RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 IGHV3-30-3P0DP02 117 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 IGHV3-30-5P0DP03 117 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 FSTP19883 344 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 CXCL5P42830 114 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 ZNF134P52741 427 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 IFITM3Q01628 133 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 HGFACQ04756 655 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 SPCS2Q15005 226 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 MORN2Q502X0 79 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 RPL39P5Q59GN2 51 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 SUMO4Q6EEV6 95 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 LINC00518Q8N0U6 118 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 LY6G5BQ8NDX9 201 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 FAM131CQ96AQ9 280 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 ARFGEF2Q9Y6D5 1785 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 K7ERS5 55 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 FXYD7P58549 80 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 HIST2H2BCQ6DN03 193 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 ANAPC16Q96DE5 110 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 PSMG3-AS1Q96PY0 264 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 CHAC1Q9BUX1 264 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 KRTAP17-1Q9BYP8 105 aa3.26□□□□□ -1.89
USH2A-202ENST00000366942 COL24A1Q17RW2 1714 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 IGHV3OR16-8A0A075B7F1 116 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP3.25□□□□□ -1.89
USH2A-202ENST00000366942 J3QRE1 110 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 VSIG8P0DPA2 414 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 LRP11Q86VZ4 500 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 RIMKLAQ8IXN7 391 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 ZNF114Q8NC26 417 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 GAFA1Q96PS6 74 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 FAM110AQ9BQ89 295 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 IGLV3-9A0A075B6K5 115 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 TRBV5-7A0A0A0MS05 114 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 A0A0A6YYD4 124 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 M0R2P5 195 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 FABP2P12104 132 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 IER3P46695 156 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 YPEL3P61236 119 aaPredicted RBP3.25□□□□□ -1.89
USH2A-202ENST00000366942 NOP10Q9NPE3 64 aaKnown RBP3.25□□□□□ -1.89
USH2A-202ENST00000366942 LHFPL6Q9Y693 200 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 FREM1Q5H8C1 2179 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 CTSGP08311 255 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 CBLN1P23435 193 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 RPL28P46779 137 aaKnown RBP3.25□□□□□ -1.89
USH2A-202ENST00000366942 CD300EQ496F6 205 aaPredicted RBP3.25□□□□□ -1.89
USH2A-202ENST00000366942 TMEM61Q8N0U2 210 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 TAF1LQ8IZX4 1826 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 NDUFB6O95139 128 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 FUSP35637 526 aaKnown RBP eCLIP3.25□□□□□ -1.89
USH2A-202ENST00000366942 ALKAL2Q6UX46 152 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 TRAPPC1Q9Y5R8 145 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 TRIP11Q15643 1979 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 CENPVL1A0A0U1RR11 272 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 NPIPB5A8MRT5 1133 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 TRBV12-3P01733 135 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 PDE6HQ13956 83 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 FAM210AQ96ND0 272 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 MESP1Q9BRJ9 268 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 DUSP21Q9H596 190 aa3.25□□□□□ -1.89
USH2A-202ENST00000366942 NUP98P52948 1817 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 LEPROTO15243 131 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 NDUFS7O75251 213 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 IGHV4-38-2P0DP08 117 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 HIST1H3AP68431 136 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 GAGE6Q13070 117 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 SPINK13Q1W4C9 94 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 LYPD4Q6UWN0 246 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 WDR86Q86TI4 376 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 LINC01006Q8NI28 216 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 ATAD5Q96QE3 1844 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 TRAV13-1A0A0B4J241 112 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 TRBV5-5A0A0J9YX44 114 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 TCRBV5S1A1TA0A578 114 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 HMSDA8MTL9 139 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 CCL25O15444 150 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 ZFP2Q6ZN57 461 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 Q6ZSV7 163 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 PRIMA1Q86XR5 153 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 BAP18Q8IXM2 172 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 OR10AG1Q8NH19 301 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 ZNRF2Q8NHG8 242 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 TBX15Q96SF7 602 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 TRGV9Q99603 122 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 RNF126Q9BV68 326 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 AICDAQ9GZX7 198 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 PATJQ8NI35 1801 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 H0YL77 283 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 ZNF25P17030 456 aaPredicted RBP3.24□□□□□ -1.89
USH2A-202ENST00000366942 BATFQ16520 125 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 TEX36Q5VZQ5 186 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 MRPL13Q9BYD1 178 aaKnown RBP3.24□□□□□ -1.89
USH2A-202ENST00000366942 SMDT1Q9H4I9 107 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 MTFP1Q9UDX5 166 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 TP53BP1Q12888 1972 aaPredicted RBP3.24□□□□□ -1.89
USH2A-202ENST00000366942 IGLV1-36A0A0B4J1U3 117 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 IGKV2-24A0A0C4DH68 120 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 COX7A2LO14548 114 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 TCRBP04435 133 aa3.24□□□□□ -1.89
USH2A-202ENST00000366942 ZNF79Q15937 498 aa3.24□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms