RNA–Protein interactions for RNA: ENST00000637494.1

CLN6-221, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5 BASIC

Gene CLN6, Length 765 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-221ENST00000637494 H3BRN7 92 aa13.67□□□□□ -0.22
CLN6-221ENST00000637494 PLA2G10O15496 165 aa13.67□□□□□ -0.22
CLN6-221ENST00000637494 DUSP14O95147 198 aaKnown RBP13.67□□□□□ -0.22
CLN6-221ENST00000637494 LRRC20Q8TCA0 184 aa13.67□□□□□ -0.22
CLN6-221ENST00000637494 CCDC32Q9BV29 185 aa13.67□□□□□ -0.22
CLN6-221ENST00000637494 SCRT1Q9BWW7 348 aa13.67□□□□□ -0.22
CLN6-221ENST00000637494 RFNGQ9Y644 331 aa13.67□□□□□ -0.22
CLN6-221ENST00000637494 ALMS1Q8TCU4 4167 aa13.67□□□□□ -0.22
CLN6-221ENST00000637494 PLECQ15149 4684 aaKnown RBP13.66□□□□□ -0.22
CLN6-221ENST00000637494 TRAV6A0A075B6T7 132 aa13.66□□□□□ -0.22
CLN6-221ENST00000637494 TEX48A0A1B0GUV7 120 aa13.66□□□□□ -0.22
CLN6-221ENST00000637494 C5orf51A6NDU8 294 aa13.66□□□□□ -0.22
CLN6-221ENST00000637494 ZNF705FA8MVS1 300 aaPredicted RBP13.66□□□□□ -0.22
CLN6-221ENST00000637494 F6UB75 175 aa13.66□□□□□ -0.22
CLN6-221ENST00000637494 GOSR2O14653 212 aa13.66□□□□□ -0.22
CLN6-221ENST00000637494 ZNF705DP0CH99 300 aaPredicted RBP13.66□□□□□ -0.22
CLN6-221ENST00000637494 ZNF705BP0CI00 300 aaPredicted RBP13.66□□□□□ -0.22
CLN6-221ENST00000637494 SPART-AS1P0CW21 52 aa13.66□□□□□ -0.22
CLN6-221ENST00000637494 PLP1P60201 277 aa13.66□□□□□ -0.22
CLN6-221ENST00000637494 PXDC1Q5TGL8 231 aa13.66□□□□□ -0.22
CLN6-221ENST00000637494 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.66□□□□□ -0.22
CLN6-221ENST00000637494 SHANK2-AS3Q9BTD1 123 aa13.66□□□□□ -0.22
CLN6-221ENST00000637494 SLC35B3Q9H1N7 401 aa13.66□□□□□ -0.22
CLN6-221ENST00000637494 NUDT15Q9NV35 164 aa13.66□□□□□ -0.22
CLN6-221ENST00000637494 DEFB131BA0A096LNP1 70 aa13.65□□□□□ -0.22
CLN6-221ENST00000637494 CCNKO75909 580 aa13.65□□□□□ -0.22
CLN6-221ENST00000637494 HBE1P02100 147 aa13.65□□□□□ -0.22
CLN6-221ENST00000637494 MBPP02686 304 aaPredicted RBP13.65□□□□□ -0.22
CLN6-221ENST00000637494 AMBPP02760 352 aa13.65□□□□□ -0.22
CLN6-221ENST00000637494 BCAP31P51572 246 aa13.65□□□□□ -0.22
CLN6-221ENST00000637494 EMP1P54849 157 aa13.65□□□□□ -0.22
CLN6-221ENST00000637494 ZNF546Q86UE3 836 aa13.65□□□□□ -0.22
CLN6-221ENST00000637494 RPP25LQ8N5L8 163 aaKnown RBP13.65□□□□□ -0.22
CLN6-221ENST00000637494 ZNF709Q8N972 641 aa13.65□□□□□ -0.22
CLN6-221ENST00000637494 ZNF431Q8TF32 576 aaPredicted RBP13.65□□□□□ -0.22
CLN6-221ENST00000637494 TMEM208Q9BTX3 173 aa13.65□□□□□ -0.22
CLN6-221ENST00000637494 RNF126Q9BV68 326 aa13.65□□□□□ -0.22
CLN6-221ENST00000637494 GGACTQ9BVM4 153 aa13.65□□□□□ -0.22
CLN6-221ENST00000637494 ARL6Q9H0F7 186 aa13.65□□□□□ -0.22
CLN6-221ENST00000637494 APLNQ9ULZ1 77 aa13.65□□□□□ -0.22
CLN6-221ENST00000637494 CELA1Q9UNI1 258 aa13.65□□□□□ -0.22
CLN6-221ENST00000637494 RCL1Q9Y2P8 373 aaKnown RBP13.65□□□□□ -0.22
CLN6-221ENST00000637494 IGHV4-4A0A075B6R2 117 aa13.64□□□□□ -0.23
CLN6-221ENST00000637494 C7orf66A4D0T2 115 aa13.64□□□□□ -0.23
CLN6-221ENST00000637494 CCSO14618 274 aa13.64□□□□□ -0.23
CLN6-221ENST00000637494 DEDDO75618 318 aa13.64□□□□□ -0.23
CLN6-221ENST00000637494 PVALBP20472 110 aaPredicted RBP13.64□□□□□ -0.23
CLN6-221ENST00000637494 C12orf74Q32Q52 190 aa13.64□□□□□ -0.23
CLN6-221ENST00000637494 MZT2BQ6NZ67 158 aa13.64□□□□□ -0.23
CLN6-221ENST00000637494 GSG1LQ6UXU4 331 aa13.64□□□□□ -0.23
CLN6-221ENST00000637494 ZNF738Q8NE65 137 aa13.64□□□□□ -0.23
CLN6-221ENST00000637494 C20orf173Q96LM9 149 aa13.64□□□□□ -0.23
CLN6-221ENST00000637494 LSM5Q9Y4Y9 91 aaKnown RBP13.64□□□□□ -0.23
CLN6-221ENST00000637494 FAM240BA0A1B0GVZ2 78 aa13.63□□□□□ -0.23
CLN6-221ENST00000637494 K7EPK0 472 aa13.63□□□□□ -0.23
CLN6-221ENST00000637494 H2AFB2P0C5Z0 115 aa13.63□□□□□ -0.23
CLN6-221ENST00000637494 SLC38A11Q08AI6 406 aa13.63□□□□□ -0.23
CLN6-221ENST00000637494 RAB31Q13636 194 aa13.63□□□□□ -0.23
CLN6-221ENST00000637494 ZNF767PQ75MW2 155 aa13.63□□□□□ -0.23
CLN6-221ENST00000637494 C12orf45Q8N5I9 185 aaPredicted RBP13.63□□□□□ -0.23
CLN6-221ENST00000637494 S100ZQ8WXG8 99 aa13.63□□□□□ -0.23
CLN6-221ENST00000637494 UHRF2Q96PU4 802 aa13.63□□□□□ -0.23
CLN6-221ENST00000637494 ARV1Q9H2C2 271 aa13.63□□□□□ -0.23
CLN6-221ENST00000637494 CAV2P51636 162 aa13.62□□□□□ -0.23
CLN6-221ENST00000637494 RRN3P1Q2M238 152 aa13.62□□□□□ -0.23
CLN6-221ENST00000637494 LINC00299Q6ZSB3 139 aa13.62□□□□□ -0.23
CLN6-221ENST00000637494 SEC22CQ9BRL7 303 aa13.62□□□□□ -0.23
CLN6-221ENST00000637494 PPP1R14DQ9NXH3 145 aa13.62□□□□□ -0.23
CLN6-221ENST00000637494 HYDINQ4G0P3 5121 aa13.62□□□□□ -0.23
CLN6-221ENST00000637494 AGPAT2O15120 278 aa13.61□□□□□ -0.23
CLN6-221ENST00000637494 CNN1P51911 297 aaKnown RBP13.61□□□□□ -0.23
CLN6-221ENST00000637494 RNF182Q8N6D2 247 aa13.61□□□□□ -0.23
CLN6-221ENST00000637494 C2orf50Q96LR7 162 aa13.61□□□□□ -0.23
CLN6-221ENST00000637494 IGF2BP2-AS1Q96M15 143 aa13.61□□□□□ -0.23
CLN6-221ENST00000637494 NDUFAF3Q9BU61 184 aa13.61□□□□□ -0.23
CLN6-221ENST00000637494 A0A087X0K7 114 aa13.6□□□□□ -0.23
CLN6-221ENST00000637494 LOC102723971A0A1B0GUV8 181 aa13.6□□□□□ -0.23
CLN6-221ENST00000637494 A8MTW9 85 aa13.6□□□□□ -0.23
CLN6-221ENST00000637494 COX7A2P2O60397 106 aa13.6□□□□□ -0.23
CLN6-221ENST00000637494 INSP01308 110 aa13.6□□□□□ -0.23
CLN6-221ENST00000637494 IGFL4Q6B9Z1 124 aa13.6□□□□□ -0.23
CLN6-221ENST00000637494 C17orf77Q96MU5 243 aa13.6□□□□□ -0.23
CLN6-221ENST00000637494 TRAV8-2A0A0B4J237 113 aa13.59□□□□□ -0.23
CLN6-221ENST00000637494 S100A10P60903 97 aa13.59□□□□□ -0.23
CLN6-221ENST00000637494 B2MP61769 119 aa13.59□□□□□ -0.23
CLN6-221ENST00000637494 RHOBP62745 196 aa13.59□□□□□ -0.23
CLN6-221ENST00000637494 ARL16Q0P5N6 197 aa13.59□□□□□ -0.23
CLN6-221ENST00000637494 Q6ZRG5 221 aa13.59□□□□□ -0.23
CLN6-221ENST00000637494 LINC00305Q7Z4B0 112 aa13.59□□□□□ -0.23
CLN6-221ENST00000637494 C1orf158Q8N1D5 194 aa13.59□□□□□ -0.23
CLN6-221ENST00000637494 NIPSNAP3BQ9BS92 247 aa13.59□□□□□ -0.23
CLN6-221ENST00000637494 CXCL2P19875 107 aa13.58□□□□□ -0.24
CLN6-221ENST00000637494 CAMLGP49069 296 aa13.58□□□□□ -0.24
CLN6-221ENST00000637494 HIST1H1AQ02539 215 aaPredicted RBP13.58□□□□□ -0.24
CLN6-221ENST00000637494 PSG3Q16557 428 aa13.58□□□□□ -0.24
CLN6-221ENST00000637494 SPINK13Q1W4C9 94 aa13.58□□□□□ -0.24
CLN6-221ENST00000637494 FAM222AQ5U5X8 452 aa13.58□□□□□ -0.24
CLN6-221ENST00000637494 C10orf113Q5VZT2 155 aa13.58□□□□□ -0.24
CLN6-221ENST00000637494 LCN15Q6UWW0 184 aa13.58□□□□□ -0.24
CLN6-221ENST00000637494 AMTNQ6UX39 209 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 45.4 ms