ -0.54
CCDC28B-204ENST00000469003 RAB31Q13636 194 aa11.66□□□□□ -0.54
CCDC28B-204ENST00000469003 OPCMLQ14982 345 aa11.66□□□□□ -0.54
CCDC28B-204ENST00000469003 C20orf144Q9BQM9 153 aa11.66□□□□□ -0.54
CCDC28B-204ENST00000469003 SEC22CQ9BRL7 303 aa11.66□□□□□ -0.54
CCDC28B-204ENST00000469003 DNAJC4Q9NNZ3 241 aa11.66□□□□□ -0.54
CCDC28B-204ENST00000469003 NDUFA13Q9P0J0 144 aa11.66□□□□□ -0.54
CCDC28B-204ENST00000469003 PXMP4Q9Y6I8 212 aa11.66□□□□□ -0.54
CCDC28B-204ENST00000469003 ABCA13Q86UQ4 5058 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 CBY3A6NI87 242 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 F5H768 121 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 SLC17A3O00476 420 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 CST7O76096 145 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 ATP5G1P05496 136 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 IGLC2P0DOY2 106 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 HTN1P15515 57 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 ATP5G3P48201 142 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 SOHLH1Q5JUK2 328 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 ZNF493Q6ZR52 646 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 Q6ZRG5 221 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 NRARPQ7Z6K4 114 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 C12orf45Q8N5I9 185 aaPredicted RBP11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 OR10J6PQ8NGY7 276 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 C2orf50Q96LR7 162 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 NUDT15Q9NV35 164 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 UQCC1Q9NVA1 299 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 WDR83OSQ9Y284 106 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 TIMM8BQ9Y5J9 83 aaPredicted RBP11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 PKHD1P08F94 4074 aa11.65□□□□□ -0.54
CCDC28B-204ENST00000469003 FAM24AA6NFZ4 105 aa11.64□□□□□ -0.55
CCDC28B-204ENST00000469003 H3BTX0 84 aa11.64□□□□□ -0.55
CCDC28B-204ENST00000469003 H7BYZ3 331 aa11.64□□□□□ -0.55
CCDC28B-204ENST00000469003 PVALBP20472 110 aaPredicted RBP11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms