RNA–Protein interactions for RNA: ENST00000635750.1

SCN1A-209, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,299 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-209ENST00000635750 TMEM178BH3BS89 294 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 IGHV1-8P0DP01 117 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 SLC25A48Q6ZT89 311 aaKnown RBP4.58□□□□□ -1.68
SCN1A-209ENST00000635750 SPRR3Q9UBC9 169 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 MSRB2Q9Y3D2 182 aa4.58□□□□□ -1.68
SCN1A-209ENST00000635750 HELZP42694 1942 aaKnown RBP4.57□□□□□ -1.68
SCN1A-209ENST00000635750 MLNRO43193 412 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 ZNF250P15622 560 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 PRTN3P24158 256 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 ADMP35318 185 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 TRGV9Q99603 122 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 BRWD3Q6RI45 1802 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 NOTCH3Q9UM47 2321 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 RAMP3O60896 148 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 SYNJ2BPP57105 145 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 ZCCHC24Q8N2G6 241 aaKnown RBP4.57□□□□□ -1.68
SCN1A-209ENST00000635750 TMEM105Q8N8V8 129 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 SPANXA1Q9NS26 97 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 NCOR1O75376 2440 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 MED12Q93074 2177 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 MSMBP08118 114 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 PYYP10082 97 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 FAM219BQ5XKK7 198 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 TMEM243Q9BU79 118 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 LIME1Q9H400 295 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 RFNGQ9Y644 331 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 LY75O60449 1722 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 TRAV5A0A0B4J249 113 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 MBD3L4A6NDZ8 208 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-209ENST00000635750 MBD3L3A6NE82 208 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-209ENST00000635750 MBD3L5A6NJ08 208 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-209ENST00000635750 C5orf64Q2M2E5 130 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 MBD3L2Q8NHZ7 208 aaPredicted RBP4.57□□□□□ -1.68
SCN1A-209ENST00000635750 A0A1W2PR77 199 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 DEFB131AP59861 70 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 ZNF329Q86UD4 541 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 SCRT2Q9NQ03 307 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 EPOPA6NHQ4 379 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 BUB1B-PAK6H3BSN5 160 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 RAMP1O60894 148 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 NCR2O95944 276 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 ID3Q02535 119 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 EFNB3Q15768 340 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 TICRRQ7Z2Z1 1910 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 MST1LQ2TV78 715 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 CTHRC1Q96CG8 243 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 RHPN1-AS1Q9BWJ2 59 aa4.57□□□□□ -1.68
SCN1A-209ENST00000635750 IGKV2D-24A0A075B6R9 120 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 A0A1B0GWJ7 208 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 D6R8Y8 96 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 J3QLI3 93 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 ZNF503Q96F45 646 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 WFDC6Q9BQY6 131 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 SRSF8Q9BRL6 282 aaKnown RBP4.56□□□□□ -1.68
SCN1A-209ENST00000635750 LAMTOR2Q9Y2Q5 125 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 LCTP09848 1927 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 TRBV6-7A0A0A0MS04 114 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 ANGP03950 147 aaKnown RBP4.56□□□□□ -1.68
SCN1A-209ENST00000635750 SELLP14151 372 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 Q71RC1 249 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-209ENST00000635750 NEGR1Q7Z3B1 354 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 NMBP08949 121 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 LYPD1Q8N2G4 141 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 SPANXDQ9BXN6 97 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 CNOT1A5YKK6 2376 aaKnown RBP4.56□□□□□ -1.68
SCN1A-209ENST00000635750 SERF1AO75920 110 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 PSG3Q16557 428 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 PPP1R3EQ9H7J1 279 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 GSN-AS1Q9NRJ2 163 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 XCL2Q9UBD3 114 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 FBLN5Q9UBX5 448 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 PFN2P35080 140 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 SAA4P35542 130 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 IGLV3-21P80748 117 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-209ENST00000635750 EXOC3-AS1Q8N2X6 119 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 C14orf178Q8N769 122 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-209ENST00000635750 NYNRINQ9P2P1 1898 aaKnown RBP4.56□□□□□ -1.68
SCN1A-209ENST00000635750 A0A087WWL8 130 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 TRBV5-3A0A0A0MS03 114 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 A0A0G2JNJ9 132 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 I3L3M4 83 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 ERVH48-1M5A8F1 160 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 HEPN1Q6WQI6 88 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 ZNF525Q8N782 197 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 IGF2BP2-AS1Q96M15 143 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 Q9UFV3 132 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 RPUSD1Q9UJJ7 312 aaKnown RBP4.56□□□□□ -1.68
SCN1A-209ENST00000635750 KLK5Q9Y337 293 aaPredicted RBP4.56□□□□□ -1.68
SCN1A-209ENST00000635750 MGAMO43451 1857 aa4.56□□□□□ -1.68
SCN1A-209ENST00000635750 PRSS29PA6NIE9 313 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 SH2D1AO60880 128 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 NDUFB1O75438 58 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 CD200R1LQ6Q8B3 271 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 SCRT1Q9BWW7 348 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 SBF2Q86WG5 1849 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 SIPA1L3O60292 1781 aaPredicted RBP4.55□□□□□ -1.68
SCN1A-209ENST00000635750 PCNX1Q96RV3 2341 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 GAGE12JA6NER3 117 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 EFNA2O43921 213 aa4.55□□□□□ -1.68
SCN1A-209ENST00000635750 IGHG4P01861 327 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms