RNA–Protein interactions for RNA: ENST00000306324.3

HOXD4-201, Transcript of homeobox D4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD4, Length 1,464 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4-201ENST00000306324 RBMY1EA6NEQ0 496 aaKnown RBP16.54■□□□□ 0.24
HOXD4-201ENST00000306324 H3BQ15 152 aa16.54■□□□□ 0.24
HOXD4-201ENST00000306324 EIF3GO75821 320 aaKnown RBP eCLIP16.54■□□□□ 0.24
HOXD4-201ENST00000306324 RBMY1DP0C7P1 496 aaKnown RBP16.54■□□□□ 0.24
HOXD4-201ENST00000306324 LCN15Q6UWW0 184 aa16.54■□□□□ 0.24
HOXD4-201ENST00000306324 B9D2Q9BPU9 175 aa16.54■□□□□ 0.24
HOXD4-201ENST00000306324 OR7C2O60412 319 aa16.54■□□□□ 0.24
HOXD4-201ENST00000306324 TAS2R45P59539 299 aa16.54■□□□□ 0.24
HOXD4-201ENST00000306324 RNF182Q8N6D2 247 aa16.54■□□□□ 0.24
HOXD4-201ENST00000306324 ASCL2Q99929 193 aa16.54■□□□□ 0.24
HOXD4-201ENST00000306324 OR51M1Q9H341 326 aa16.54■□□□□ 0.24
HOXD4-201ENST00000306324 ZNF586Q9NXT0 402 aa16.54■□□□□ 0.24
HOXD4-201ENST00000306324 TRAV8-2A0A0B4J237 113 aa16.53■□□□□ 0.24
HOXD4-201ENST00000306324 KNCNA6PVL3 124 aa16.53■□□□□ 0.24
HOXD4-201ENST00000306324 SPP1P10451 314 aa16.53■□□□□ 0.24
HOXD4-201ENST00000306324 CDC34P49427 236 aaPredicted RBP16.53■□□□□ 0.24
HOXD4-201ENST00000306324 GUK1Q16774 197 aa16.53■□□□□ 0.24
HOXD4-201ENST00000306324 KHDC3LQ587J8 217 aa16.53■□□□□ 0.24
HOXD4-201ENST00000306324 TMEM41BQ5BJD5 291 aa16.53■□□□□ 0.24
HOXD4-201ENST00000306324 ACTL10Q5JWF8 245 aa16.53■□□□□ 0.24
HOXD4-201ENST00000306324 RPP25LQ8N5L8 163 aaKnown RBP16.53■□□□□ 0.24
HOXD4-201ENST00000306324 C20orf173Q96LM9 149 aa16.53■□□□□ 0.24
HOXD4-201ENST00000306324 PAXXQ9BUH6 204 aa16.53■□□□□ 0.24
HOXD4-201ENST00000306324 LOC102724200A0A096LPH7 203 aaPredicted RBP16.52■□□□□ 0.23
HOXD4-201ENST00000306324 SLC17A3O00476 420 aa16.52■□□□□ 0.23
HOXD4-201ENST00000306324 HMGB3O15347 200 aaKnown RBP16.52■□□□□ 0.23
HOXD4-201ENST00000306324 OR10J4P0C629 311 aa16.52■□□□□ 0.23
HOXD4-201ENST00000306324 HIST1H1EP10412 219 aaKnown RBP16.52■□□□□ 0.23
HOXD4-201ENST00000306324 RPL35AP18077 110 aaKnown RBP16.52■□□□□ 0.23
HOXD4-201ENST00000306324 EIF5AP63241 154 aaKnown RBP16.52■□□□□ 0.23
HOXD4-201ENST00000306324 AKR1C8PQ5T2L2 129 aa16.52■□□□□ 0.23
