RNA–Protein interactions for RNA: ENST00000428678.1

UPK3BP1-201, Transcript of uroplakin 3B pseudogene 1, humanhuman

BASIC

Gene UPK3BP1, Length 509 nt, Biotype transcribed unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPK3BP1-201ENST00000428678 MRPS16Q9Y3D3 137 aaKnown RBP12.66□□□□□ -0.38
UPK3BP1-201ENST00000428678 GAGE12BA1L429 117 aa12.65□□□□□ -0.38
UPK3BP1-201ENST00000428678 HYPMO75409 117 aa12.65□□□□□ -0.38
UPK3BP1-201ENST00000428678 GAGE7O76087 117 aa12.65□□□□□ -0.38
UPK3BP1-201ENST00000428678 OR5G3P0C626 314 aa12.65□□□□□ -0.38
UPK3BP1-201ENST00000428678 GAGE12FP0CL80 117 aa12.65□□□□□ -0.38
UPK3BP1-201ENST00000428678 GAGE12GP0CL81 117 aa12.65□□□□□ -0.38
UPK3BP1-201ENST00000428678 GAGE12IP0CL82 117 aa12.65□□□□□ -0.38
UPK3BP1-201ENST00000428678 SLC25A6P12236 298 aa12.65□□□□□ -0.38
UPK3BP1-201ENST00000428678 HOXA5P20719 270 aa12.65□□□□□ -0.38
UPK3BP1-201ENST00000428678 VAMP1P23763 118 aa12.65□□□□□ -0.38
UPK3BP1-201ENST00000428678 A0A087X0K7 114 aa12.64□□□□□ -0.39
UPK3BP1-201ENST00000428678 RLN2P04090 185 aa12.64□□□□□ -0.39
UPK3BP1-201ENST00000428678 LINC00869P0C866 280 aa12.64□□□□□ -0.39
UPK3BP1-201ENST00000428678 INAFM2P0DMQ5 153 aa12.64□□□□□ -0.39
UPK3BP1-201ENST00000428678 CCDC28AQ8IWP9 274 aa12.64□□□□□ -0.39
UPK3BP1-201ENST00000428678 STRAPQ9Y3F4 350 aaKnown RBP12.64□□□□□ -0.39
UPK3BP1-201ENST00000428678 SRRM2Q9UQ35 2752 aaKnown RBP12.64□□□□□ -0.39
UPK3BP1-201ENST00000428678 LINC00315P59091 139 aa12.63□□□□□ -0.39
UPK3BP1-201ENST00000428678 KIR3DS1Q14943 382 aa12.63□□□□□ -0.39
UPK3BP1-201ENST00000428678 SPCS2Q15005 226 aa12.63□□□□□ -0.39
UPK3BP1-201ENST00000428678 TMEM128Q5BJH2 165 aa12.63□□□□□ -0.39
UPK3BP1-201ENST00000428678 LINC00612Q8N6U2 182 aa12.63□□□□□ -0.39
UPK3BP1-201ENST00000428678 LRTM2Q8N967 370 aa12.63□□□□□ -0.39
UPK3BP1-201ENST00000428678 RSL24D1Q9UHA3 163 aaKnown RBP12.63□□□□□ -0.39
UPK3BP1-201ENST00000428678 FLG2Q5D862 2391 aaPredicted RBP12.62□□□□□ -0.39
UPK3BP1-201ENST00000428678 SNURFLB1AK76 121 aa12.62□□□□□ -0.39
UPK3BP1-201ENST00000428678 S100A7AQ86SG5 101 aa12.62□□□□□ -0.39
UPK3BP1-201ENST00000428678 C20orf144Q9BQM9 153 aa12.62□□□□□ -0.39
UPK3BP1-201ENST00000428678 PARD6GQ9BYG4 376 aaPredicted RBP12.62□□□□□ -0.39
UPK3BP1-201ENST00000428678 PTTG2Q9NZH5 202 aa12.62□□□□□ -0.39
UPK3BP1-201ENST00000428678 H3BNG1 76 aa12.61□□□□□ -0.39
UPK3BP1-201ENST00000428678 HOXB5P09067 269 aa12.61□□□□□ -0.39
UPK3BP1-201ENST00000428678 SMIM18P0DKX4 95 aa12.61□□□□□ -0.39
UPK3BP1-201ENST00000428678 ANXA7P20073 488 aaKnown RBP12.61□□□□□ -0.39
UPK3BP1-201ENST00000428678 FUSP35637 526 aaKnown RBP eCLIP12.61□□□□□ -0.39
UPK3BP1-201ENST00000428678 SELENOTP62341 195 aa12.61□□□□□ -0.39
UPK3BP1-201ENST00000428678 GFI1BQ5VTD9 330 aa12.61□□□□□ -0.39
UPK3BP1-201ENST00000428678 CCDC190Q86UF4 302 aa12.61□□□□□ -0.39
UPK3BP1-201ENST00000428678 TMPRSS5Q9H3S3 457 aa12.61□□□□□ -0.39
UPK3BP1-201ENST00000428678 MYCBP2O75592 4640 aa12.61□□□□□ -0.39
UPK3BP1-201ENST00000428678 FAT1Q14517 4588 aa12.61□□□□□ -0.39
UPK3BP1-201ENST00000428678 PMS2P5A8MQ11 134 aa12.6□□□□□ -0.39
UPK3BP1-201ENST00000428678 SNRPCP09234 159 aaKnown RBP12.6□□□□□ -0.39
UPK3BP1-201ENST00000428678 FAUP35544 74 aaKnown RBP12.6□□□□□ -0.39
UPK3BP1-201ENST00000428678 PLP1P60201 277 aa12.6□□□□□ -0.39
UPK3BP1-201ENST00000428678 ARL6Q9H0F7 186 aa12.6□□□□□ -0.39
UPK3BP1-201ENST00000428678 PGPEP1Q9NXJ5 209 aa12.6□□□□□ -0.39
UPK3BP1-201ENST00000428678 J3KRW8 73 aa12.59□□□□□ -0.39
UPK3BP1-201ENST00000428678 EREGO14944 169 aa12.59□□□□□ -0.39
UPK3BP1-201ENST00000428678 LCN15Q6UWW0 184 aa12.59□□□□□ -0.39
UPK3BP1-201ENST00000428678 Q6ZRN7 208 aaPredicted RBP12.59□□□□□ -0.39
UPK3BP1-201ENST00000428678 ZNF331Q9NQX6 463 aaPredicted RBP12.59□□□□□ -0.39
UPK3BP1-201ENST00000428678 SFT2D2O95562 160 aa12.58□□□□□ -0.4
UPK3BP1-201ENST00000428678 CXCL2P19875 107 aa12.58□□□□□ -0.4
UPK3BP1-201ENST00000428678 RRAS2P62070 204 aaPredicted RBP12.58□□□□□ -0.4
UPK3BP1-201ENST00000428678 PPP1R1AQ13522 171 aa12.58□□□□□ -0.4
UPK3BP1-201ENST00000428678 PATE2Q6UY27 113 aa12.58□□□□□ -0.4
UPK3BP1-201ENST00000428678 LYPD1Q8N2G4 141 aa12.58□□□□□ -0.4
UPK3BP1-201ENST00000428678 ARV1Q9H2C2 271 aa12.58□□□□□ -0.4
UPK3BP1-201ENST00000428678 PSENENQ9NZ42 101 aa12.58□□□□□ -0.4
UPK3BP1-201ENST00000428678 CCDC59Q9P031 241 aaKnown RBP12.58□□□□□ -0.4
UPK3BP1-201ENST00000428678 RNF24Q9Y225 148 aa12.58□□□□□ -0.4
UPK3BP1-201ENST00000428678 VPS13BQ7Z7G8 4022 aa12.58□□□□□ -0.4
UPK3BP1-201ENST00000428678 A0A096LPF7 62 aa12.57□□□□□ -0.4
UPK3BP1-201ENST00000428678 PRAC2D3DTV9 90 aa12.57□□□□□ -0.4
UPK3BP1-201ENST00000428678 MRPS12O15235 138 aaKnown RBP12.57□□□□□ -0.4
UPK3BP1-201ENST00000428678 ERVFC1-1P60608 527 aa12.57□□□□□ -0.4
UPK3BP1-201ENST00000428678 POLR2GP62487 172 aaKnown RBP eCLIP12.57□□□□□ -0.4
UPK3BP1-201ENST00000428678 Q5VSD8 79 aa12.57□□□□□ -0.4
UPK3BP1-201ENST00000428678 Q6ZTI0 123 aa12.57□□□□□ -0.4
UPK3BP1-201ENST00000428678 SLC50A1Q9BRV3 221 aa12.57□□□□□ -0.4
UPK3BP1-201ENST00000428678 TRAV12-3A0A0B4J271 114 aa12.56□□□□□ -0.4
UPK3BP1-201ENST00000428678 FABP12A6NFH5 140 aa12.56□□□□□ -0.4
UPK3BP1-201ENST00000428678 SIVA1O15304 175 aa12.56□□□□□ -0.4
UPK3BP1-201ENST00000428678 XGP55808 180 aa12.56□□□□□ -0.4
UPK3BP1-201ENST00000428678 DYNC2LI1Q8TCX1 351 aa12.56□□□□□ -0.4
UPK3BP1-201ENST00000428678 FRZBQ92765 325 aa12.56□□□□□ -0.4
UPK3BP1-201ENST00000428678 VSIG2Q96IQ7 327 aa12.56□□□□□ -0.4
UPK3BP1-201ENST00000428678 TRGV2A0A075B6R0 118 aa12.55□□□□□ -0.4
UPK3BP1-201ENST00000428678 H3BTX0 84 aa12.55□□□□□ -0.4
UPK3BP1-201ENST00000428678 SSSCA1O60232 199 aa12.55□□□□□ -0.4
UPK3BP1-201ENST00000428678 CCNKO75909 580 aa12.55□□□□□ -0.4
UPK3BP1-201ENST00000428678 AP3S2P59780 193 aa12.55□□□□□ -0.4
UPK3BP1-201ENST00000428678 SLC38A11Q08AI6 406 aa12.55□□□□□ -0.4
UPK3BP1-201ENST00000428678 DAZ2Q13117 558 aaKnown RBP12.55□□□□□ -0.4
UPK3BP1-201ENST00000428678 CDPF1Q6NVV7 123 aa12.55□□□□□ -0.4
UPK3BP1-201ENST00000428678 MCFD2Q8NI22 146 aa12.55□□□□□ -0.4
UPK3BP1-201ENST00000428678 SLC17A3O00476 420 aa12.54□□□□□ -0.4
UPK3BP1-201ENST00000428678 TNFSF8P32971 234 aa12.54□□□□□ -0.4
UPK3BP1-201ENST00000428678 LEPP41159 167 aa12.54□□□□□ -0.4
UPK3BP1-201ENST00000428678 ID3Q02535 119 aa12.54□□□□□ -0.4
UPK3BP1-201ENST00000428678 LINC00305Q7Z4B0 112 aa12.54□□□□□ -0.4
UPK3BP1-201ENST00000428678 BPIFA4PQ86YQ2 179 aa12.54□□□□□ -0.4
UPK3BP1-201ENST00000428678 TOMM5Q8N4H5 51 aa12.54□□□□□ -0.4
UPK3BP1-201ENST00000428678 SOSTQ9BQB4 213 aa12.54□□□□□ -0.4
UPK3BP1-201ENST00000428678 SLC25A21Q9BQT8 299 aaPredicted RBP12.54□□□□□ -0.4
UPK3BP1-201ENST00000428678 PYGO2Q9BRQ0 406 aa12.54□□□□□ -0.4
UPK3BP1-201ENST00000428678 NPVFQ9HCQ7 196 aa12.54□□□□□ -0.4
UPK3BP1-201ENST00000428678 MGAT4CQ9UBM8 478 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms