RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 BMPR1BO00238 502 aa6.94□□□□□ -1.3
VPS39-207ENST00000563692 NDUFB4O95168 129 aa6.94□□□□□ -1.3
VPS39-207ENST00000563692 IGHV3-23P01764 117 aa6.94□□□□□ -1.3
VPS39-207ENST00000563692 NBEAP1P0C6P0 100 aa6.94□□□□□ -1.3
VPS39-207ENST00000563692 PPIFP30405 207 aaKnown RBP6.94□□□□□ -1.3
VPS39-207ENST00000563692 RAB9AP51151 201 aa6.94□□□□□ -1.3
VPS39-207ENST00000563692 TPPP2P59282 170 aa6.94□□□□□ -1.3
VPS39-207ENST00000563692 SUMO1P63165 101 aaKnown RBP6.94□□□□□ -1.3
VPS39-207ENST00000563692 KIAA0141Q14154 515 aaPredicted RBP6.94□□□□□ -1.3
VPS39-207ENST00000563692 C19orf54Q5BKX5 351 aa6.94□□□□□ -1.3
VPS39-207ENST00000563692 FAM209BQ5JX69 171 aa6.94□□□□□ -1.3
VPS39-207ENST00000563692 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.94□□□□□ -1.3
VPS39-207ENST00000563692 OR4F17Q8NGA8 305 aa6.94□□□□□ -1.3
VPS39-207ENST00000563692 ZNF503Q96F45 646 aa6.94□□□□□ -1.3
VPS39-207ENST00000563692 SHANK2-AS3Q9BTD1 123 aa6.94□□□□□ -1.3
VPS39-207ENST00000563692 NPFFR1Q9GZQ6 430 aa6.94□□□□□ -1.3
VPS39-207ENST00000563692 GNB4Q9HAV0 340 aa6.94□□□□□ -1.3
VPS39-207ENST00000563692 RABAC1Q9UI14 185 aa6.94□□□□□ -1.3
VPS39-207ENST00000563692 YTHDF2Q9Y5A9 579 aaKnown RBP6.94□□□□□ -1.3
VPS39-207ENST00000563692 A0A087WWC5 75 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 CXorf65A6NEN9 183 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 HELTA6NFD8 242 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 F8W735 103 aaPredicted RBP6.93□□□□□ -1.3
VPS39-207ENST00000563692 M0QZ24 198 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 TGOLN2O43493 480 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 MT-ND4LP03901 98 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 PYYP10082 97 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 HIST1H1EP10412 219 aaKnown RBP6.93□□□□□ -1.3
VPS39-207ENST00000563692 PF4V1P10720 104 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 GPR183P32249 361 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 SLC35B1P78383 322 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 MORN5Q5VZ52 161 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 CLEC19AQ6UXS0 136 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 C11orf52Q96A22 123 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 FXYD5Q96DB9 178 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 CTDSP1Q9GZU7 261 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 TMEM242Q9NWH2 141 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 LINC00527Q9UJ94 153 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 MGAM2Q2M2H8 2515 aa6.93□□□□□ -1.3
VPS39-207ENST00000563692 TENM1Q9UKZ4 2725 aa6.92□□□□□ -1.3
VPS39-207ENST00000563692 ZNF98A6NK75 572 aa6.92□□□□□ -1.3
VPS39-207ENST00000563692 H3BRN7 92 aa6.92□□□□□ -1.3
VPS39-207ENST00000563692 TSPAN4O14817 238 aa6.92□□□□□ -1.3
VPS39-207ENST00000563692 IGLV1-40P01703 118 aa6.92□□□□□ -1.3
VPS39-207ENST00000563692 S100A9P06702 114 aaKnown RBP6.92□□□□□ -1.3
VPS39-207ENST00000563692 RPL7P18124 248 aaKnown RBP6.92□□□□□ -1.3
VPS39-207ENST00000563692 RANP62826 216 aaKnown RBP6.92□□□□□ -1.3
VPS39-207ENST00000563692 ADIRFQ15847 76 aa6.92□□□□□ -1.3
VPS39-207ENST00000563692 TMEM88Q6PEY1 159 aa6.92□□□□□ -1.3
VPS39-207ENST00000563692 C15orf54Q8N8G6 183 aa6.92□□□□□ -1.3
VPS39-207ENST00000563692 LINC01006Q8NI28 216 aa6.92□□□□□ -1.3
VPS39-207ENST00000563692 BLNKQ8WV28 456 aa6.92□□□□□ -1.3
VPS39-207ENST00000563692 HIST1H2BAQ96A08 127 aa6.92□□□□□ -1.3
VPS39-207ENST00000563692 NOL4LQ96MY1 436 aaPredicted RBP6.92□□□□□ -1.3
VPS39-207ENST00000563692 CHRDL1Q9BU40 450 aa6.92□□□□□ -1.3
VPS39-207ENST00000563692 PLXNB1O43157 2135 aa6.92□□□□□ -1.3
VPS39-207ENST00000563692 SCO2A0A1W2PP80 73 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 PGPA6NDG6 321 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 PPP1R2P9O14990 202 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 GP9P14770 177 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 NPPCP23582 126 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 CRYBB3P26998 211 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 ADMP35318 185 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 ARL3P36405 182 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 PROK1P58294 105 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 TAS2R60P59551 318 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 RPL23P62829 140 aaKnown RBP6.91□□□□□ -1.3
VPS39-207ENST00000563692 USF2Q15853 346 aaPredicted RBP6.91□□□□□ -1.3
VPS39-207ENST00000563692 LEMD1Q68G75 181 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 ZNF343Q6P1L6 599 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 TEX38Q6PEX7 206 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 TOMM20LQ6UXN7 152 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 Q6ZSV7 163 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 LYPD1Q8N2G4 141 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 CMTM2Q8TAZ6 248 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 ANAPC16Q96DE5 110 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 GPR82Q96P67 336 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 CITED1Q99966 193 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 C16orf95Q9H693 158 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 LY96Q9Y6Y9 160 aa6.91□□□□□ -1.3
VPS39-207ENST00000563692 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP6.9□□□□□ -1.3
VPS39-207ENST00000563692 GGTLC3B5MD39 225 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 C9JCJ5 164 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 IGHG4P01861 327 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 SLC25A5P05141 298 aaKnown RBP6.9□□□□□ -1.3
VPS39-207ENST00000563692 AKR1C3P42330 323 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 RPL35P42766 123 aaKnown RBP6.9□□□□□ -1.3
VPS39-207ENST00000563692 GNG4P50150 75 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 CNN1P51911 297 aaKnown RBP6.9□□□□□ -1.3
VPS39-207ENST00000563692 PSG9Q00887 426 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 CFHR3Q02985 330 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 C1orf194Q5T5A4 169 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 Q6ZS46 218 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 ZNF329Q86UD4 541 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 CBLN2Q8IUK8 224 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 OR8I2Q8N0Y5 310 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 OR4X2Q8NGF9 303 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 CCDC140Q96MF4 163 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 METTL26Q96S19 204 aa6.9□□□□□ -1.3
VPS39-207ENST00000563692 ELOVL1Q9BW60 279 aa6.9□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 632.3 ms