RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 LINC01545Q5VT33 79 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 PPP1R27Q86WC6 154 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 CCL17Q92583 94 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 RNASE6Q93091 150 aaKnown RBP10.91□□□□□ -0.66
VPS33A-208ENST00000543633 RITA1Q96K30 269 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 SGK494Q96LW2 274 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 SCRT2Q9NQ03 307 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 PLCE1Q9P212 2302 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 I3L2K1 104 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 K7EM74 188 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 THBDP07204 575 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 HTR1DP28221 377 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 RHOGP84095 191 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 S100A7AQ86SG5 101 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 DPF1Q92782 380 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 RASL11BQ9BPW5 248 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 SHANK2-AS3Q9BTD1 123 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 JKAMPQ9P055 326 aa10.91□□□□□ -0.66
VPS33A-208ENST00000543633 IGHV1-3A0A0C4DH29 117 aa10.9□□□□□ -0.66
VPS33A-208ENST00000543633 A0A0G2JNJ9 132 aa10.9□□□□□ -0.66
VPS33A-208ENST00000543633 H3BRN7 92 aa10.9□□□□□ -0.66
VPS33A-208ENST00000543633 HIST1H1AQ02539 215 aaPredicted RBP10.9□□□□□ -0.66
VPS33A-208ENST00000543633 GOLT1AQ6ZVE7 132 aa10.9□□□□□ -0.66
VPS33A-208ENST00000543633 BPIFA4PQ86YQ2 179 aa10.9□□□□□ -0.66
VPS33A-208ENST00000543633 GSX1Q9H4S2 264 aaPredicted RBP10.9□□□□□ -0.66
VPS33A-208ENST00000543633 NGBQ9NPG2 151 aa10.9□□□□□ -0.66
VPS33A-208ENST00000543633 Q9UFV3 132 aa10.9□□□□□ -0.66
VPS33A-208ENST00000543633 TRBV19A0A075B6N1 114 aa10.89□□□□□ -0.67
VPS33A-208ENST00000543633 K7ENP7 123 aa10.89□□□□□ -0.67
VPS33A-208ENST00000543633 M0QZ24 198 aa10.89□□□□□ -0.67
VPS33A-208ENST00000543633 LINC00173Q6ZV60 143 aa10.89□□□□□ -0.67
VPS33A-208ENST00000543633 PRNTQ86SH4 94 aa10.89□□□□□ -0.67
VPS33A-208ENST00000543633 CIARTQ8N365 385 aaPredicted RBP10.89□□□□□ -0.67
VPS33A-208ENST00000543633 DEFB125Q8N687 156 aa10.89□□□□□ -0.67
VPS33A-208ENST00000543633 PIEZO1Q92508 2521 aa10.89□□□□□ -0.67
VPS33A-208ENST00000543633 IGHV3-72A0A0B4J1Y9 119 aa10.89□□□□□ -0.67
VPS33A-208ENST00000543633 SERTM2A0A1B0GWG4 89 aa10.89□□□□□ -0.67
VPS33A-208ENST00000543633 PRRG2O14669 202 aa10.89□□□□□ -0.67
VPS33A-208ENST00000543633 BVES-AS1Q5T3Y7 98 aa10.89□□□□□ -0.67
VPS33A-208ENST00000543633 SRSF12Q8WXF0 261 aaKnown RBP10.89□□□□□ -0.67
VPS33A-208ENST00000543633 DYNLRB1Q9NP97 96 aa10.89□□□□□ -0.67
VPS33A-208ENST00000543633 AP5S1Q9NUS5 200 aa10.89□□□□□ -0.67
VPS33A-208ENST00000543633 INSIG2Q9Y5U4 225 aa10.89□□□□□ -0.67
VPS33A-208ENST00000543633 BSNQ9UPA5 3926 aa10.89□□□□□ -0.67
VPS33A-208ENST00000543633 hDV102S1A0JD36 115 aa10.88□□□□□ -0.67
VPS33A-208ENST00000543633 BUB1B-PAK6H3BSN5 160 aa10.88□□□□□ -0.67
VPS33A-208ENST00000543633 CSN1S1P47710 185 aa10.88□□□□□ -0.67
VPS33A-208ENST00000543633 MPV17L2Q567V2 206 aa10.88□□□□□ -0.67
VPS33A-208ENST00000543633 ZNF493Q6ZR52 646 aa10.88□□□□□ -0.67
VPS33A-208ENST00000543633 ARL6IP6Q8N6S5 226 aa10.88□□□□□ -0.67
VPS33A-208ENST00000543633 NEU4Q8WWR8 484 aaPredicted RBP10.88□□□□□ -0.67
VPS33A-208ENST00000543633 LOC105371242A0A075B767 164 aa10.87□□□□□ -0.67
VPS33A-208ENST00000543633 TAX1BP3O14907 124 aa10.87□□□□□ -0.67
VPS33A-208ENST00000543633 IGKV1-17P01599 117 aa10.87□□□□□ -0.67
VPS33A-208ENST00000543633 CNTFRP26992 372 aa10.87□□□□□ -0.67
VPS33A-208ENST00000543633 RBX1P62877 108 aa10.87□□□□□ -0.67
VPS33A-208ENST00000543633 PDE6HQ13956 83 aa10.87□□□□□ -0.67
VPS33A-208ENST00000543633 PSG3Q16557 428 aa10.87□□□□□ -0.67
VPS33A-208ENST00000543633 SIGLEC15Q6ZMC9 328 aa10.87□□□□□ -0.67
VPS33A-208ENST00000543633 OR4C5Q8NGB2 326 aa10.87□□□□□ -0.67
VPS33A-208ENST00000543633 ZC2HC1AQ96GY0 325 aa10.87□□□□□ -0.67
VPS33A-208ENST00000543633 RALYQ9UKM9 306 aaKnown RBP10.87□□□□□ -0.67
VPS33A-208ENST00000543633 TRAV8-1A0A0A6YYK1 113 aa10.87□□□□□ -0.67
VPS33A-208ENST00000543633 CDKN1BP46527 198 aa10.87□□□□□ -0.67
VPS33A-208ENST00000543633 OR10AG1Q8NH19 301 aa10.87□□□□□ -0.67
VPS33A-208ENST00000543633 TMUB1Q9BVT8 246 aa10.87□□□□□ -0.67
VPS33A-208ENST00000543633 PSG8Q9UQ74 426 aa10.87□□□□□ -0.67
VPS33A-208ENST00000543633 FBLL1A6NHQ2 334 aaKnown RBP10.86□□□□□ -0.67
VPS33A-208ENST00000543633 ZNF785A8K8V0 405 aa10.86□□□□□ -0.67
VPS33A-208ENST00000543633 H3BTX0 84 aa10.86□□□□□ -0.67
VPS33A-208ENST00000543633 ZZEF1O43149 2961 aa10.86□□□□□ -0.67
VPS33A-208ENST00000543633 CD5LO43866 347 aa10.86□□□□□ -0.67
VPS33A-208ENST00000543633 TOX4O94842 621 aa10.86□□□□□ -0.67
VPS33A-208ENST00000543633 NUDT3O95989 172 aa10.86□□□□□ -0.67
VPS33A-208ENST00000543633 COX8AP10176 69 aa10.86□□□□□ -0.67
VPS33A-208ENST00000543633 FA2HQ7L5A8 372 aa10.86□□□□□ -0.67
VPS33A-208ENST00000543633 EXOC3-AS1Q8N2X6 119 aa10.86□□□□□ -0.67
VPS33A-208ENST00000543633 ZNF48Q96MX3 618 aaPredicted RBP10.86□□□□□ -0.67
VPS33A-208ENST00000543633 ZNF747Q9BV97 191 aa10.86□□□□□ -0.67
VPS33A-208ENST00000543633 RAB1BQ9H0U4 201 aa10.86□□□□□ -0.67
VPS33A-208ENST00000543633 ARMS2P0C7Q2 107 aa10.85□□□□□ -0.67
VPS33A-208ENST00000543633 CD24P25063 80 aa10.85□□□□□ -0.67
VPS33A-208ENST00000543633 PCP4P48539 62 aa10.85□□□□□ -0.67
VPS33A-208ENST00000543633 RNASE8Q8TDE3 154 aaKnown RBP10.85□□□□□ -0.67
VPS33A-208ENST00000543633 RPEQ96AT9 228 aa10.85□□□□□ -0.67
VPS33A-208ENST00000543633 ABHD17AQ96GS6 310 aa10.85□□□□□ -0.67
VPS33A-208ENST00000543633 PTPRQQ9UMZ3 2332 aa10.85□□□□□ -0.67
VPS33A-208ENST00000543633 IGHV3-21A0A0B4J1V1 117 aa10.85□□□□□ -0.67
VPS33A-208ENST00000543633 SHISA9B4DS77 424 aa10.85□□□□□ -0.67
VPS33A-208ENST00000543633 K7EIM0 57 aa10.85□□□□□ -0.67
VPS33A-208ENST00000543633 MRPS12O15235 138 aaKnown RBP10.85□□□□□ -0.67
VPS33A-208ENST00000543633 VAMP3Q15836 100 aa10.85□□□□□ -0.67
VPS33A-208ENST00000543633 COX8CQ7Z4L0 72 aa10.85□□□□□ -0.67
VPS33A-208ENST00000543633 LHFPL4Q7Z7J7 247 aa10.85□□□□□ -0.67
VPS33A-208ENST00000543633 FBXL15Q9H469 300 aa10.85□□□□□ -0.67
VPS33A-208ENST00000543633 U3KQK5 164 aa10.85□□□□□ -0.67
VPS33A-208ENST00000543633 WI2-2373I1.2A0A1W2PRP0 233 aa10.84□□□□□ -0.67
VPS33A-208ENST00000543633 LY6LH3BQJ8 138 aa10.84□□□□□ -0.67
VPS33A-208ENST00000543633 Q6ZVH6 145 aa10.84□□□□□ -0.67
VPS33A-208ENST00000543633 OR1N2Q8NGR9 330 aa10.84□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms