RNA–Protein interactions for RNA: ENST00000219334.9

SMPD3-201, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMPD3, Length 5,453 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-201ENST00000219334 CSTL1Q9H114 145 aa15.31■□□□□ 0.04
SMPD3-201ENST00000219334 DICER1Q9UPY3 1922 aaKnown RBP15.31■□□□□ 0.04
SMPD3-201ENST00000219334 NDUFB8O95169 186 aa15.31■□□□□ 0.04
SMPD3-201ENST00000219334 PDE6HQ13956 83 aa15.31■□□□□ 0.04
SMPD3-201ENST00000219334 QRFPP83859 136 aa15.3■□□□□ 0.04
SMPD3-201ENST00000219334 SRSF3P84103 164 aaKnown RBP15.3■□□□□ 0.04
SMPD3-201ENST00000219334 C1orf122Q6ZSJ8 110 aa15.3■□□□□ 0.04
SMPD3-201ENST00000219334 DOCK10Q96BY6 2186 aa15.3■□□□□ 0.04
SMPD3-201ENST00000219334 DOCK8Q8NF50 2099 aa15.3■□□□□ 0.04
SMPD3-201ENST00000219334 ZNF581Q9P0T4 197 aa15.3■□□□□ 0.04
SMPD3-201ENST00000219334 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP15.3■□□□□ 0.04
SMPD3-201ENST00000219334 TRAV13-1A0A0B4J241 112 aa15.3■□□□□ 0.04
SMPD3-201ENST00000219334 APOC4P55056 127 aa15.3■□□□□ 0.04
SMPD3-201ENST00000219334 LINC00518Q8N0U6 118 aa15.3■□□□□ 0.04
SMPD3-201ENST00000219334 A0A087WWL8 130 aa15.3■□□□□ 0.04
SMPD3-201ENST00000219334 G3V318 75 aa15.3■□□□□ 0.04
SMPD3-201ENST00000219334 TRAV8-1A0A0A6YYK1 113 aa15.29■□□□□ 0.04
SMPD3-201ENST00000219334 F8WEM9 126 aa15.29■□□□□ 0.04
SMPD3-201ENST00000219334 MLANAQ16655 118 aa15.29■□□□□ 0.04
SMPD3-201ENST00000219334 ZNRD1Q9P1U0 126 aa15.29■□□□□ 0.04
SMPD3-201ENST00000219334 H3BUT2 72 aa15.29■□□□□ 0.04
SMPD3-201ENST00000219334 RASL11AQ6T310 242 aa15.28■□□□□ 0.04
SMPD3-201ENST00000219334 RHODO00212 210 aa15.28■□□□□ 0.04
SMPD3-201ENST00000219334 LMO1P25800 156 aa15.28■□□□□ 0.04
SMPD3-201ENST00000219334 GATD1Q8NB37 220 aa15.28■□□□□ 0.04
SMPD3-201ENST00000219334 LIME1Q9H400 295 aa15.28■□□□□ 0.04
SMPD3-201ENST00000219334 ETV2O00321 342 aaPredicted RBP15.28■□□□□ 0.04
SMPD3-201ENST00000219334 LOXP28300 417 aaPredicted RBP15.27■□□□□ 0.04
SMPD3-201ENST00000219334 YPEL3P61236 119 aaPredicted RBP15.27■□□□□ 0.04
SMPD3-201ENST00000219334 IL17RELQ6ZVW7 336 aa15.27■□□□□ 0.04
SMPD3-201ENST00000219334 LINC01551Q86U37 167 aa15.27■□□□□ 0.04
SMPD3-201ENST00000219334 TRAV8-2A0A0B4J237 113 aa15.27■□□□□ 0.03
SMPD3-201ENST00000219334 Q6ZR03 302 aa15.27■□□□□ 0.03
SMPD3-201ENST00000219334 MTURNQ8N3F0 131 aa15.27■□□□□ 0.03
SMPD3-201ENST00000219334 NCOR1P1Q9H4R4 102 aa15.27■□□□□ 0.03
SMPD3-201ENST00000219334 TMEM242Q9NWH2 141 aa15.27■□□□□ 0.03
SMPD3-201ENST00000219334 ERG28Q9UKR5 140 aa15.27■□□□□ 0.03
SMPD3-201ENST00000219334 TCTEX1D4Q5JR98 221 aa15.27■□□□□ 0.03
SMPD3-201ENST00000219334 MS4A6AQ9H2W1 248 aa15.27■□□□□ 0.03
SMPD3-201ENST00000219334 PROK2Q9HC23 129 aa15.27■□□□□ 0.03
SMPD3-201ENST00000219334 FAM215AQ9Y5M1 114 aa15.27■□□□□ 0.03
SMPD3-201ENST00000219334 DERL1Q9BUN8 251 aa15.27■□□□□ 0.03
SMPD3-201ENST00000219334 LAMTOR2Q9Y2Q5 125 aa15.27■□□□□ 0.03
SMPD3-201ENST00000219334 TCF20Q9UGU0 1960 aaKnown RBP15.26■□□□□ 0.03
SMPD3-201ENST00000219334 ATRAIDQ6UW56 229 aa15.26■□□□□ 0.03
SMPD3-201ENST00000219334 LY96Q9Y6Y9 160 aa15.26■□□□□ 0.03
SMPD3-201ENST00000219334 DKK1O94907 266 aa15.26■□□□□ 0.03
SMPD3-201ENST00000219334 ARMS2P0C7Q2 107 aa15.26■□□□□ 0.03
SMPD3-201ENST00000219334 ATXN8Q156A1 80 aa15.26■□□□□ 0.03
SMPD3-201ENST00000219334 SPINK13Q1W4C9 94 aa15.26■□□□□ 0.03
SMPD3-201ENST00000219334 LRRK1Q38SD2 2015 aa15.26■□□□□ 0.03
SMPD3-201ENST00000219334 TRAV16A0A0A6YYK6 109 aaPredicted RBP15.26■□□□□ 0.03
SMPD3-201ENST00000219334 NPC2P61916 151 aa15.25■□□□□ 0.03
SMPD3-201ENST00000219334 CLDN16Q9Y5I7 305 aa15.25■□□□□ 0.03
SMPD3-201ENST00000219334 SSBP2P81877 361 aaPredicted RBP15.25■□□□□ 0.03
SMPD3-201ENST00000219334 KIAA2026Q5HYC2 2103 aa15.24■□□□□ 0.03
SMPD3-201ENST00000219334 HS3ST6Q96QI5 342 aa15.24■□□□□ 0.03
SMPD3-201ENST00000219334 INS-IGF2F8WCM5 200 aa15.24■□□□□ 0.03
SMPD3-201ENST00000219334 DMRTA1Q5VZB9 504 aa15.24■□□□□ 0.03
SMPD3-201ENST00000219334 SPOCK3Q9BQ16 436 aa15.24■□□□□ 0.03
SMPD3-201ENST00000219334 COL4A6Q14031 1691 aa15.24■□□□□ 0.03
SMPD3-201ENST00000219334 A0A1B0GV90 55 aa15.24■□□□□ 0.03
SMPD3-201ENST00000219334 KNCNA6PVL3 124 aa15.24■□□□□ 0.03
SMPD3-201ENST00000219334 EREGO14944 169 aa15.24■□□□□ 0.03
SMPD3-201ENST00000219334 C21orf62-AS1Q17RA5 79 aa15.24■□□□□ 0.03
SMPD3-201ENST00000219334 TRPT1Q86TN4 253 aaKnown RBP15.24■□□□□ 0.03
SMPD3-201ENST00000219334 A0A0G2JRQ6 117 aa15.24■□□□□ 0.03
SMPD3-201ENST00000219334 CFHR3Q02985 330 aa15.24■□□□□ 0.03
SMPD3-201ENST00000219334 ZNF833PQ6ZTB9 187 aa15.24■□□□□ 0.03
SMPD3-201ENST00000219334 LY6G5BQ8NDX9 201 aa15.24■□□□□ 0.03
SMPD3-201ENST00000219334 NUP35Q8NFH5 326 aa15.24■□□□□ 0.03
SMPD3-201ENST00000219334 IGLV3-9A0A075B6K5 115 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 TRBV24-1A0A075B6N3 115 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 Q86TA4 180 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 CYTL1Q9NRR1 136 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 GAGE12JA6NER3 117 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 ZNF561-AS1K7EIQ3 104 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 GAGE1Q13065 139 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 GAGE4Q13068 117 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 GAGE5Q13069 117 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 GAGE13Q4V321 117 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 TEX36Q5VZQ5 186 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 ZMAT4Q9H898 229 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 NDUFA4O00483 81 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 ELANEP08246 267 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 ORAOV1Q8WV07 137 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 IGLV1-44P01699 117 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 MYMXA0A1B0GTQ4 84 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 C1orf194Q5T5A4 169 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 Q6ZRM9 215 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 LAMTOR3Q9UHA4 124 aa15.23■□□□□ 0.03
SMPD3-201ENST00000219334 HIST1H2BKO60814 126 aa15.22■□□□□ 0.03
SMPD3-201ENST00000219334 HIST1H2BJP06899 126 aa15.22■□□□□ 0.03
SMPD3-201ENST00000219334 HIST1H2BOP23527 126 aa15.22■□□□□ 0.03
SMPD3-201ENST00000219334 HIST1H2BBP33778 126 aa15.22■□□□□ 0.03
SMPD3-201ENST00000219334 HIST1H2BDP58876 126 aa15.22■□□□□ 0.03
SMPD3-201ENST00000219334 HIST1H2BCP62807 126 aa15.22■□□□□ 0.03
SMPD3-201ENST00000219334 HIST2H2BEQ16778 126 aa15.22■□□□□ 0.03
SMPD3-201ENST00000219334 HIST2H2BFQ5QNW6 126 aaPredicted RBP15.22■□□□□ 0.03
SMPD3-201ENST00000219334 PRIMA1Q86XR5 153 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms