RNA–Protein interactions for RNA: ENST00000262803.9

UPF1-201, Transcript of UPF1, RNA helicase and ATPase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF1, Length 5,348 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-201ENST00000262803 C15orf62A8K5M9 175 aa15.55■□□□□ 0.08
UPF1-201ENST00000262803 YPEL3P61236 119 aaPredicted RBP15.55■□□□□ 0.08
UPF1-201ENST00000262803 C1orf194Q5T5A4 169 aa15.55■□□□□ 0.08
UPF1-201ENST00000262803 RMI2Q96E14 147 aa15.55■□□□□ 0.08
UPF1-201ENST00000262803 SHANK2-AS3Q9BTD1 123 aa15.55■□□□□ 0.08
UPF1-201ENST00000262803 IGKV1D-17A0A075B6S4 117 aa15.54■□□□□ 0.08
UPF1-201ENST00000262803 A6NNC1 897 aa15.54■□□□□ 0.08
UPF1-201ENST00000262803 SAA4P35542 130 aa15.54■□□□□ 0.08
UPF1-201ENST00000262803 TMEM95Q3KNT9 176 aa15.54■□□□□ 0.08
UPF1-201ENST00000262803 ZNF474Q6S9Z5 364 aaPredicted RBP15.54■□□□□ 0.08
UPF1-201ENST00000262803 BPESC1Q9GZL8 116 aa15.54■□□□□ 0.08
UPF1-201ENST00000262803 DIDO1Q9BTC0 2240 aaKnown RBP15.54■□□□□ 0.08
UPF1-201ENST00000262803 EVI2AP22794 236 aa15.54■□□□□ 0.08
UPF1-201ENST00000262803 TRPT1Q86TN4 253 aaKnown RBP15.54■□□□□ 0.08
UPF1-201ENST00000262803 IGHV4-39P01824 125 aa15.54■□□□□ 0.08
UPF1-201ENST00000262803 LYZL1Q6UWQ5 148 aa15.54■□□□□ 0.08
UPF1-201ENST00000262803 CACNA1BQ00975 2339 aa15.54■□□□□ 0.08
UPF1-201ENST00000262803 BRD3OSQ6XYD6 125 aa15.54■□□□□ 0.08
UPF1-201ENST00000262803 IL17RELQ6ZVW7 336 aa15.54■□□□□ 0.08
UPF1-201ENST00000262803 FANCMQ8IYD8 2048 aa15.53■□□□□ 0.08
UPF1-201ENST00000262803 Q5PR19 223 aa15.53■□□□□ 0.08
UPF1-201ENST00000262803 MRPL27Q9P0M9 148 aaKnown RBP15.53■□□□□ 0.08
UPF1-201ENST00000262803 TRAV12-3A0A0B4J271 114 aa15.53■□□□□ 0.08
UPF1-201ENST00000262803 IGHV1-69DA0A0B4J2H0 117 aa15.53■□□□□ 0.08
UPF1-201ENST00000262803 LEPROTO15243 131 aa15.53■□□□□ 0.08
UPF1-201ENST00000262803 IGHV1-69P01742 117 aa15.53■□□□□ 0.08
UPF1-201ENST00000262803 RPL35AP18077 110 aaKnown RBP15.53■□□□□ 0.08
UPF1-201ENST00000262803 TMEM256Q8N2U0 113 aa15.53■□□□□ 0.08
UPF1-201ENST00000262803 E7EQL1 145 aa15.53■□□□□ 0.08
UPF1-201ENST00000262803 PAX4O43316 350 aa15.53■□□□□ 0.08
UPF1-201ENST00000262803 FCN3O75636 299 aa15.53■□□□□ 0.08
UPF1-201ENST00000262803 APOC4P55056 127 aa15.53■□□□□ 0.08
UPF1-201ENST00000262803 C6orf226Q5I0X4 101 aa15.53■□□□□ 0.08
UPF1-201ENST00000262803 LY6G5BQ8NDX9 201 aa15.52■□□□□ 0.08
UPF1-201ENST00000262803 RNASE2P10153 161 aaKnown RBP15.52■□□□□ 0.08
UPF1-201ENST00000262803 HS3ST6Q96QI5 342 aa15.52■□□□□ 0.08
UPF1-201ENST00000262803 COL8A2P25067 703 aa15.52■□□□□ 0.07
UPF1-201ENST00000262803 ZNF479Q96JC4 524 aa15.52■□□□□ 0.07
UPF1-201ENST00000262803 DOCK8Q8NF50 2099 aa15.52■□□□□ 0.07
UPF1-201ENST00000262803 CD300EQ496F6 205 aaPredicted RBP15.52■□□□□ 0.07
UPF1-201ENST00000262803 D6R8Y8 96 aa15.51■□□□□ 0.07
UPF1-201ENST00000262803 J3QKU1 62 aa15.51■□□□□ 0.07
UPF1-201ENST00000262803 PKIGQ9Y2B9 76 aa15.51■□□□□ 0.07
UPF1-201ENST00000262803 PTPRDP23468 1912 aa15.51■□□□□ 0.07
UPF1-201ENST00000262803 EREGO14944 169 aa15.51■□□□□ 0.07
UPF1-201ENST00000262803 PYY3Q5JQD4 70 aa15.51■□□□□ 0.07
UPF1-201ENST00000262803 FAM231BA6NCW3 169 aa15.51■□□□□ 0.07
UPF1-201ENST00000262803 ETV2O00321 342 aaPredicted RBP15.51■□□□□ 0.07
UPF1-201ENST00000262803 PRR31Q5SQ13 230 aa15.5■□□□□ 0.07
UPF1-201ENST00000262803 CREBBPQ92793 2442 aa15.5■□□□□ 0.07
UPF1-201ENST00000262803 TMEM75Q8N9X5 138 aa15.5■□□□□ 0.07
UPF1-201ENST00000262803 THSD7BQ9C0I4 1608 aa15.5■□□□□ 0.07
UPF1-201ENST00000262803 MST1LQ2TV78 715 aa15.5■□□□□ 0.07
UPF1-201ENST00000262803 ZNF492Q9P255 531 aa15.5■□□□□ 0.07
UPF1-201ENST00000262803 ZNF407Q9C0G0 2248 aa15.5■□□□□ 0.07
UPF1-201ENST00000262803 IGHV2-70DA0A0C4DH43 119 aa15.5■□□□□ 0.07
UPF1-201ENST00000262803 IGKV1-6A0A0C4DH72 117 aa15.5■□□□□ 0.07
UPF1-201ENST00000262803 KLF17Q5JT82 389 aaPredicted RBP15.5■□□□□ 0.07
UPF1-201ENST00000262803 NEGR1Q7Z3B1 354 aa15.49■□□□□ 0.07
UPF1-201ENST00000262803 LINC00311Q8N616 119 aa15.49■□□□□ 0.07
UPF1-201ENST00000262803 FNDC4Q9H6D8 234 aaPredicted RBP15.49■□□□□ 0.07
UPF1-201ENST00000262803 FNDC1Q4ZHG4 1894 aaPredicted RBP15.49■□□□□ 0.07
UPF1-201ENST00000262803 LMO1P25800 156 aa15.49■□□□□ 0.07
UPF1-201ENST00000262803 SFTA2Q6UW10 78 aa15.49■□□□□ 0.07
UPF1-201ENST00000262803 LSM4Q9Y4Z0 139 aaKnown RBP15.49■□□□□ 0.07
UPF1-201ENST00000262803 KLF12Q9Y4X4 402 aa15.48■□□□□ 0.07
UPF1-201ENST00000262803 DOCK7Q96N67 2140 aa15.48■□□□□ 0.07
UPF1-201ENST00000262803 C9JQL5 133 aa15.48■□□□□ 0.07
UPF1-201ENST00000262803 SRSF2Q01130 221 aaKnown RBP15.48■□□□□ 0.07
UPF1-201ENST00000262803 CSTL1Q9H114 145 aa15.48■□□□□ 0.07
UPF1-201ENST00000262803 C1orf147Q96MC9 270 aaPredicted RBP15.48■□□□□ 0.07
UPF1-201ENST00000262803 NCR2O95944 276 aa15.48■□□□□ 0.07
UPF1-201ENST00000262803 H3BUA1 57 aa15.47■□□□□ 0.07
UPF1-201ENST00000262803 WISP1O95388 367 aa15.47■□□□□ 0.07
UPF1-201ENST00000262803 Q86TA4 180 aa15.47■□□□□ 0.07
UPF1-201ENST00000262803 NUP35Q8NFH5 326 aa15.47■□□□□ 0.07
UPF1-201ENST00000262803 TMEM141Q96I45 108 aa15.47■□□□□ 0.07
UPF1-201ENST00000262803 COL4A6Q14031 1691 aa15.47■□□□□ 0.07
UPF1-201ENST00000262803 MRPL52Q86TS9 123 aaKnown RBP15.47■□□□□ 0.07
UPF1-201ENST00000262803 CT83Q5H943 113 aa15.47■□□□□ 0.07
UPF1-201ENST00000262803 GATD1Q8NB37 220 aa15.47■□□□□ 0.07
UPF1-201ENST00000262803 OVOL3O00110 214 aa15.46■□□□□ 0.07
UPF1-201ENST00000262803 MLANAQ16655 118 aa15.46■□□□□ 0.07
UPF1-201ENST00000262803 ZNF329Q86UD4 541 aa15.46■□□□□ 0.07
UPF1-201ENST00000262803 LIME1Q9H400 295 aa15.46■□□□□ 0.07
UPF1-201ENST00000262803 HEATR5AQ86XA9 2040 aa15.46■□□□□ 0.07
UPF1-201ENST00000262803 RNF223E7ERA6 249 aa15.46■□□□□ 0.07
UPF1-201ENST00000262803 NDUFA4O00483 81 aa15.46■□□□□ 0.07
UPF1-201ENST00000262803 NOTCH3Q9UM47 2321 aa15.46■□□□□ 0.06
UPF1-201ENST00000262803 USF3Q68DE3 2245 aa15.46■□□□□ 0.06
UPF1-201ENST00000262803 IGKV1-16P04430 117 aa15.46■□□□□ 0.06
UPF1-201ENST00000262803 DAD1P61803 113 aa15.46■□□□□ 0.06
UPF1-201ENST00000262803 GAGE13Q4V321 117 aa15.46■□□□□ 0.06
UPF1-201ENST00000262803 TIMM21Q9BVV7 248 aa15.46■□□□□ 0.06
UPF1-201ENST00000262803 LAMTOR3Q9UHA4 124 aa15.45■□□□□ 0.06
UPF1-201ENST00000262803 TRAV8-1A0A0A6YYK1 113 aa15.45■□□□□ 0.06
UPF1-201ENST00000262803 LYPD2Q6UXB3 125 aa15.45■□□□□ 0.06
UPF1-201ENST00000262803 WFDC12Q8WWY7 111 aa15.45■□□□□ 0.06
UPF1-201ENST00000262803 DOCK10Q96BY6 2186 aa15.45■□□□□ 0.06
UPF1-201ENST00000262803 SYNJ2BPP57105 145 aa15.45■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms