RNA–Protein interactions for RNA: ENST00000568139.5

CLK3-221, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 918 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-221ENST00000568139 SCP2D1Q9UJQ7 156 aa12.29□□□□□ -0.44
CLK3-221ENST00000568139 ANKRD20A5PA0PJZ0 165 aa12.28□□□□□ -0.44
CLK3-221ENST00000568139 RGS5O15539 181 aa12.28□□□□□ -0.44
CLK3-221ENST00000568139 SRPXP78539 464 aa12.28□□□□□ -0.44
CLK3-221ENST00000568139 IGFL4Q6B9Z1 124 aa12.28□□□□□ -0.44
CLK3-221ENST00000568139 SPATA12Q7Z6I5 190 aa12.28□□□□□ -0.44
CLK3-221ENST00000568139 BAP18Q8IXM2 172 aa12.28□□□□□ -0.44
CLK3-221ENST00000568139 RNF141Q8WVD5 230 aa12.28□□□□□ -0.44
CLK3-221ENST00000568139 SCRT2Q9NQ03 307 aa12.28□□□□□ -0.44
CLK3-221ENST00000568139 PRSS46E5RG02 174 aa12.27□□□□□ -0.45
CLK3-221ENST00000568139 IAPPP10997 89 aa12.27□□□□□ -0.45
CLK3-221ENST00000568139 TMEM182Q6ZP80 229 aaPredicted RBP12.27□□□□□ -0.45
CLK3-221ENST00000568139 TRAV12-2A0A075B6T6 113 aa12.26□□□□□ -0.45
CLK3-221ENST00000568139 BOLA2-SMG1P6H3BVE0 249 aa12.26□□□□□ -0.45
CLK3-221ENST00000568139 ANXA3P12429 323 aa12.26□□□□□ -0.45
CLK3-221ENST00000568139 ORM2P19652 201 aa12.26□□□□□ -0.45
CLK3-221ENST00000568139 GATA2P23769 480 aaPredicted RBP12.26□□□□□ -0.45
CLK3-221ENST00000568139 SSX7Q7RTT5 188 aa12.26□□□□□ -0.45
CLK3-221ENST00000568139 TMEM256Q8N2U0 113 aa12.26□□□□□ -0.45
CLK3-221ENST00000568139 RNF182Q8N6D2 247 aa12.26□□□□□ -0.45
CLK3-221ENST00000568139 BPIFCQ8NFQ6 507 aa12.26□□□□□ -0.45
CLK3-221ENST00000568139 Q9H8V8 135 aa12.26□□□□□ -0.45
CLK3-221ENST00000568139 RABL2AQ9UBK7 228 aaPredicted RBP12.26□□□□□ -0.45
CLK3-221ENST00000568139 RABL2BQ9UNT1 228 aa12.26□□□□□ -0.45
CLK3-221ENST00000568139 PIGBOS1A0A0B4J2F0 54 aa12.25□□□□□ -0.45
CLK3-221ENST00000568139 DUXBA0A1W2PPF3 345 aa12.25□□□□□ -0.45
CLK3-221ENST00000568139 S100A7P31151 101 aa12.25□□□□□ -0.45
CLK3-221ENST00000568139 TAS2R60P59551 318 aa12.25□□□□□ -0.45
CLK3-221ENST00000568139 IL18Q14116 193 aa12.25□□□□□ -0.45
CLK3-221ENST00000568139 CLINT1Q14677 625 aa12.25□□□□□ -0.45
CLK3-221ENST00000568139 LINC01587Q99440 93 aa12.25□□□□□ -0.45
CLK3-221ENST00000568139 TMEM147Q9BVK8 224 aa12.25□□□□□ -0.45
CLK3-221ENST00000568139 SLC25A39Q9BZJ4 359 aaPredicted RBP12.25□□□□□ -0.45
CLK3-221ENST00000568139 PAIP2BQ9ULR5 123 aaKnown RBP12.25□□□□□ -0.45
CLK3-221ENST00000568139 APOBP04114 4563 aaKnown RBP12.25□□□□□ -0.45
CLK3-221ENST00000568139 MED6O75586 246 aa12.24□□□□□ -0.45
CLK3-221ENST00000568139 SLC25A6P12236 298 aa12.24□□□□□ -0.45
CLK3-221ENST00000568139 ZNF738Q8NE65 137 aa12.24□□□□□ -0.45
CLK3-221ENST00000568139 C16orf74Q96GX8 76 aa12.24□□□□□ -0.45
CLK3-221ENST00000568139 DIRAS2Q96HU8 199 aa12.24□□□□□ -0.45
CLK3-221ENST00000568139 TIMM8BQ9Y5J9 83 aaPredicted RBP12.24□□□□□ -0.45
CLK3-221ENST00000568139 H3BRN7 92 aa12.23□□□□□ -0.45
CLK3-221ENST00000568139 RPP30P78346 268 aaKnown RBP12.23□□□□□ -0.45
CLK3-221ENST00000568139 FGL1Q08830 312 aa12.23□□□□□ -0.45
CLK3-221ENST00000568139 CIB3Q96Q77 187 aaPredicted RBP12.23□□□□□ -0.45
CLK3-221ENST00000568139 KRTAP1-5Q9BYS1 174 aa12.23□□□□□ -0.45
CLK3-221ENST00000568139 BTF3P20290 206 aaKnown RBP12.22□□□□□ -0.45
CLK3-221ENST00000568139 KRTAP10-2P60368 255 aa12.22□□□□□ -0.45
