RNA–Protein interactions for RNA: ENST00000573474.5

CCDC40-209, Transcript of coiled-coil domain containing 40, humanhuman

TSL 4

Gene CCDC40, Length 554 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-209ENST00000573474 C11orf44Q8N8P7 122 aa10.48□□□□□ -0.73
CCDC40-209ENST00000573474 OR1N2Q8NGR9 330 aa10.48□□□□□ -0.73
CCDC40-209ENST00000573474 DPF1Q92782 380 aa10.48□□□□□ -0.73
CCDC40-209ENST00000573474 FXYD5Q96DB9 178 aa10.48□□□□□ -0.73
CCDC40-209ENST00000573474 NARS2Q96I59 477 aaKnown RBP10.48□□□□□ -0.73
CCDC40-209ENST00000573474 CITED2Q99967 270 aaPredicted RBP10.48□□□□□ -0.73
CCDC40-209ENST00000573474 UFC1Q9Y3C8 167 aa10.48□□□□□ -0.73
CCDC40-209ENST00000573474 ARL2-SNX15V9GYD0 113 aa10.48□□□□□ -0.73
CCDC40-209ENST00000573474 LGALS9O00182 355 aa10.47□□□□□ -0.73
CCDC40-209ENST00000573474 BUB3O43684 328 aa10.47□□□□□ -0.73
CCDC40-209ENST00000573474 ATP6V1G1O75348 118 aa10.47□□□□□ -0.73
CCDC40-209ENST00000573474 HIST1H1EP10412 219 aaKnown RBP10.47□□□□□ -0.73
CCDC40-209ENST00000573474 RPL7P18124 248 aaKnown RBP10.47□□□□□ -0.73
CCDC40-209ENST00000573474 HOXD3P31249 432 aaPredicted RBP10.47□□□□□ -0.73
CCDC40-209ENST00000573474 REC114Q7Z4M0 266 aa10.47□□□□□ -0.73
CCDC40-209ENST00000573474 OR8I2Q8N0Y5 310 aa10.47□□□□□ -0.73
CCDC40-209ENST00000573474 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.47□□□□□ -0.73
CCDC40-209ENST00000573474 OR11H1Q8NG94 326 aa10.47□□□□□ -0.73
CCDC40-209ENST00000573474 OR4F17Q8NGA8 305 aa10.47□□□□□ -0.73
CCDC40-209ENST00000573474 RXFP4Q8TDU9 374 aa10.47□□□□□ -0.73
CCDC40-209ENST00000573474 GPR82Q96P67 336 aa10.47□□□□□ -0.73
CCDC40-209ENST00000573474 OR4F4Q96R69 305 aa10.47□□□□□ -0.73
CCDC40-209ENST00000573474 TXNDC17Q9BRA2 123 aa10.47□□□□□ -0.73
CCDC40-209ENST00000573474 TMEM231Q9H6L2 316 aa10.47□□□□□ -0.73
CCDC40-209ENST00000573474 DAZ1Q9NQZ3 744 aaKnown RBP10.47□□□□□ -0.73
CCDC40-209ENST00000573474 A0A1W2PS18 150 aa10.46□□□□□ -0.73
CCDC40-209ENST00000573474 FAM74A7A6NL05 159 aa10.46□□□□□ -0.73
CCDC40-209ENST00000573474 MRPS12O15235 138 aaKnown RBP10.46□□□□□ -0.73
CCDC40-209ENST00000573474 NBEAP1P0C6P0 100 aa10.46□□□□□ -0.73
CCDC40-209ENST00000573474 UBE2G2P60604 165 aa10.46□□□□□ -0.73
CCDC40-209ENST00000573474 KLF5Q13887 457 aaPredicted RBP10.46□□□□□ -0.73
CCDC40-209ENST00000573474 DEFB136Q30KP8 78 aa10.46□□□□□ -0.73
CCDC40-209ENST00000573474 CST9LP1Q5W188 147 aa10.46□□□□□ -0.73
CCDC40-209ENST00000573474 C1QL4Q86Z23 238 aa10.46□□□□□ -0.73
CCDC40-209ENST00000573474 MAST4O15021 2626 aa10.46□□□□□ -0.74
CCDC40-209ENST00000573474 IGHV7-4-1A0A0J9YVY3 117 aa10.45□□□□□ -0.74
CCDC40-209ENST00000573474 A0A1W2PRE2 83 aa10.45□□□□□ -0.74
CCDC40-209ENST00000573474 A0A1W2PRX2 142 aa10.45□□□□□ -0.74
CCDC40-209ENST00000573474 C9JQL5 133 aa10.45□□□□□ -0.74
CCDC40-209ENST00000573474 NDUFS6O75380 124 aaKnown RBP10.45□□□□□ -0.74
CCDC40-209ENST00000573474 APOHP02749 345 aaPredicted RBP10.45□□□□□ -0.74
CCDC40-209ENST00000573474 SYNJ2BPP57105 145 aa10.45□□□□□ -0.74
CCDC40-209ENST00000573474 MEF2BQ02080 365 aaPredicted RBP10.45□□□□□ -0.74
CCDC40-209ENST00000573474 TM4SF20Q53R12 229 aa10.45□□□□□ -0.74
CCDC40-209ENST00000573474 C16orf54Q6UWD8 224 aa10.45□□□□□ -0.74
CCDC40-209ENST00000573474 C8orf86Q6ZUL3 223 aa10.45□□□□□ -0.74
CCDC40-209ENST00000573474 GRAMD2BQ96HH9 432 aa10.45□□□□□ -0.74
CCDC40-209ENST00000573474 NKX6-2Q9C056 277 aaPredicted RBP10.45□□□□□ -0.74
CCDC40-209ENST00000573474 YTHDF2Q9Y5A9 579 aaKnown RBP10.45□□□□□ -0.74
CCDC40-209ENST00000573474 NIPBLQ6KC79 2804 aaeCLIP10.44□□□□□ -0.74
CCDC40-209ENST00000573474 C2CD3Q4AC94 2353 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 IGHV3-49A0A0A0MS15 119 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 TMEM218A2RU14 115 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 A8MWP6 167 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 C11orf94C9JXX5 98 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 H3BQ15 152 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 SRP19P09132 144 aaKnown RBP10.44□□□□□ -0.74
CCDC40-209ENST00000573474 IGLC2P0DOY2 106 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 BMI1P35226 326 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 GALR1P47211 349 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 CD81P60033 236 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 KRTAP10-3P60369 221 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 HIST2H2BDQ6DRA6 164 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 BLNKQ8WV28 456 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 RAX2Q96IS3 184 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 SLC35B3Q9H1N7 401 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 ZNF586Q9NXT0 402 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 SMPXQ9UHP9 88 aa10.44□□□□□ -0.74
CCDC40-209ENST00000573474 TRBV19A0A075B6N1 114 aa10.43□□□□□ -0.74
CCDC40-209ENST00000573474 IGHV3OR16-13A0A075B7E8 117 aa10.43□□□□□ -0.74
CCDC40-209ENST00000573474 IGHV3-74A0A0B4J1X5 117 aa10.43□□□□□ -0.74
CCDC40-209ENST00000573474 IGHV3-66A0A0C4DH42 116 aa10.43□□□□□ -0.74
CCDC40-209ENST00000573474 KRBOX1C9JBD0 128 aa10.43□□□□□ -0.74
CCDC40-209ENST00000573474 CCL24O00175 119 aa10.43□□□□□ -0.74
CCDC40-209ENST00000573474 PDE6DO43924 150 aa10.43□□□□□ -0.74
CCDC40-209ENST00000573474 SNRPCP09234 159 aaKnown RBP10.43□□□□□ -0.74
CCDC40-209ENST00000573474 ATF4P18848 351 aaPredicted RBP10.43□□□□□ -0.74
CCDC40-209ENST00000573474 S100A1P23297 94 aa10.43□□□□□ -0.74
CCDC40-209ENST00000573474 ATP5G3P48201 142 aa10.43□□□□□ -0.74
CCDC40-209ENST00000573474 SLURP1P55000 103 aa10.43□□□□□ -0.74
CCDC40-209ENST00000573474 NDUFA11Q86Y39 141 aa10.43□□□□□ -0.74
CCDC40-209ENST00000573474 GLMPQ8WWB7 406 aa10.43□□□□□ -0.74
CCDC40-209ENST00000573474 ELOVL1Q9BW60 279 aa10.43□□□□□ -0.74
CCDC40-209ENST00000573474 RHPN1-AS1Q9BWJ2 59 aa10.43□□□□□ -0.74
CCDC40-209ENST00000573474 SMAD5-AS1Q9Y6J3 95 aa10.43□□□□□ -0.74
CCDC40-209ENST00000573474 TMEM213A2RRL7 107 aa10.42□□□□□ -0.74
CCDC40-209ENST00000573474 ZNF785A8K8V0 405 aa10.42□□□□□ -0.74
CCDC40-209ENST00000573474 ADARB2-AS1A8MUL3 147 aa10.42□□□□□ -0.74
CCDC40-209ENST00000573474 F6UZH7 168 aa10.42□□□□□ -0.74
CCDC40-209ENST00000573474 CHEK1O14757 476 aa10.42□□□□□ -0.74
CCDC40-209ENST00000573474 SFTA3P0C7M3 94 aa10.42□□□□□ -0.74
CCDC40-209ENST00000573474 RANP62826 216 aaKnown RBP10.42□□□□□ -0.74
CCDC40-209ENST00000573474 FHL3Q13643 280 aa10.42□□□□□ -0.74
CCDC40-209ENST00000573474 PDE6HQ13956 83 aa10.42□□□□□ -0.74
CCDC40-209ENST00000573474 DUX3Q96PT4 197 aa10.42□□□□□ -0.74
CCDC40-209ENST00000573474 PEMTQ9UBM1 199 aa10.42□□□□□ -0.74
CCDC40-209ENST00000573474 TEP1Q99973 2627 aaKnown RBP10.41□□□□□ -0.74
CCDC40-209ENST00000573474 A0A087X0K7 114 aa10.41□□□□□ -0.74
CCDC40-209ENST00000573474 TMEM250H0YL14 139 aa10.41□□□□□ -0.74
CCDC40-209ENST00000573474 H3BTX0 84 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 185 ms