RNA–Protein interactions for RNA: ENST00000409470.5

USP39-203, Transcript of ubiquitin specific peptidase 39, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP39, Length 2,034 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-203ENST00000409470 RELQ04864 619 aaPredicted RBP16.04■□□□□ 0.16
USP39-203ENST00000409470 TMEM183AQ8IXX5 376 aa16.04■□□□□ 0.16
USP39-203ENST00000409470 LRRC75A-AS1Q8N1F1 130 aa16.04■□□□□ 0.16
USP39-203ENST00000409470 MBD6Q96DN6 1003 aa16.04■□□□□ 0.16
USP39-203ENST00000409470 USP9YO00507 2555 aaPredicted RBP16.04■□□□□ 0.16
USP39-203ENST00000409470 SNURFLB1AK76 121 aa16.04■□□□□ 0.16
USP39-203ENST00000409470 M0R3E3 92 aa16.04■□□□□ 0.16
USP39-203ENST00000409470 FRMD6-AS1P0C7T7 363 aa16.04■□□□□ 0.16
USP39-203ENST00000409470 DEFB112Q30KQ8 113 aa16.04■□□□□ 0.16
USP39-203ENST00000409470 TMEM75Q8N9X5 138 aa16.04■□□□□ 0.16
USP39-203ENST00000409470 MRPL18Q9H0U6 180 aaKnown RBP16.04■□□□□ 0.16
USP39-203ENST00000409470 IZUMO1RA6ND01 250 aa16.03■□□□□ 0.16
USP39-203ENST00000409470 DIRC3C9JPN6 131 aa16.03■□□□□ 0.16
USP39-203ENST00000409470 PRB4P10163 310 aaPredicted RBP16.03■□□□□ 0.16
USP39-203ENST00000409470 CSN1S1P47710 185 aa16.03■□□□□ 0.16
USP39-203ENST00000409470 DAZAP1Q96EP5 407 aaKnown RBP16.03■□□□□ 0.16
USP39-203ENST00000409470 TRBV6-1A0A0K0K1D8 114 aa16.02■□□□□ 0.16
USP39-203ENST00000409470 RAB9AP51151 201 aa16.02■□□□□ 0.16
USP39-203ENST00000409470 MRPL54Q6P161 138 aaKnown RBP16.02■□□□□ 0.16
USP39-203ENST00000409470 LINC00322Q6ZN03 302 aaPredicted RBP16.02■□□□□ 0.16
USP39-203ENST00000409470 ZNF492Q9P255 531 aa16.02■□□□□ 0.16
USP39-203ENST00000409470 SMAD5-AS1Q9Y6J3 95 aa16.02■□□□□ 0.16
USP39-203ENST00000409470 P01737 135 aa16.02■□□□□ 0.15
USP39-203ENST00000409470 IGHV4-31P0DP07 118 aa16.02■□□□□ 0.15
USP39-203ENST00000409470 COA6Q5JTJ3 125 aaKnown RBP16.02■□□□□ 0.15
USP39-203ENST00000409470 Q6ZS46 218 aa16.02■□□□□ 0.15
USP39-203ENST00000409470 CIARTQ8N365 385 aaPredicted RBP16.02■□□□□ 0.15
USP39-203ENST00000409470 ATP6V0BQ99437 205 aa16.02■□□□□ 0.15
USP39-203ENST00000409470 GNB1LQ9BYB4 327 aa16.02■□□□□ 0.15
USP39-203ENST00000409470 CSPG4Q6UVK1 2322 aa16.01■□□□□ 0.15
USP39-203ENST00000409470 FABP4P15090 132 aa16.01■□□□□ 0.15
USP39-203ENST00000409470 PPIFP30405 207 aaKnown RBP16.01■□□□□ 0.15
USP39-203ENST00000409470 PSG3Q16557 428 aa16.01■□□□□ 0.15
USP39-203ENST00000409470 WDR73Q6P4I2 378 aa16.01■□□□□ 0.15
USP39-203ENST00000409470 TSKUQ8WUA8 353 aa16.01■□□□□ 0.15
USP39-203ENST00000409470 RPP21Q9H633 154 aaKnown RBP16.01■□□□□ 0.15
USP39-203ENST00000409470 NAT8BQ9UHF3 227 aa16.01■□□□□ 0.15
USP39-203ENST00000409470 PSG8Q9UQ74 426 aa16.01■□□□□ 0.15
USP39-203ENST00000409470 ZNF785A8K8V0 405 aa16.01■□□□□ 0.15
USP39-203ENST00000409470 H3BUA1 57 aa16.01■□□□□ 0.15
USP39-203ENST00000409470 BUB3O43684 328 aa16.01■□□□□ 0.15
USP39-203ENST00000409470 IGHV4-59P01825 116 aa16.01■□□□□ 0.15
USP39-203ENST00000409470 RAB4BP61018 213 aa16.01■□□□□ 0.15
USP39-203ENST00000409470 COX19Q49B96 90 aa16.01■□□□□ 0.15
USP39-203ENST00000409470 OR10D4PQ8NGN7 298 aa16.01■□□□□ 0.15
USP39-203ENST00000409470 METTL26Q96S19 204 aa16.01■□□□□ 0.15
USP39-203ENST00000409470 CLPSL1A2RUU4 121 aa16■□□□□ 0.15
USP39-203ENST00000409470 C19orf71A6NCJ1 209 aa16■□□□□ 0.15
USP39-203ENST00000409470 PF4V1P10720 104 aa16■□□□□ 0.15
USP39-203ENST00000409470 ZFP30Q9Y2G7 519 aa16■□□□□ 0.15
USP39-203ENST00000409470 IGHV3-66A0A0C4DH42 116 aa15.99■□□□□ 0.15
USP39-203ENST00000409470 MT-ND6P03923 174 aa15.99■□□□□ 0.15
USP39-203ENST00000409470 ARL3P36405 182 aa15.99■□□□□ 0.15
USP39-203ENST00000409470 NUP35Q8NFH5 326 aa15.99■□□□□ 0.15
USP39-203ENST00000409470 NEU1Q99519 415 aa15.99■□□□□ 0.15
USP39-203ENST00000409470 ZNF331Q9NQX6 463 aaPredicted RBP15.99■□□□□ 0.15
USP39-203ENST00000409470 ABCA12Q86UK0 2595 aa15.99■□□□□ 0.15
USP39-203ENST00000409470 NAV2Q8IVL1 2488 aa15.99■□□□□ 0.15
USP39-203ENST00000409470 ZNF207O43670 478 aaKnown RBP15.99■□□□□ 0.15
USP39-203ENST00000409470 GBGT1Q8N5D6 347 aa15.99■□□□□ 0.15
USP39-203ENST00000409470 USMG5Q96IX5 58 aa15.99■□□□□ 0.15
USP39-203ENST00000409470 Q96MF0 132 aa15.99■□□□□ 0.15
USP39-203ENST00000409470 PRSS22Q9GZN4 317 aa15.99■□□□□ 0.15
USP39-203ENST00000409470 SERTM2A0A1B0GWG4 89 aa15.98■□□□□ 0.15
USP39-203ENST00000409470 PCP4L1A6NKN8 68 aa15.98■□□□□ 0.15
USP39-203ENST00000409470 HIGD1CA8MV81 97 aa15.98■□□□□ 0.15
USP39-203ENST00000409470 ZNF253O75346 499 aa15.98■□□□□ 0.15
USP39-203ENST00000409470 BRI3O95415 125 aa15.98■□□□□ 0.15
USP39-203ENST00000409470 TMEM136Q6ZRR5 245 aa15.98■□□□□ 0.15
USP39-203ENST00000409470 HIST1H2BLQ99880 126 aa15.98■□□□□ 0.15
USP39-203ENST00000409470 ASCL2Q99929 193 aa15.98■□□□□ 0.15
USP39-203ENST00000409470 IGHV3OR16-13A0A075B7E8 117 aa15.97■□□□□ 0.15
USP39-203ENST00000409470 IGHV3-74A0A0B4J1X5 117 aa15.97■□□□□ 0.15
USP39-203ENST00000409470 A8MWL6 223 aa15.97■□□□□ 0.15
USP39-203ENST00000409470 Q71RC1 249 aaPredicted RBP15.97■□□□□ 0.15
USP39-203ENST00000409470 IGHV3-49A0A0A0MS15 119 aa15.97■□□□□ 0.15
USP39-203ENST00000409470 CT83Q5H943 113 aa15.97■□□□□ 0.15
USP39-203ENST00000409470 IGFL4Q6B9Z1 124 aa15.97■□□□□ 0.15
USP39-203ENST00000409470 ZC2HC1AQ96GY0 325 aa15.97■□□□□ 0.15
USP39-203ENST00000409470 KLK15Q9H2R5 256 aa15.97■□□□□ 0.15
USP39-203ENST00000409470 IGHV3-11P01762 117 aa15.96■□□□□ 0.15
USP39-203ENST00000409470 APOHP02749 345 aaPredicted RBP15.96■□□□□ 0.15
USP39-203ENST00000409470 C1orf194Q5T5A4 169 aa15.96■□□□□ 0.15
USP39-203ENST00000409470 PACRGQ96M98 296 aaPredicted RBP15.96■□□□□ 0.15
USP39-203ENST00000409470 CR1P17927 2039 aa15.96■□□□□ 0.14
USP39-203ENST00000409470 A0A087X0K7 114 aa15.95■□□□□ 0.14
USP39-203ENST00000409470 GRIFINA4D1Z8 144 aa15.95■□□□□ 0.14
USP39-203ENST00000409470 TCF24Q7RTU0 167 aa15.95■□□□□ 0.14
USP39-203ENST00000409470 ARL6IP6Q8N6S5 226 aa15.95■□□□□ 0.14
USP39-203ENST00000409470 IGKV2-40A0A087WW87 121 aaPredicted RBP15.95■□□□□ 0.14
USP39-203ENST00000409470 CHEK1O14757 476 aa15.95■□□□□ 0.14
USP39-203ENST00000409470 IGKV2D-40P01614 121 aaPredicted RBP15.95■□□□□ 0.14
USP39-203ENST00000409470 TRBV12-3P01733 135 aa15.95■□□□□ 0.14
USP39-203ENST00000409470 HLA-DQA1P01909 254 aa15.95■□□□□ 0.14
USP39-203ENST00000409470 CRISP2P16562 243 aa15.95■□□□□ 0.14
USP39-203ENST00000409470 OR5R1Q8NH85 324 aa15.95■□□□□ 0.14
USP39-203ENST00000409470 HLA-DMBP28068 263 aa15.94■□□□□ 0.14
USP39-203ENST00000409470 RASL11AQ6T310 242 aa15.94■□□□□ 0.14
USP39-203ENST00000409470 OR4B1Q8NGF8 309 aa15.94■□□□□ 0.14
USP39-203ENST00000409470 NIT2Q9NQR4 276 aa15.94■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms