RNA–Protein interactions for RNA: ENST00000637100.1

CLN3-255, Transcript of CLN3, battenin, human

TSL 5 BASIC

Gene CLN3, Length 1,284 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-255	ENST00000637100	GPR141	Q7Z602	305 aa		11.48	□□□□□ -0.57
CLN3-255	ENST00000637100	PPP1R14B	Q96C90	147 aa		11.48	□□□□□ -0.57
CLN3-255	ENST00000637100	TMEM208	Q9BTX3	173 aa		11.48	□□□□□ -0.57
CLN3-255	ENST00000637100		M0R2Z0	102 aa		11.47	□□□□□ -0.57
CLN3-255	ENST00000637100	IL18	Q14116	193 aa		11.47	□□□□□ -0.57
CLN3-255	ENST00000637100	SPINK13	Q1W4C9	94 aa		11.47	□□□□□ -0.57
CLN3-255	ENST00000637100	TMEM128	Q5BJH2	165 aa		11.47	□□□□□ -0.57
CLN3-255	ENST00000637100		Q8N1X5	172 aa		11.47	□□□□□ -0.57
CLN3-255	ENST00000637100	DIRAS2	Q96HU8	199 aa		11.47	□□□□□ -0.57
CLN3-255	ENST00000637100	CIB3	Q96Q77	187 aa	Predicted RBP	11.47	□□□□□ -0.57
CLN3-255	ENST00000637100	ATG101	Q9BSB4	218 aa		11.47	□□□□□ -0.57
CLN3-255	ENST00000637100	LINC00588	Q9Y4M8	146 aa		11.47	□□□□□ -0.57
CLN3-255	ENST00000637100		H3BRN7	92 aa		11.46	□□□□□ -0.57
CLN3-255	ENST00000637100	ATP5G1	P05496	136 aa		11.46	□□□□□ -0.57
CLN3-255	ENST00000637100	ATP5G3	P48201	142 aa		11.46	□□□□□ -0.57
CLN3-255	ENST00000637100	PLP1	P60201	277 aa		11.46	□□□□□ -0.57
CLN3-255	ENST00000637100	TMEM256	Q8N2U0	113 aa		11.46	□□□□□ -0.57
CLN3-255	ENST00000637100	BPIFC	Q8NFQ6	507 aa		11.46	□□□□□ -0.57
CLN3-255	ENST00000637100	DYNC2LI1	Q8TCX1	351 aa		11.46	□□□□□ -0.57
CLN3-255	ENST00000637100	RSL24D1	Q9UHA3	163 aa	Known RBP	11.46	□□□□□ -0.57
CLN3-255	ENST00000637100	BOLA2-SMG1P6	H3BVE0	249 aa		11.45	□□□□□ -0.58
CLN3-255	ENST00000637100	SYNGR2	O43760	224 aa		11.45	□□□□□ -0.58
CLN3-255	ENST00000637100	MED6	O75586	246 aa		11.45	□□□□□ -0.58
CLN3-255	ENST00000637100	DEFB130B	P0DP73	79 aa		11.45	□□□□□ -0.58
CLN3-255	ENST00000637100	DEFB130A	P0DP74	79 aa		11.45	□□□□□ -0.58
CLN3-255	ENST00000637100	IAPP	P10997	89 aa		11.45	□□□□□ -0.58
CLN3-255	ENST00000637100	GATA2	P23769	480 aa	Predicted RBP	11.45	□□□□□ -0.58
CLN3-255	ENST00000637100	S100A7	P31151	101 aa		11.45	□□□□□ -0.58
CLN3-255	ENST00000637100	C4orf46	Q504U0	113 aa		11.45	□□□□□ -0.58
CLN3-255	ENST00000637100	LINC00612	Q8N6U2	182 aa		11.45	□□□□□ -0.58
CLN3-255	ENST00000637100	MAPKAPK5-AS1	Q8N8E1	139 aa		11.45	□□□□□ -0.58
CLN3-255	ENST00000637100	SLC25A22	Q9H936	323 aa		11.45	□□□□□ -0.58
CLN3-255	ENST00000637100	CCDC59	Q9P031	241 aa	Known RBP	11.45	□□□□□ -0.58
CLN3-255	ENST00000637100		A0A087X0K7	114 aa		11.44	□□□□□ -0.58
CLN3-255	ENST00000637100	CXCL3	P19876	107 aa		11.44	□□□□□ -0.58
CLN3-255	ENST00000637100	CCL18	P55774	89 aa		11.44	□□□□□ -0.58
CLN3-255	ENST00000637100	TAS2R60	P59551	318 aa		11.44	□□□□□ -0.58
CLN3-255	ENST00000637100	RPP30	P78346	268 aa	Known RBP	11.44	□□□□□ -0.58
CLN3-255	ENST00000637100	TMEM144	Q7Z5S9	345 aa		11.44	□□□□□ -0.58
CLN3-255	ENST00000637100	BAP18	Q8IXM2	172 aa		11.44	□□□□□ -0.58
CLN3-255	ENST00000637100	RNF141	Q8WVD5	230 aa		11.44	□□□□□ -0.58
CLN3-255	ENST00000637100	ZNF503	Q96F45	646 aa		11.44	□□□□□ -0.58
CLN3-255	ENST00000637100	SHANK2-AS3	Q9BTD1	123 aa		11.44	□□□□□ -0.58
CLN3-255	ENST00000637100	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	11.44	□□□□□ -0.58
CLN3-255	ENST00000637100		F5H768	121 aa		11.43	□□□□□ -0.58
CLN3-255	ENST00000637100	ORM2	P19652	201 aa		11.43	□□□□□ -0.58
CLN3-255	ENST00000637100	BTF3	P20290	206 aa	Known RBP	11.43	□□□□□ -0.58
CLN3-255	ENST00000637100	FCN2	Q15485	313 aa		11.43	□□□□□ -0.58
CLN3-255	ENST00000637100	IGFL4	Q6B9Z1	124 aa		11.43	□□□□□ -0.58
CLN3-255	ENST00000637100	ZNF493	Q6ZR52	646 aa		11.43	□□□□□ -0.58
CLN3-255	ENST00000637100	ACOT7L	Q6ZUV0	252 aa		11.43	□□□□□ -0.58
CLN3-255	ENST00000637100	RNF182	Q8N6D2	247 aa		11.43	□□□□□ -0.58
CLN3-255	ENST00000637100	OR8A1	Q8NGG7	326 aa		11.43	□□□□□ -0.58
CLN3-255	ENST00000637100	TMEM147	Q9BVK8	224 aa		11.43	□□□□□ -0.58
CLN3-255	ENST00000637100	PMS2P5	A8MQ11	134 aa		11.42	□□□□□ -0.58
CLN3-255	ENST00000637100	MRPS12	O15235	138 aa	Known RBP	11.42	□□□□□ -0.58
CLN3-255	ENST00000637100	RPL7	P18124	248 aa	Known RBP	11.42	□□□□□ -0.58
CLN3-255	ENST00000637100	RNASE8	Q8TDE3	154 aa	Known RBP	11.42	□□□□□ -0.58
CLN3-255	ENST00000637100	C16orf74	Q96GX8	76 aa		11.42	□□□□□ -0.58
CLN3-255	ENST00000637100	BCL7B	Q9BQE9	202 aa		11.42	□□□□□ -0.58
CLN3-255	ENST00000637100	UPK3B	Q9BT76	320 aa		11.42	□□□□□ -0.58
CLN3-255	ENST00000637100	KRTAP1-5	Q9BYS1	174 aa		11.42	□□□□□ -0.58
CLN3-255	ENST00000637100	SLIRP	Q9GZT3	109 aa	Known RBP	11.42	□□□□□ -0.58
CLN3-255	ENST00000637100	MCUB	Q9NWR8	336 aa		11.42	□□□□□ -0.58
CLN3-255	ENST00000637100	TIMM8B	Q9Y5J9	83 aa	Predicted RBP	11.42	□□□□□ -0.58
CLN3-255	ENST00000637100	TRAV12-2	A0A075B6T6	113 aa		11.41	□□□□□ -0.58
CLN3-255	ENST00000637100		K7EPK0	472 aa		11.41	□□□□□ -0.58
CLN3-255	ENST00000637100	NUDT3	O95989	172 aa		11.41	□□□□□ -0.58
CLN3-255	ENST00000637100	TNFSF8	P32971	234 aa		11.41	□□□□□ -0.58
CLN3-255	ENST00000637100	ID3	Q02535	119 aa		11.41	□□□□□ -0.58
CLN3-255	ENST00000637100	PSG3	Q16557	428 aa		11.41	□□□□□ -0.58
CLN3-255	ENST00000637100	DEDD2	Q8WXF8	326 aa		11.41	□□□□□ -0.58
CLN3-255	ENST00000637100	TRIM63	Q969Q1	353 aa		11.41	□□□□□ -0.58
CLN3-255	ENST00000637100	C20orf144	Q9BQM9	153 aa		11.41	□□□□□ -0.58
CLN3-255	ENST00000637100		Q9H3A6	140 aa		11.41	□□□□□ -0.58
CLN3-255	ENST00000637100		Q9H8V8	135 aa		11.41	□□□□□ -0.58
CLN3-255	ENST00000637100		A0A1W2PPQ1	181 aa		11.4	□□□□□ -0.58
CLN3-255	ENST00000637100		H3BNG1	76 aa		11.4	□□□□□ -0.58
CLN3-255	ENST00000637100	WRB	O00258	174 aa		11.4	□□□□□ -0.58
CLN3-255	ENST00000637100	SELENOT	P62341	195 aa		11.4	□□□□□ -0.58
CLN3-255	ENST00000637100	CYP2G1P	Q6ZSU1	146 aa		11.4	□□□□□ -0.58
CLN3-255	ENST00000637100	SSX7	Q7RTT5	188 aa		11.4	□□□□□ -0.58
CLN3-255	ENST00000637100	ZNF738	Q8NE65	137 aa		11.4	□□□□□ -0.58
CLN3-255	ENST00000637100	RAB2B	Q8WUD1	216 aa		11.4	□□□□□ -0.58
CLN3-255	ENST00000637100	TMEM263	Q8WUH6	116 aa	Known RBP	11.4	□□□□□ -0.58
CLN3-255	ENST00000637100	LINC01587	Q99440	93 aa		11.4	□□□□□ -0.58
CLN3-255	ENST00000637100	SLC25A21	Q9BQT8	299 aa	Predicted RBP	11.4	□□□□□ -0.58
CLN3-255	ENST00000637100	FABP12	A6NFH5	140 aa		11.39	□□□□□ -0.59
CLN3-255	ENST00000637100	FNDC10	F2Z333	226 aa		11.39	□□□□□ -0.59
CLN3-255	ENST00000637100	SFT2D2	O95562	160 aa		11.39	□□□□□ -0.59
CLN3-255	ENST00000637100	CDKN1B	P46527	198 aa		11.39	□□□□□ -0.59
CLN3-255	ENST00000637100	TMBIM6	P55061	237 aa		11.39	□□□□□ -0.59
CLN3-255	ENST00000637100	RXFP4	Q8TDU9	374 aa		11.39	□□□□□ -0.59
CLN3-255	ENST00000637100	MRPS26	Q9BYN8	205 aa	Known RBP	11.39	□□□□□ -0.59
CLN3-255	ENST00000637100	HIGD1A	Q9Y241	93 aa		11.39	□□□□□ -0.59
CLN3-255	ENST00000637100	STRAP	Q9Y3F4	350 aa	Known RBP	11.39	□□□□□ -0.59
CLN3-255	ENST00000637100		H7BYZ3	331 aa		11.38	□□□□□ -0.59
CLN3-255	ENST00000637100	HYPM	O75409	117 aa		11.38	□□□□□ -0.59
CLN3-255	ENST00000637100	CXCL2	P19875	107 aa		11.38	□□□□□ -0.59
CLN3-255	ENST00000637100	FAU	P35544	74 aa	Known RBP	11.38	□□□□□ -0.59

Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms