RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 TOPBP1Q92547 1522 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 TPRP12270 2363 aaKnown RBP1.19□□□□□ -2.22
CD44-239ENST00000639002 PTPRSQ13332 1948 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 DENND4CQ5VZ89 1909 aa1.19□□□□□ -2.22
CD44-239ENST00000639002 CCDC88AQ3V6T2 1871 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 GVINP1Q7Z2Y8 2422 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 KDM5CP41229 1560 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 OVOS2A0A0J9YW53 1432 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 OVOS2Q6IE36 1432 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 KMT2CQ8NEZ4 4911 aaKnown RBP1.18□□□□□ -2.22
CD44-239ENST00000639002 IGKV1OR2-108A0A075B7D4 117 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 A0A096LPI6 279 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 IGKV1D-43A0A0B4J1Z2 117 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 IGHV1-58A0A0C4DH39 117 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 A0A1W2PQD3 144 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 F8W036 122 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 BUB1B-PAK6H3BSN5 160 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 GABARAPH6UMI1 98 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 TMEM256-PLSCR3K7ERE1 68 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 NDUFB3O43676 98 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 HIST1H2BKO60814 126 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 NAPSAO96009 420 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 C1QCP02747 245 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 HIST1H2BJP06899 126 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 TSPAN19P0C672 248 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 XCL1P47992 114 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 DYNLT3P51808 116 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 TMBIM6P55061 237 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 FOXA1P55317 472 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 SELENOWP63302 87 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 MRPS10P82664 201 aaKnown RBP1.18□□□□□ -2.22
CD44-239ENST00000639002 RHOGP84095 191 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 CHCHD2P9Q5T1J5 151 aaPredicted RBP1.18□□□□□ -2.22
CD44-239ENST00000639002 C22orf39Q6P5X5 142 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 HRCT1Q6UXD1 115 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 LINC00305Q7Z4B0 112 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 SLC35E3Q7Z769 313 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 LHFPL1Q86WI0 220 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 MSRB3Q8IXL7 192 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 SIGLECL1Q8N7X8 197 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 OR10P1Q8NGE3 313 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 TERB2Q8NHR7 220 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 FGF13Q92913 245 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 ARL11Q969Q4 196 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 MCEEQ96PE7 176 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 TP53RKQ96S44 253 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 PRADC1Q9BSG0 188 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 NPCDR1Q9BY65 106 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 TTTY13Q9BZ97 58 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 OR8D2Q9GZM6 311 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 TP73-AS1Q9UF72 201 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 EPDR1Q9UM22 224 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 ADAMTS7Q9UKP4 1686 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 MKI67P46013 3256 aaKnown RBP1.18□□□□□ -2.22
CD44-239ENST00000639002 MYH7P12883 1935 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 FAM135AQ9P2D6 1515 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 N4BP2Q86UW6 1770 aaPredicted RBP1.18□□□□□ -2.22
CD44-239ENST00000639002 RFX7Q2KHR2 1363 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 CACNA1SQ13698 1873 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 FER1L6Q2WGJ9 1857 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 NYNRINQ9P2P1 1898 aaKnown RBP1.18□□□□□ -2.22
CD44-239ENST00000639002 COL24A1Q17RW2 1714 aa1.18□□□□□ -2.22
CD44-239ENST00000639002 TRPM3Q9HCF6 1732 aaPredicted RBP1.18□□□□□ -2.22
CD44-239ENST00000639002 DOCK4Q8N1I0 1966 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 NBEAL1Q6ZS30 2694 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 NAIPQ13075 1403 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 RIC1Q4ADV7 1423 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 TRAPPC8Q9Y2L5 1435 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 DSCAMO60469 2012 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 TRGV5A0A0B4J1U4 118 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 TRAV13-1A0A0B4J241 112 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 A0A1B0GV90 55 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 H3BT86 120 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 SDCBPO00560 298 aaPredicted RBP1.17□□□□□ -2.22
CD44-239ENST00000639002 DLEU1O43261 78 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 SOD1P00441 154 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 IFNGP01579 166 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 MT-ND6P03923 174 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 CTSGP08311 255 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 HLA-EP13747 358 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 FKBP2P26885 142 aaKnown RBP1.17□□□□□ -2.22
CD44-239ENST00000639002 GUCA1AP43080 201 aaPredicted RBP1.17□□□□□ -2.22
CD44-239ENST00000639002 EVX1P49640 407 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 FXYD2P54710 66 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 DNAJB13P59910 316 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 COPZ1P61923 177 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 RRAS2P62070 204 aaPredicted RBP1.17□□□□□ -2.22
CD44-239ENST00000639002 HBBP68871 147 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 HIST1H1AQ02539 215 aaPredicted RBP1.17□□□□□ -2.22
CD44-239ENST00000639002 NEDD8Q15843 81 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 PABPC1L2AQ5JQF8 200 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 LYZL1Q6UWQ5 148 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 C2orf91Q6ZV80 131 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 AAED1Q7RTV5 226 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 LINC00471Q8N535 108 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 SLC30A7Q8NEW0 376 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 WFDC11Q8NEX6 87 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 OR4S1Q8NGB4 309 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 OR4E2Q8NGC2 313 aa1.17□□□□□ -2.22
CD44-239ENST00000639002 OR4B1Q8NGF8 309 aa1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms