RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 TLCD2A6NGC4 264 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 TMEM238C9JI98 176 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 C17orf112F2Z3M2 114 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 H7C1C5 153 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 CCL25O15444 150 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 MFSD11O43934 449 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 NDUFC2O95298 119 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 CRHP06850 196 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 OR10J4P0C629 311 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 PHBP35232 272 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 INSL3P51460 131 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 DEFA3P59666 94 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 LCN6P62502 163 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 GNG3P63215 75 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 RPL19P84098 196 aaKnown RBP0.25□□□□□ -2.37
VPS13A-213ENST00000539950 MYL5Q02045 173 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 AKR1C8PQ5T2L2 129 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 HACD4Q5VWC8 232 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 C2orf82Q6UX34 121 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 C4orf22Q6V702 233 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 LINC00322Q6ZN03 302 aaPredicted RBP0.25□□□□□ -2.37
VPS13A-213ENST00000539950 S100A7AQ86SG5 101 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 PSMF1Q92530 271 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 AP3S1Q92572 193 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 DGCR14Q96DF8 476 aaKnown RBP0.25□□□□□ -2.37
VPS13A-213ENST00000539950 MALSU1Q96EH3 234 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 TMEM70Q9BUB7 260 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 C6orf62Q9GZU0 229 aaPredicted RBP0.25□□□□□ -2.37
VPS13A-213ENST00000539950 POPDC3Q9HBV1 291 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 LY96Q9Y6Y9 160 aa0.25□□□□□ -2.37
VPS13A-213ENST00000539950 OBSL1O75147 1896 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 PIK3C2AO00443 1686 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 SYNMO15061 1565 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 KIAA1107Q9UPP5 1409 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 RTL9Q8NET4 1388 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 TRAV10A0A0B4J240 114 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 RIIAD1A6NNX1 92 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 E5RI56 91 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 G3V2T6 193 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 IFNA14P01570 189 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 TRGC2P03986 189 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 CSN2P05814 226 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 CXCL8P10145 99 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 OGNP20774 298 aaKnown RBP0.24□□□□□ -2.37
VPS13A-213ENST00000539950 RAB5CP51148 216 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 GNG5P63218 68 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 PSG9Q00887 426 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 TMEM78Q5T7P6 136 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 FKBP1CQ5VVH2 108 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 C1orf140Q5VVS0 124 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 TEX261Q6UWH6 196 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 ARPINQ7Z6K5 226 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 PRR15Q8IV56 129 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 OR5AS1Q8N127 324 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 Q8N6K4 173 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 ST6GALNAC3Q8NDV1 305 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 PLPP5Q8NEB5 264 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 OR5D16Q8NGK9 328 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 OR10AG1Q8NH19 301 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 CCL4L1Q8NHW4 92 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 HYLS1Q96M11 299 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 AMELYQ99218 206 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 PHB2Q99623 299 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 NPCDR1Q9BY65 106 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 OR2J1Q9GZK6 312 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 CDC42SE1Q9NRR8 79 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 ORMDL1Q9P0S3 153 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 LAMTOR3Q9UHA4 124 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 SMPXQ9UHP9 88 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 PCTPQ9UKL6 214 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 SSR3Q9UNL2 185 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 U3KQ87 197 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 KIAA1549Q9HCM3 1950 aa0.24□□□□□ -2.37
VPS13A-213ENST00000539950 TRAPPC8Q9Y2L5 1435 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 CCDC88AQ3V6T2 1871 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 PLXNA4Q9HCM2 1894 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 NUP98P52948 1817 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 IGLV3-32A0A0A0MS00 114 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 CCDC160A6NGH7 325 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 A6NN06 94 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 PPP5D1E7EU14 171 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 ERC2-IT1O76042 136 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 IGHV3-33P01772 117 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 APOA2P02652 100 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 COX7CP15954 63 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 ZNF25P17030 456 aaPredicted RBP0.23□□□□□ -2.37
VPS13A-213ENST00000539950 NFYBP25208 207 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 S100A5P33763 92 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 CDK6Q00534 326 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 FAM74A1Q5RGS3 127 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 C1orf134Q5TEV5 83 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 EIF5AL1Q6IS14 154 aaKnown RBP0.23□□□□□ -2.37
VPS13A-213ENST00000539950 HAGHLQ6PII5 290 aaPredicted RBP0.23□□□□□ -2.37
VPS13A-213ENST00000539950 LINC00575Q6W349 94 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 SMIM20Q8N5G0 67 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 OR5D14Q8NGL3 314 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 OR2T35Q8NGX2 323 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 OR13C6PQ8NH95 151 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 CDC26Q8NHZ8 85 aa0.23□□□□□ -2.37
VPS13A-213ENST00000539950 Q8TAT8 98 aa0.23□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 102.9 ms