RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 BIRC6Q9NR09 4857 aa13.7□□□□□ -0.22
CCDC28A-203ENST00000617445 IGHV4-4A0A075B6R2 117 aa13.7□□□□□ -0.22
CCDC28A-203ENST00000617445 DEFB131BA0A096LNP1 70 aa13.7□□□□□ -0.22
CCDC28A-203ENST00000617445 A8MTW9 85 aa13.7□□□□□ -0.22
CCDC28A-203ENST00000617445 K7EPK0 472 aa13.7□□□□□ -0.22
CCDC28A-203ENST00000617445 PLA2G10O15496 165 aa13.7□□□□□ -0.22
CCDC28A-203ENST00000617445 DEDDO75618 318 aa13.7□□□□□ -0.22
CCDC28A-203ENST00000617445 SPART-AS1P0CW21 52 aa13.7□□□□□ -0.22
CCDC28A-203ENST00000617445 RPL7P18124 248 aaKnown RBP13.7□□□□□ -0.22
CCDC28A-203ENST00000617445 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.7□□□□□ -0.22
CCDC28A-203ENST00000617445 ZBTB8BQ8NAP8 495 aaPredicted RBP13.7□□□□□ -0.22
CCDC28A-203ENST00000617445 SHANK2-AS3Q9BTD1 123 aa13.7□□□□□ -0.22
CCDC28A-203ENST00000617445 GGACTQ9BVM4 153 aa13.7□□□□□ -0.22
CCDC28A-203ENST00000617445 SLC25A39Q9BZJ4 359 aaPredicted RBP13.7□□□□□ -0.22
CCDC28A-203ENST00000617445 MGAT4CQ9UBM8 478 aa13.7□□□□□ -0.22
CCDC28A-203ENST00000617445 CELA1Q9UNI1 258 aa13.7□□□□□ -0.22
CCDC28A-203ENST00000617445 H3BRN7 92 aa13.69□□□□□ -0.22
CCDC28A-203ENST00000617445 DUSP14O95147 198 aaKnown RBP13.69□□□□□ -0.22
CCDC28A-203ENST00000617445 AMBPP02760 352 aa13.69□□□□□ -0.22
CCDC28A-203ENST00000617445 METTL15P1P0C7V9 234 aa13.69□□□□□ -0.22
CCDC28A-203ENST00000617445 FXYD7P58549 80 aa13.69□□□□□ -0.22
CCDC28A-203ENST00000617445 PXDC1Q5TGL8 231 aa13.69□□□□□ -0.22
CCDC28A-203ENST00000617445 TEPPQ6URK8 271 aa13.69□□□□□ -0.22
CCDC28A-203ENST00000617445 C20orf173Q96LM9 149 aa13.69□□□□□ -0.22
CCDC28A-203ENST00000617445 SLC35B3Q9H1N7 401 aa13.69□□□□□ -0.22
CCDC28A-203ENST00000617445 GSKIPQ9P0R6 139 aa13.69□□□□□ -0.22
CCDC28A-203ENST00000617445 F6UB75 175 aa13.68□□□□□ -0.22
CCDC28A-203ENST00000617445 SCGB1D2O95969 90 aa13.68□□□□□ -0.22
CCDC28A-203ENST00000617445 LINC00869P0C866 280 aa13.68□□□□□ -0.22
CCDC28A-203ENST00000617445 C17orf77Q96MU5 243 aa13.68□□□□□ -0.22
CCDC28A-203ENST00000617445 SCRT1Q9BWW7 348 aa13.68□□□□□ -0.22
CCDC28A-203ENST00000617445 C20orf85Q9H1P6 137 aa13.68□□□□□ -0.22
CCDC28A-203ENST00000617445 IGHV3OR16-12A0A075B7B8 117 aa13.67□□□□□ -0.22
CCDC28A-203ENST00000617445 HBE1P02100 147 aa13.67□□□□□ -0.22
CCDC28A-203ENST00000617445 OR5G3P0C626 314 aa13.67□□□□□ -0.22
CCDC28A-203ENST00000617445 RRAS2P62070 204 aaPredicted RBP13.67□□□□□ -0.22
CCDC28A-203ENST00000617445 ZNF846Q147U1 533 aa13.67□□□□□ -0.22
CCDC28A-203ENST00000617445 PTTG2Q9NZH5 202 aa13.67□□□□□ -0.22
CCDC28A-203ENST00000617445 RCL1Q9Y2P8 373 aaKnown RBP13.67□□□□□ -0.22
CCDC28A-203ENST00000617445 MBPP02686 304 aaPredicted RBP13.66□□□□□ -0.22
CCDC28A-203ENST00000617445 TCRBP04435 133 aa13.66□□□□□ -0.22
CCDC28A-203ENST00000617445 PRR20EP86478 221 aa13.66□□□□□ -0.22
CCDC28A-203ENST00000617445 PRR20CP86479 221 aa13.66□□□□□ -0.22
CCDC28A-203ENST00000617445 PRR20DP86480 221 aa13.66□□□□□ -0.22
CCDC28A-203ENST00000617445 PRR20BP86481 221 aa13.66□□□□□ -0.22
CCDC28A-203ENST00000617445 PRR20AP86496 221 aa13.66□□□□□ -0.22
CCDC28A-203ENST00000617445 FAM210BQ96KR6 192 aa13.66□□□□□ -0.22
CCDC28A-203ENST00000617445 IGF2BP2-AS1Q96M15 143 aa13.66□□□□□ -0.22
CCDC28A-203ENST00000617445 NDUFAF3Q9BU61 184 aa13.66□□□□□ -0.22
CCDC28A-203ENST00000617445 BATF3Q9NR55 127 aa13.66□□□□□ -0.22
CCDC28A-203ENST00000617445 A0A087X0K7 114 aa13.65□□□□□ -0.22
CCDC28A-203ENST00000617445 C7orf66A4D0T2 115 aa13.65□□□□□ -0.22
CCDC28A-203ENST00000617445 GOSR2O14653 212 aa13.65□□□□□ -0.22
CCDC28A-203ENST00000617445 CCNKO75909 580 aa13.65□□□□□ -0.22
CCDC28A-203ENST00000617445 EMP1P54849 157 aa13.65□□□□□ -0.22
CCDC28A-203ENST00000617445 B2MP61769 119 aa13.65□□□□□ -0.22
CCDC28A-203ENST00000617445 OXA1LQ15070 435 aa13.65□□□□□ -0.22
CCDC28A-203ENST00000617445 AMTNQ6UX39 209 aa13.65□□□□□ -0.22
CCDC28A-203ENST00000617445 ZNF546Q86UE3 836 aa13.65□□□□□ -0.22
CCDC28A-203ENST00000617445 C1orf158Q8N1D5 194 aa13.65□□□□□ -0.22
CCDC28A-203ENST00000617445 ARL6Q9H0F7 186 aa13.65□□□□□ -0.22
CCDC28A-203ENST00000617445 DKK2Q9UBU2 259 aa13.65□□□□□ -0.22
CCDC28A-203ENST00000617445 TRAV8-2A0A0B4J237 113 aa13.64□□□□□ -0.23
CCDC28A-203ENST00000617445 L7N2F9 121 aa13.64□□□□□ -0.23
CCDC28A-203ENST00000617445 CNN1P51911 297 aaKnown RBP13.64□□□□□ -0.23
CCDC28A-203ENST00000617445 VAMP2P63027 116 aa13.64□□□□□ -0.23
CCDC28A-203ENST00000617445 FGL1Q08830 312 aa13.64□□□□□ -0.23
CCDC28A-203ENST00000617445 RRN3P1Q2M238 152 aa13.64□□□□□ -0.23
CCDC28A-203ENST00000617445 ZNF767PQ75MW2 155 aa13.64□□□□□ -0.23
CCDC28A-203ENST00000617445 ZNF431Q8TF32 576 aaPredicted RBP13.64□□□□□ -0.23
CCDC28A-203ENST00000617445 NIPSNAP3BQ9BS92 247 aa13.64□□□□□ -0.23
CCDC28A-203ENST00000617445 P0DMU3 169 aa13.63□□□□□ -0.23
CCDC28A-203ENST00000617445 FAM231AP0DMU4 169 aa13.63□□□□□ -0.23
CCDC28A-203ENST00000617445 FAM231CP0DMU5 169 aa13.63□□□□□ -0.23
CCDC28A-203ENST00000617445 MZT2BQ6NZ67 158 aa13.63□□□□□ -0.23
CCDC28A-203ENST00000617445 GSG1LQ6UXU4 331 aa13.63□□□□□ -0.23
CCDC28A-203ENST00000617445 OR11H7Q8NGC8 314 aa13.63□□□□□ -0.23
CCDC28A-203ENST00000617445 LRRC20Q8TCA0 184 aa13.63□□□□□ -0.23
CCDC28A-203ENST00000617445 UHRF2Q96PU4 802 aa13.63□□□□□ -0.23
CCDC28A-203ENST00000617445 TMEM208Q9BTX3 173 aa13.63□□□□□ -0.23
CCDC28A-203ENST00000617445 ARV1Q9H2C2 271 aa13.63□□□□□ -0.23
CCDC28A-203ENST00000617445 FRAS1Q86XX4 4008 aa13.62□□□□□ -0.23
CCDC28A-203ENST00000617445 LOC102723971A0A1B0GUV8 181 aa13.62□□□□□ -0.23
CCDC28A-203ENST00000617445 AGPAT2O15120 278 aa13.62□□□□□ -0.23
CCDC28A-203ENST00000617445 CXCL2P19875 107 aa13.62□□□□□ -0.23
CCDC28A-203ENST00000617445 SLC38A11Q08AI6 406 aa13.62□□□□□ -0.23
CCDC28A-203ENST00000617445 RAB31Q13636 194 aa13.62□□□□□ -0.23
CCDC28A-203ENST00000617445 FAM222AQ5U5X8 452 aa13.62□□□□□ -0.23
CCDC28A-203ENST00000617445 PATE2Q6UY27 113 aa13.62□□□□□ -0.23
CCDC28A-203ENST00000617445 RNF182Q8N6D2 247 aa13.62□□□□□ -0.23
CCDC28A-203ENST00000617445 ZNF738Q8NE65 137 aa13.62□□□□□ -0.23
CCDC28A-203ENST00000617445 NUDT15Q9NV35 164 aa13.62□□□□□ -0.23
CCDC28A-203ENST00000617445 TRAV6A0A075B6T7 132 aa13.61□□□□□ -0.23
CCDC28A-203ENST00000617445 FAM240BA0A1B0GVZ2 78 aa13.61□□□□□ -0.23
CCDC28A-203ENST00000617445 C5orf51A6NDU8 294 aa13.61□□□□□ -0.23
CCDC28A-203ENST00000617445 INSP01308 110 aa13.61□□□□□ -0.23
CCDC28A-203ENST00000617445 CXCL3P19876 107 aa13.61□□□□□ -0.23
CCDC28A-203ENST00000617445 ARL16Q0P5N6 197 aa13.61□□□□□ -0.23
CCDC28A-203ENST00000617445 ASAH1Q13510 395 aa13.61□□□□□ -0.23
CCDC28A-203ENST00000617445 PSG3Q16557 428 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms