RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 G3V318 75 aa7.89□□□□□ -1.15
VPS53-202ENST00000389040 IGKV1-17P01599 117 aa7.89□□□□□ -1.15
VPS53-202ENST00000389040 S100A9P06702 114 aaKnown RBP7.89□□□□□ -1.15
VPS53-202ENST00000389040 FABP1P07148 127 aa7.89□□□□□ -1.15
VPS53-202ENST00000389040 GP9P14770 177 aa7.89□□□□□ -1.15
VPS53-202ENST00000389040 HIST1H1BP16401 226 aaKnown RBP7.89□□□□□ -1.15
VPS53-202ENST00000389040 MYCNOSP40205 109 aa7.89□□□□□ -1.15
VPS53-202ENST00000389040 RAB9AP51151 201 aa7.89□□□□□ -1.15
VPS53-202ENST00000389040 ERVFC1-1P60608 527 aa7.89□□□□□ -1.15
VPS53-202ENST00000389040 LYZP61626 148 aa7.89□□□□□ -1.15
VPS53-202ENST00000389040 ECSCRQ19T08 205 aa7.89□□□□□ -1.15
VPS53-202ENST00000389040 ACTL10Q5JWF8 245 aa7.89□□□□□ -1.15
VPS53-202ENST00000389040 ASPHD1Q5U4P2 390 aa7.89□□□□□ -1.15
VPS53-202ENST00000389040 LINC00527Q9UJ94 153 aa7.89□□□□□ -1.15
VPS53-202ENST00000389040 ZNF320A2RRD8 509 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 PEX7O00628 323 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 RD3LP0DJH9 198 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 CD28P10747 220 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 TAS2R60P59551 318 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 KRTAP10-3P60369 221 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 OR5I1Q13606 314 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 IL36BQ9NZH7 164 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 THYN1Q9P016 225 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 IGLV11-55A0A075B6I3 123 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 FAM223BA6NKX1 122 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 IFITM10A6NMD0 228 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 SLC17A3O00476 420 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 GCGP01275 180 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 IGLV2-8P01709 118 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 SNRPCP09234 159 aaKnown RBP7.88□□□□□ -1.15
VPS53-202ENST00000389040 CNN1P51911 297 aaKnown RBP7.88□□□□□ -1.15
VPS53-202ENST00000389040 RANP62826 216 aaKnown RBP7.88□□□□□ -1.15
VPS53-202ENST00000389040 TCTEX1D4Q5JR98 221 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 FAM223AQ8IWN6 122 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 OR4F17Q8NGA8 305 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 BLNKQ8WV28 456 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 FANCD2OSQ96PS1 177 aa7.88□□□□□ -1.15
VPS53-202ENST00000389040 CITED2Q99967 270 aaPredicted RBP7.88□□□□□ -1.15
VPS53-202ENST00000389040 TRAV9-1A0A075B6T8 112 aa7.87□□□□□ -1.15
VPS53-202ENST00000389040 TRBV9A0A0B4J1U6 114 aa7.87□□□□□ -1.15
VPS53-202ENST00000389040 TOMM40O96008 361 aa7.87□□□□□ -1.15
VPS53-202ENST00000389040 NBEAP1P0C6P0 100 aa7.87□□□□□ -1.15
VPS53-202ENST00000389040 PF4V1P10720 104 aa7.87□□□□□ -1.15
VPS53-202ENST00000389040 GFI1BQ5VTD9 330 aa7.87□□□□□ -1.15
VPS53-202ENST00000389040 LEMD1Q68G75 181 aa7.87□□□□□ -1.15
VPS53-202ENST00000389040 HIST3H2BBQ8N257 126 aa7.87□□□□□ -1.15
VPS53-202ENST00000389040 LINC00479Q96M42 142 aa7.87□□□□□ -1.15
VPS53-202ENST00000389040 SLC25A39Q9BZJ4 359 aaPredicted RBP7.87□□□□□ -1.15
VPS53-202ENST00000389040 V9GYV3 84 aa7.87□□□□□ -1.15
VPS53-202ENST00000389040 TRAV30A0A087WSZ9 112 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 ISLRO14498 428 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 MGST1P10620 155 aaKnown RBP7.86□□□□□ -1.15
VPS53-202ENST00000389040 S100A2P29034 98 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 RPEL1Q2QD12 228 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 ZNF600Q6ZNG1 722 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 ZNF491Q8N8L2 437 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 C4orf3Q8WVX3 66 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 ATP6V0BQ99437 205 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 RNASE7Q9H1E1 156 aaKnown RBP7.86□□□□□ -1.15
VPS53-202ENST00000389040 OSTCQ9NRP0 149 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 GAR1Q9NY12 217 aaKnown RBP7.86□□□□□ -1.15
VPS53-202ENST00000389040 MRPL27Q9P0M9 148 aaKnown RBP7.86□□□□□ -1.15
VPS53-202ENST00000389040 TMEM14CQ9P0S9 112 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 PGPA6NDG6 321 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 GNG7O60262 68 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 TRGV3P03979 118 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 SLC25A5P05141 298 aaKnown RBP7.86□□□□□ -1.15
VPS53-202ENST00000389040 MFAP4P55083 255 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 GNG5P63218 68 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 IBA57Q5T440 356 aaKnown RBP7.86□□□□□ -1.15
VPS53-202ENST00000389040 GPR61Q9BZJ8 451 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 EPDR1Q9UM22 224 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 TRAPPC1Q9Y5R8 145 aa7.86□□□□□ -1.15
VPS53-202ENST00000389040 XKRY2A2RUG3 117 aa7.85□□□□□ -1.15
VPS53-202ENST00000389040 RPLP1P05386 114 aaKnown RBP7.85□□□□□ -1.15
VPS53-202ENST00000389040 YPEL3P61236 119 aaPredicted RBP7.85□□□□□ -1.15
VPS53-202ENST00000389040 TMEM183BQ1AE95 376 aa7.85□□□□□ -1.15
VPS53-202ENST00000389040 PDZD11Q5EBL8 140 aa7.85□□□□□ -1.15
VPS53-202ENST00000389040 PRR31Q5SQ13 230 aa7.85□□□□□ -1.15
VPS53-202ENST00000389040 C10orf99Q6UWK7 81 aa7.85□□□□□ -1.15
VPS53-202ENST00000389040 C5orf17Q8NAS9 161 aa7.85□□□□□ -1.15
VPS53-202ENST00000389040 NHLRC2Q8NBF2 726 aa7.85□□□□□ -1.15
VPS53-202ENST00000389040 RNF125Q96EQ8 232 aa7.85□□□□□ -1.15
VPS53-202ENST00000389040 SHANK2-AS3Q9BTD1 123 aa7.85□□□□□ -1.15
VPS53-202ENST00000389040 KLK15Q9H2R5 256 aa7.85□□□□□ -1.15
VPS53-202ENST00000389040 S4R3C0 116 aa7.85□□□□□ -1.15
VPS53-202ENST00000389040 TRAV34A0A0B4J273 112 aa7.84□□□□□ -1.15
VPS53-202ENST00000389040 PCP4L1A6NKN8 68 aa7.84□□□□□ -1.15
VPS53-202ENST00000389040 ADARB2-AS1A8MUL3 147 aa7.84□□□□□ -1.15
VPS53-202ENST00000389040 H3BRN7 92 aa7.84□□□□□ -1.15
VPS53-202ENST00000389040 H3BTX0 84 aa7.84□□□□□ -1.15
VPS53-202ENST00000389040 IL4P05112 153 aa7.84□□□□□ -1.15
VPS53-202ENST00000389040 HIST1H1EP10412 219 aaKnown RBP7.84□□□□□ -1.15
VPS53-202ENST00000389040 TPPP2P59282 170 aa7.84□□□□□ -1.15
VPS53-202ENST00000389040 UBE2G1P62253 170 aa7.84□□□□□ -1.15
VPS53-202ENST00000389040 Q56UQ5 140 aa7.84□□□□□ -1.15
VPS53-202ENST00000389040 COA6Q5JTJ3 125 aaKnown RBP7.84□□□□□ -1.15
VPS53-202ENST00000389040 BAGE2Q86Y30 109 aa7.84□□□□□ -1.15
VPS53-202ENST00000389040 TMEM183AQ8IXX5 376 aa7.84□□□□□ -1.15
VPS53-202ENST00000389040 ATG101Q9BSB4 218 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 60.9 ms