HOXD4-201ENST00000306324 STHQ8IWL8 128 aa16.52■□□□□ 0.23
HOXD4-201ENST00000306324 BLNKQ8WV28 456 aa16.52■□□□□ 0.23
HOXD4-201ENST00000306324 SLC50A1Q9BRV3 221 aa16.52■□□□□ 0.23
HOXD4-201ENST00000306324 RPRMQ9NS64 109 aa16.52■□□□□ 0.23
HOXD4-201ENST00000306324 DEFB1P60022 68 aa16.51■□□□□ 0.23
HOXD4-201ENST00000306324 LINC00322Q6ZN03 302 aaPredicted RBP16.51■□□□□ 0.23
HOXD4-201ENST00000306324 SBSPONQ8IVN8 264 aa16.51■□□□□ 0.23
HOXD4-201ENST00000306324 C9orf62Q8N4C0 152 aa16.51■□□□□ 0.23
HOXD4-201ENST00000306324 ZNF331Q9NQX6 463 aaPredicted RBP16.51■□□□□ 0.23
HOXD4-201ENST00000306324 TGP01266 2768 aa16.51■□□□□ 0.23
HOXD4-201ENST00000306324 COL7A1Q02388 2944 aa16.51■□□□□ 0.23
HOXD4-201ENST00000306324 TPT1P13693 172 aaKnown RBP16.5■□□□□ 0.23
HOXD4-201ENST00000306324 HLA-DMBP28068 263 aa16.5■□□□□ 0.23
HOXD4-201ENST00000306324 BAP18Q8IXM2 172 aa16.5■□□□□ 0.23
HOXD4-201ENST00000306324 RNF141Q8WVD5 230 aa16.5■□□□□ 0.23
HOXD4-201ENST00000306324 SAT2Q96F10 170 aaPredicted RBP16.5■□□□□ 0.23
HOXD4-201ENST00000306324 TRBV19A0A075B6N1 114 aa16.49■□□□□ 0.23
HOXD4-201ENST00000306324 NKX2-5P52952 324 aaPredicted RBP16.49■□□□□ 0.23
HOXD4-201ENST00000306324 UBE2L3P68036 154 aaKnown RBP16.49■□□□□ 0.23
HOXD4-201ENST00000306324 HAGHQ16775 308 aa16.49■□□□□ 0.23
HOXD4-201ENST00000306324 ZNF738Q8NE65 137 aa16.49■□□□□ 0.23
HOXD4-201ENST00000306324 RAB24Q969Q5 203 aa16.49■□□□□ 0.23
HOXD4-201ENST00000306324 FXYD5Q96DB9 178 aa16.49■□□□□ 0.23
HOXD4-201ENST00000306324 ZNF503Q96F45 646 aa16.49■□□□□ 0.23
HOXD4-201ENST00000306324 ACTR3CQ9C0K3 210 aaPredicted RBP16.49■□□□□ 0.23
HOXD4-201ENST00000306324 NBEAP1P0C6P0 100 aa16.48■□□□□ 0.23
HOXD4-201ENST00000306324 C4BPBP20851 252 aa16.48■□□□□ 0.23
HOXD4-201ENST00000306324 GDF5OSQ5U4N7 250 aa16.48■□□□□ 0.23
HOXD4-201ENST00000306324 NBEAL2Q6ZNJ1 2754 aa16.48■□□□□ 0.23
HOXD4-201ENST00000306324 F6UB75 175 aa16.48■□□□□ 0.23
HOXD4-201ENST00000306324 SEC11BP0C7V7 166 aa16.48■□□□□ 0.23
HOXD4-201ENST00000306324 PSG3Q16557 428 aa16.48■□□□□ 0.23
HOXD4-201ENST00000306324 PQLC2Q6ZP29 291 aa16.48■□□□□ 0.23
HOXD4-201ENST00000306324 STOML3Q8TAV4 291 aa16.48■□□□□ 0.23
HOXD4-201ENST00000306324 ZNF253O75346 499 aa16.47■□□□□ 0.23
HOXD4-201ENST00000306324 APOC4P55056 127 aa16.47■□□□□ 0.23
HOXD4-201ENST00000306324 PDE6HQ13956 83 aa16.47■□□□□ 0.23
HOXD4-201ENST00000306324 EBLN2Q6P2I7 272 aa16.47■□□□□ 0.23
HOXD4-201ENST00000306324 FOXI2Q6ZQN5 318 aa16.47■□□□□ 0.23
HOXD4-201ENST00000306324 TMED6Q8WW62 240 aa16.47■□□□□ 0.23
HOXD4-201ENST00000306324 SAV1Q9H4B6 383 aaPredicted RBP16.47■□□□□ 0.23
HOXD4-201ENST00000306324 NDUFB4O95168 129 aa16.46■□□□□ 0.23
HOXD4-201ENST00000306324 STAG3L2P0CL84 134 aa16.46■□□□□ 0.23
HOXD4-201ENST00000306324 STAG3L3P0CL85 134 aa16.46■□□□□ 0.23
HOXD4-201ENST00000306324 ARL14EPLP0DKL9 152 aa16.46■□□□□ 0.23
HOXD4-201ENST00000306324 PRB4P10163 310 aaPredicted RBP16.46■□□□□ 0.23
HOXD4-201ENST00000306324 PSG9Q00887 426 aa16.46■□□□□ 0.23
HOXD4-201ENST00000306324 SSX7Q7RTT5 188 aa16.46■□□□□ 0.23
HOXD4-201ENST00000306324 TRPT1Q86TN4 253 aaKnown RBP16.46■□□□□ 0.23
HOXD4-201ENST00000306324 SLC51BQ86UW2 128 aa16.46■□□□□ 0.23
HOXD4-201ENST00000306324 H3BMM0 161 aa16.45■□□□□ 0.22
HOXD4-201ENST00000306324 HLA-DRB4P13762 266 aa16.45■□□□□ 0.22
HOXD4-201ENST00000306324 HLA-DRB4X5D2U9 266 aa16.45■□□□□ 0.22
HOXD4-201ENST00000306324 CTXND1A0A1B0GTU2 59 aa16.44■□□□□ 0.22
HOXD4-201ENST00000306324 ZNF705FA8MVS1 300 aaPredicted RBP16.44■□□□□ 0.22
HOXD4-201ENST00000306324 IGKV3-20P01619 116 aa16.44■□□□□ 0.22
HOXD4-201ENST00000306324 ZNF726P1Q15940 193 aa16.44■□□□□ 0.22
HOXD4-201ENST00000306324 OR4B1Q8NGF8 309 aa16.44■□□□□ 0.22
HOXD4-201ENST00000306324 RPUSD4Q96CM3 377 aaKnown RBP16.44■□□□□ 0.22
HOXD4-201ENST00000306324 PHYHIPLQ96FC7 376 aa16.44■□□□□ 0.22
HOXD4-201ENST00000306324 AAMDCQ9H7C9 122 aa16.44■□□□□ 0.22
HOXD4-201ENST00000306324 CLEC5AQ9NY25 188 aa16.44■□□□□ 0.22
HOXD4-201ENST00000306324 KIR2DL5BA0A0G2JN68 375 aa16.43■□□□□ 0.22
HOXD4-201ENST00000306324 KIR2DL5BA0A0G2JPC4 375 aa16.43■□□□□ 0.22
HOXD4-201ENST00000306324 A0A0J9YX75 114 aa16.43■□□□□ 0.22
HOXD4-201ENST00000306324 ZNF705DP0CH99 300 aaPredicted RBP16.43■□□□□ 0.22
HOXD4-201ENST00000306324 ZNF705BP0CI00 300 aaPredicted RBP16.43■□□□□ 0.22
HOXD4-201ENST00000306324 KIR2DL5AQ8N109 375 aa16.43■□□□□ 0.22
HOXD4-201ENST00000306324 EXOC3-AS1Q8N2X6 119 aa16.43■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.8 ms