CLK3-221ENST00000568139 HIST1H1AQ02539 215 aaPredicted RBP12.22□□□□□ -0.45
CLK3-221ENST00000568139 TTC32Q5I0X7 151 aa12.22□□□□□ -0.45
CLK3-221ENST00000568139 ZNF493Q6ZR52 646 aa12.22□□□□□ -0.45
CLK3-221ENST00000568139 LRTM2Q8N967 370 aa12.22□□□□□ -0.45
CLK3-221ENST00000568139 OR8A1Q8NGG7 326 aa12.22□□□□□ -0.45
CLK3-221ENST00000568139 SHANK2-AS3Q9BTD1 123 aa12.22□□□□□ -0.45
CLK3-221ENST00000568139 Q9H3A6 140 aa12.22□□□□□ -0.45
CLK3-221ENST00000568139 MCUBQ9NWR8 336 aa12.22□□□□□ -0.45
CLK3-221ENST00000568139 SYNGR2O43760 224 aa12.21□□□□□ -0.45
CLK3-221ENST00000568139 SMIM18P0DKX4 95 aa12.21□□□□□ -0.45
CLK3-221ENST00000568139 HTN1P15515 57 aa12.21□□□□□ -0.45
CLK3-221ENST00000568139 RPL7P18124 248 aaKnown RBP12.21□□□□□ -0.45
CLK3-221ENST00000568139 CXCL3P19876 107 aa12.21□□□□□ -0.45
CLK3-221ENST00000568139 RHOBP62745 196 aa12.21□□□□□ -0.45
CLK3-221ENST00000568139 TMEM144Q7Z5S9 345 aa12.21□□□□□ -0.45
CLK3-221ENST00000568139 RNASE8Q8TDE3 154 aaKnown RBP12.21□□□□□ -0.45
CLK3-221ENST00000568139 ZNF503Q96F45 646 aa12.21□□□□□ -0.45
CLK3-221ENST00000568139 UPK3BQ9BT76 320 aa12.21□□□□□ -0.45
CLK3-221ENST00000568139 NOP10Q9NPE3 64 aaKnown RBP12.21□□□□□ -0.45
CLK3-221ENST00000568139 DNAH5Q8TE73 4624 aa12.21□□□□□ -0.45
CLK3-221ENST00000568139 A0A087X0K7 114 aa12.2□□□□□ -0.46
CLK3-221ENST00000568139 WRBO00258 174 aa12.2□□□□□ -0.46
CLK3-221ENST00000568139 AKR1C1Q04828 323 aa12.2□□□□□ -0.46
CLK3-221ENST00000568139 SPCS2Q15005 226 aa12.2□□□□□ -0.46
CLK3-221ENST00000568139 PSG3Q16557 428 aa12.2□□□□□ -0.46
CLK3-221ENST00000568139 TMEM128Q5BJH2 165 aa12.2□□□□□ -0.46
CLK3-221ENST00000568139 LINC00612Q8N6U2 182 aa12.2□□□□□ -0.46
CLK3-221ENST00000568139 OR10J6PQ8NGY7 276 aa12.2□□□□□ -0.46
CLK3-221ENST00000568139 RXFP4Q8TDU9 374 aa12.2□□□□□ -0.46
CLK3-221ENST00000568139 TMEM263Q8WUH6 116 aaKnown RBP12.2□□□□□ -0.46
CLK3-221ENST00000568139 GNPNAT1Q96EK6 184 aaPredicted RBP12.2□□□□□ -0.46
CLK3-221ENST00000568139 PPP1R14DQ9NXH3 145 aa12.2□□□□□ -0.46
CLK3-221ENST00000568139 A0A1W2PPQ1 181 aa12.19□□□□□ -0.46
CLK3-221ENST00000568139 CDKN1BP46527 198 aa12.19□□□□□ -0.46
CLK3-221ENST00000568139 PLP1P60201 277 aa12.19□□□□□ -0.46
CLK3-221ENST00000568139 RAP2BP61225 183 aa12.19□□□□□ -0.46
CLK3-221ENST00000568139 SPANXN5Q5MJ07 72 aa12.19□□□□□ -0.46
CLK3-221ENST00000568139 CYP2G1PQ6ZSU1 146 aa12.19□□□□□ -0.46
CLK3-221ENST00000568139 UHRF2Q96PU4 802 aa12.19□□□□□ -0.46
CLK3-221ENST00000568139 RSL24D1Q9UHA3 163 aaKnown RBP12.19□□□□□ -0.46
CLK3-221ENST00000568139 HIGD1AQ9Y241 93 aa12.19□□□□□ -0.46
CLK3-221ENST00000568139 TRAV26-1A0A087WT03 109 aa12.18□□□□□ -0.46
CLK3-221ENST00000568139 M6PRP20645 277 aa12.18□□□□□ -0.46
CLK3-221ENST00000568139 OR5I1Q13606 314 aa12.18□□□□□ -0.46
CLK3-221ENST00000568139 ESRGQ1W209 222 aa12.18□□□□□ -0.46
CLK3-221ENST00000568139 ACOT7LQ6ZUV0 252 aa12.18□□□□□ -0.46
CLK3-221ENST00000568139 TMED4Q7Z7H5 227 aa12.18□□□□□ -0.46
CLK3-221ENST00000568139 SOSTQ9BQB4 213 aa12.18□□□□□ -0.46
CLK3-221ENST00000568139 H7BYZ3 331 aa12.17□□□□□ -0.46
CLK3-221ENST00000568139 ZNF701M0R085 212 aaPredicted RBP12.17□□□□□ -0.46
CLK3-221ENST00000568139 HYPMO75409 117 aa12.17□□□□□ -0.46
CLK3-221ENST00000568139 IL5P05113 134 aa12.17□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms