RNA–Protein interactions for RNA: ENST00000377047.8

GPC6-201, Transcript of glypican 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC6, Length 6,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-201ENST00000377047 SHANK2-AS3Q9BTD1 123 aa10.99□□□□□ -0.65
GPC6-201ENST00000377047 DAD1P61803 113 aa10.98□□□□□ -0.65
GPC6-201ENST00000377047 VCYO14598 125 aa10.98□□□□□ -0.65
GPC6-201ENST00000377047 DKK1O94907 266 aa10.98□□□□□ -0.65
GPC6-201ENST00000377047 LOXP28300 417 aaPredicted RBP10.98□□□□□ -0.65
GPC6-201ENST00000377047 SRSF4Q08170 494 aaKnown RBP10.98□□□□□ -0.65
GPC6-201ENST00000377047 PHF3Q92576 2039 aaKnown RBP10.98□□□□□ -0.65
GPC6-201ENST00000377047 WISP1O95388 367 aa10.98□□□□□ -0.65
GPC6-201ENST00000377047 YLPM1P49750 1951 aaKnown RBP10.98□□□□□ -0.65
GPC6-201ENST00000377047 E9PQ18 207 aa10.98□□□□□ -0.65
GPC6-201ENST00000377047 ITGB1BP1O14713 200 aa10.98□□□□□ -0.65
GPC6-201ENST00000377047 CYTL1Q9NRR1 136 aa10.98□□□□□ -0.65
GPC6-201ENST00000377047 SPCS1Q9Y6A9 102 aa10.98□□□□□ -0.65
GPC6-201ENST00000377047 LINC01549A6NIU2 74 aa10.97□□□□□ -0.65
GPC6-201ENST00000377047 LINC00518Q8N0U6 118 aa10.97□□□□□ -0.65
GPC6-201ENST00000377047 DIDO1Q9BTC0 2240 aaKnown RBP10.97□□□□□ -0.65
GPC6-201ENST00000377047 SPINK13Q1W4C9 94 aa10.97□□□□□ -0.65
GPC6-201ENST00000377047 ZNF833PQ6ZTB9 187 aa10.97□□□□□ -0.65
GPC6-201ENST00000377047 TSC2P49815 1807 aa10.97□□□□□ -0.65
GPC6-201ENST00000377047 PLXNA4Q9HCM2 1894 aa10.97□□□□□ -0.65
GPC6-201ENST00000377047 PAX4O43316 350 aa10.97□□□□□ -0.65
GPC6-201ENST00000377047 C21orf62-AS1Q17RA5 79 aa10.97□□□□□ -0.65
GPC6-201ENST00000377047 C17orf58Q2M2W7 97 aa10.97□□□□□ -0.65
GPC6-201ENST00000377047 WDR86Q86TI4 376 aa10.97□□□□□ -0.65
GPC6-201ENST00000377047 RIF1Q5UIP0 2472 aaKnown RBP10.96□□□□□ -0.65
GPC6-201ENST00000377047 TRAV13-1A0A0B4J241 112 aa10.96□□□□□ -0.65
GPC6-201ENST00000377047 C6orf226Q5I0X4 101 aa10.96□□□□□ -0.65
GPC6-201ENST00000377047 Q6ZRM9 215 aa10.96□□□□□ -0.65
GPC6-201ENST00000377047 KNCNA6PVL3 124 aa10.96□□□□□ -0.65
GPC6-201ENST00000377047 RASL10AQ92737 203 aa10.96□□□□□ -0.65
GPC6-201ENST00000377047 K7EM74 188 aa10.96□□□□□ -0.65
GPC6-201ENST00000377047 ETV2O00321 342 aaPredicted RBP10.96□□□□□ -0.65
GPC6-201ENST00000377047 MST1LQ2TV78 715 aa10.96□□□□□ -0.66
GPC6-201ENST00000377047 IGKV1-6A0A0C4DH72 117 aa10.96□□□□□ -0.66
GPC6-201ENST00000377047 LMO1P25800 156 aa10.96□□□□□ -0.66
GPC6-201ENST00000377047 GRNP28799 593 aaKnown RBP10.96□□□□□ -0.66
GPC6-201ENST00000377047 SS18Q15532 418 aa10.96□□□□□ -0.66
GPC6-201ENST00000377047 TCTEX1D4Q5JR98 221 aa10.96□□□□□ -0.66
GPC6-201ENST00000377047 NUP35Q8NFH5 326 aa10.96□□□□□ -0.66
GPC6-201ENST00000377047 KLK9Q9UKQ9 250 aa10.96□□□□□ -0.66
GPC6-201ENST00000377047 FAM120AOSQ5T036 256 aa10.95□□□□□ -0.66
GPC6-201ENST00000377047 IGLV1-44P01699 117 aa10.95□□□□□ -0.66
GPC6-201ENST00000377047 LINC01551Q86U37 167 aa10.95□□□□□ -0.66
GPC6-201ENST00000377047 IGLV3-9A0A075B6K5 115 aa10.95□□□□□ -0.66
GPC6-201ENST00000377047 TRAV1-1A0A0B4J248 108 aa10.95□□□□□ -0.66
GPC6-201ENST00000377047 H3BUT2 72 aa10.95□□□□□ -0.66
GPC6-201ENST00000377047 TEX36Q5VZQ5 186 aa10.95□□□□□ -0.66
GPC6-201ENST00000377047 MCRIP2Q9BUT9 160 aaKnown RBP10.95□□□□□ -0.66
GPC6-201ENST00000377047 PTPRDP23468 1912 aa10.95□□□□□ -0.66
GPC6-201ENST00000377047 DMRTC2Q8IXT2 367 aaPredicted RBP10.95□□□□□ -0.66
GPC6-201ENST00000377047 GATD1Q8NB37 220 aa10.95□□□□□ -0.66
GPC6-201ENST00000377047 SMKR1H3BMG3 65 aa10.95□□□□□ -0.66
GPC6-201ENST00000377047 M0R2P5 195 aa10.94□□□□□ -0.66
GPC6-201ENST00000377047 WT1P19544 449 aaPredicted RBP10.94□□□□□ -0.66
GPC6-201ENST00000377047 APOC4P55056 127 aa10.94□□□□□ -0.66
GPC6-201ENST00000377047 TRAV9-2A0A087WT02 112 aa10.94□□□□□ -0.66
GPC6-201ENST00000377047 IGHV3-16A0A0C4DH30 117 aa10.94□□□□□ -0.66
GPC6-201ENST00000377047 AMBPP02760 352 aa10.94□□□□□ -0.66
GPC6-201ENST00000377047 Q86TA4 180 aa10.94□□□□□ -0.66
GPC6-201ENST00000377047 FNDC10F2Z333 226 aa10.94□□□□□ -0.66
GPC6-201ENST00000377047 ARTNQ5T4W7 220 aa10.94□□□□□ -0.66
GPC6-201ENST00000377047 OR2K2Q8NGT1 345 aa10.94□□□□□ -0.66
GPC6-201ENST00000377047 LRRK1Q38SD2 2015 aa10.94□□□□□ -0.66
GPC6-201ENST00000377047 SSBP2P81877 361 aaPredicted RBP10.94□□□□□ -0.66
GPC6-201ENST00000377047 MS4A6AQ9H2W1 248 aa10.94□□□□□ -0.66
GPC6-201ENST00000377047 NDUFA4L2Q9NRX3 87 aa10.94□□□□□ -0.66
GPC6-201ENST00000377047 SLC25A2Q9BXI2 301 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 TMEM14BQ9NUH8 114 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 A0A1B0GV90 55 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 GAGE12JA6NER3 117 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 GGTLC3B5MD39 225 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 GAGE1Q13065 139 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 GAGE4Q13068 117 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 GAGE5Q13069 117 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 GAGE13Q4V321 117 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 ARMS2P0C7Q2 107 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 C5orf30Q96GV9 206 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 NDUFS7O75251 213 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 DMRTA1Q5VZB9 504 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 A0A1B0GV72 72 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 TMEM238C9JI98 176 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 PDE6HQ13956 83 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 SMPXQ9UHP9 88 aa10.93□□□□□ -0.66
GPC6-201ENST00000377047 LINC00587B1AMM8 73 aa10.92□□□□□ -0.66
GPC6-201ENST00000377047 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP10.92□□□□□ -0.66
GPC6-201ENST00000377047 HIST1H2BKO60814 126 aa10.92□□□□□ -0.66
GPC6-201ENST00000377047 HIST1H2BJP06899 126 aa10.92□□□□□ -0.66
GPC6-201ENST00000377047 HIST1H2BOP23527 126 aa10.92□□□□□ -0.66
GPC6-201ENST00000377047 HIST1H2BBP33778 126 aa10.92□□□□□ -0.66
GPC6-201ENST00000377047 HIST1H2BDP58876 126 aa10.92□□□□□ -0.66
GPC6-201ENST00000377047 HIST1H2BCP62807 126 aa10.92□□□□□ -0.66
GPC6-201ENST00000377047 HIST2H2BEQ16778 126 aa10.92□□□□□ -0.66
GPC6-201ENST00000377047 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.92□□□□□ -0.66
GPC6-201ENST00000377047 HIST1H2BHQ93079 126 aa10.92□□□□□ -0.66
GPC6-201ENST00000377047 PLEKHB2Q96CS7 222 aa10.92□□□□□ -0.66
GPC6-201ENST00000377047 HIST1H2BNQ99877 126 aa10.92□□□□□ -0.66
GPC6-201ENST00000377047 HIST1H2BMQ99879 126 aa10.92□□□□□ -0.66
GPC6-201ENST00000377047 YPEL3P61236 119 aaPredicted RBP10.92□□□□□ -0.66
GPC6-201ENST00000377047 SEC11AP67812 179 aa10.92□□□□□ -0.66
GPC6-201ENST00000377047 SPOCK3Q9BQ16 436 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms