RNA–Protein interactions for RNA: ENST00000348544.4

VPS39-202, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS39, Length 2,661 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-202ENST00000348544 E9PLD3 99 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 SLC25A17O43808 307 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 NPYP01303 97 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 TNFRSF1AP19438 455 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 IGFBP4P22692 258 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 PVRIGQ6DKI7 326 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 LYZL1Q6UWQ5 148 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 ORMDL3Q8N138 153 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 C9orf106Q8NAJ2 232 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 C1orf162Q8NEQ5 155 aaPredicted RBP5.37□□□□□ -1.55
VPS39-202ENST00000348544 OR10X1Q8NGY0 326 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 MAFAQ8NHW3 353 aaPredicted RBP5.37□□□□□ -1.55
VPS39-202ENST00000348544 ARPC1AQ92747 370 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 NHP2Q9NX24 153 aaKnown RBP5.37□□□□□ -1.55
VPS39-202ENST00000348544 HIGD1BQ9P298 99 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 ICE1Q9Y2F5 2266 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 CFAP47Q6ZTR5 3102 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 TMSB15BA0A087X1C1 80 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 CT45A10P0DMU9 189 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 CCL3L1P16619 93 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 INSL3P51460 131 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 LYZP61626 148 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 ETDBQ3ZM63 59 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 ZNF562Q6V9R5 426 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 MTURNQ8N3F0 131 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 TMEM75Q8N9X5 138 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 PIFOQ8TCI5 191 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 C8orf49Q96NF6 230 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 DKK4Q9UBT3 224 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 HIGD1AQ9Y241 93 aa5.37□□□□□ -1.55
VPS39-202ENST00000348544 CACNA1GO43497 2377 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 TRBV25-1A0A075B6N4 114 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 PRR33A8MZF0 331 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 IGLL5B9A064 214 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 H3BMG7 143 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 TM4SF5O14894 197 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 FCN3O75636 299 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 ATP5G2Q06055 141 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 ODF1Q14990 250 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 OR4C13Q8NGP0 309 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 SLC25A39Q9BZJ4 359 aaPredicted RBP5.36□□□□□ -1.55
VPS39-202ENST00000348544 ZMAT4Q9H898 229 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 PLSCR4Q9NRQ2 329 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 TMEM14CQ9P0S9 112 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 RNF7Q9UBF6 113 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 PSG8Q9UQ74 426 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 SMG1Q96Q15 3661 aaKnown RBP5.36□□□□□ -1.55
VPS39-202ENST00000348544 TRAV26-1A0A087WT03 109 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 F8W1H4 67 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 GAS8-AS1O95177 125 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 CKS1BP61024 79 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 ATP1A1-AS1Q5TC04 95 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 Q6AWC8 147 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 AMTNQ6UX39 209 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 SIGLEC15Q6ZMC9 328 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 TM2D2Q9BX73 214 aa5.36□□□□□ -1.55
VPS39-202ENST00000348544 INTS1Q8N201 2190 aaKnown RBP5.36□□□□□ -1.55
VPS39-202ENST00000348544 TRBV19A0A075B6N1 114 aa5.35□□□□□ -1.55
VPS39-202ENST00000348544 M0R3E3 92 aa5.35□□□□□ -1.55
VPS39-202ENST00000348544 GATA4P43694 442 aa5.35□□□□□ -1.55
VPS39-202ENST00000348544 TMEM30BQ3MIR4 351 aa5.35□□□□□ -1.55
VPS39-202ENST00000348544 TMEM164Q5U3C3 297 aa5.35□□□□□ -1.55
VPS39-202ENST00000348544 CEND1Q8N111 149 aa5.35□□□□□ -1.55
VPS39-202ENST00000348544 PRO0461Q9UI25 63 aa5.35□□□□□ -1.55
VPS39-202ENST00000348544 SLC25A15Q9Y619 301 aa5.35□□□□□ -1.55
VPS39-202ENST00000348544 LINC00312Q9Y6C7 94 aa5.35□□□□□ -1.55
VPS39-202ENST00000348544 PRRG2O14669 202 aa5.35□□□□□ -1.55
VPS39-202ENST00000348544 TCTEX1D4Q5JR98 221 aa5.35□□□□□ -1.55
VPS39-202ENST00000348544 TMEM133Q9H2Q1 129 aa5.35□□□□□ -1.55
VPS39-202ENST00000348544 IGHV3-72A0A0B4J1Y9 119 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 VSTM5A8MXK1 200 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 CNTFRP26992 372 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 CRYBA4P53673 196 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 SCGB2A2Q13296 93 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 GTSCR1Q86UQ5 136 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 MAPKAPK5-AS1Q8N8E1 139 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 ZNF479Q96JC4 524 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 NGBQ9NPG2 151 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 SIT1Q9Y3P8 196 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 PLCE1Q9P212 2302 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 NPIPB5A8MRT5 1133 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 SH2D1AO60880 128 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 IGHV1-46P01743 117 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 CKS2P33552 79 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 ZNF575Q86XF7 245 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 C20orf78Q9BR46 151 aa5.34□□□□□ -1.55
VPS39-202ENST00000348544 ASPMQ8IZT6 3477 aa5.34□□□□□ -1.56
VPS39-202ENST00000348544 IGLV3-9A0A075B6K5 115 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 SHISA9B4DS77 424 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 J3QR89 54 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 M0R1B8 84 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 MRPS12O15235 138 aaKnown RBP5.33□□□□□ -1.56
VPS39-202ENST00000348544 IGKV1-17P01599 117 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 WT1P19544 449 aaPredicted RBP5.33□□□□□ -1.56
VPS39-202ENST00000348544 EVI2AP22794 236 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 LEPP41159 167 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 TNFAIP6P98066 277 aaPredicted RBP5.33□□□□□ -1.56
VPS39-202ENST00000348544 C12orf74Q32Q52 190 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 VMA21Q3ZAQ7 101 aa5.33□□□□□ -1.56
VPS39-202ENST00000348544 TMEM200BQ69YZ2 307 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 106 ms