RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 SLC25A6P12236 298 aa6.42□□□□□ -1.38
USP28-205ENST00000537706 Q56UQ5 140 aa6.42□□□□□ -1.38
USP28-205ENST00000537706 ACTL10Q5JWF8 245 aa6.42□□□□□ -1.38
USP28-205ENST00000537706 RNF141Q8WVD5 230 aa6.42□□□□□ -1.38
USP28-205ENST00000537706 TMED6Q8WW62 240 aa6.42□□□□□ -1.38
USP28-205ENST00000537706 GRAMD2BQ96HH9 432 aa6.42□□□□□ -1.38
USP28-205ENST00000537706 TMEM70Q9BUB7 260 aa6.42□□□□□ -1.38
USP28-205ENST00000537706 C11orf1Q9H5F2 150 aa6.42□□□□□ -1.38
USP28-205ENST00000537706 NUPL2O15504 423 aaKnown RBP6.42□□□□□ -1.38
USP28-205ENST00000537706 TNFSF12O43508 249 aa6.42□□□□□ -1.38
USP28-205ENST00000537706 KBTBD11O94819 623 aa6.42□□□□□ -1.38
USP28-205ENST00000537706 IGLV2-14P01704 120 aa6.42□□□□□ -1.38
USP28-205ENST00000537706 PVALBP20472 110 aaPredicted RBP6.42□□□□□ -1.38
USP28-205ENST00000537706 NKX2-1P43699 371 aaPredicted RBP6.42□□□□□ -1.38
USP28-205ENST00000537706 RPL7L1Q6DKI1 246 aaKnown RBP6.42□□□□□ -1.38
USP28-205ENST00000537706 SSX7Q7RTT5 188 aa6.42□□□□□ -1.38
USP28-205ENST00000537706 UBAC2Q8NBM4 344 aa6.42□□□□□ -1.38
USP28-205ENST00000537706 DMBX1Q8NFW5 382 aa6.42□□□□□ -1.38
USP28-205ENST00000537706 FNDC4Q9H6D8 234 aaPredicted RBP6.42□□□□□ -1.38
USP28-205ENST00000537706 C21orf62Q9NYP8 219 aa6.42□□□□□ -1.38
USP28-205ENST00000537706 SERPINE2P07093 398 aa6.41□□□□□ -1.38
USP28-205ENST00000537706 ZBTB34Q8NCN2 500 aa6.41□□□□□ -1.38
USP28-205ENST00000537706 OR51H1Q8NH63 302 aa6.41□□□□□ -1.38
USP28-205ENST00000537706 TMEM167AQ8TBQ9 72 aa6.41□□□□□ -1.38
USP28-205ENST00000537706 LSM10Q969L4 123 aaKnown RBP6.41□□□□□ -1.38
USP28-205ENST00000537706 GPHA2Q96T91 129 aa6.41□□□□□ -1.38
USP28-205ENST00000537706 ARV1Q9H2C2 271 aa6.41□□□□□ -1.38
USP28-205ENST00000537706 XCL2Q9UBD3 114 aa6.41□□□□□ -1.38
USP28-205ENST00000537706 BORCS7-ASMTA0A0B4J1R7 106 aa6.4□□□□□ -1.38
USP28-205ENST00000537706 KRTAP9-6A0A140TA67 174 aa6.4□□□□□ -1.38
USP28-205ENST00000537706 A0A1B0GU03 582 aa6.4□□□□□ -1.38
USP28-205ENST00000537706 FCGR3BO75015 233 aa6.4□□□□□ -1.38
USP28-205ENST00000537706 PRB4P10163 310 aaPredicted RBP6.4□□□□□ -1.38
USP28-205ENST00000537706 DUTP33316 252 aaKnown RBP6.4□□□□□ -1.38
USP28-205ENST00000537706 OR2B8PP59922 312 aa6.4□□□□□ -1.38
USP28-205ENST00000537706 SLC25A24Q6NUK1 477 aa6.4□□□□□ -1.38
USP28-205ENST00000537706 UQCC3Q6UW78 93 aa6.4□□□□□ -1.38
USP28-205ENST00000537706 SAT2Q96F10 170 aaPredicted RBP6.4□□□□□ -1.38
USP28-205ENST00000537706 LINC00052Q96N35 136 aa6.4□□□□□ -1.38
USP28-205ENST00000537706 SRSF8Q9BRL6 282 aaKnown RBP6.4□□□□□ -1.38
USP28-205ENST00000537706 LYRM2Q9NU23 88 aaPredicted RBP6.4□□□□□ -1.38
USP28-205ENST00000537706 FAT1Q14517 4588 aa6.4□□□□□ -1.38
USP28-205ENST00000537706 IGHV3OR16-12A0A075B7B8 117 aa6.4□□□□□ -1.39
USP28-205ENST00000537706 IGHV3OR16-13A0A075B7E8 117 aa6.4□□□□□ -1.39
USP28-205ENST00000537706 IGHV3-74A0A0B4J1X5 117 aa6.4□□□□□ -1.39
USP28-205ENST00000537706 RAB19A4D1S5 217 aa6.4□□□□□ -1.39
USP28-205ENST00000537706 TEX46H3BTG2 121 aa6.4□□□□□ -1.39
USP28-205ENST00000537706 SSSCA1O60232 199 aa6.4□□□□□ -1.39
USP28-205ENST00000537706 PITX3O75364 302 aa6.4□□□□□ -1.39
USP28-205ENST00000537706 FUSP35637 526 aaKnown RBP eCLIP6.4□□□□□ -1.39
USP28-205ENST00000537706 RPL8P62917 257 aaKnown RBP6.4□□□□□ -1.39
USP28-205ENST00000537706 ID3Q02535 119 aa6.4□□□□□ -1.39
USP28-205ENST00000537706 BAXQ07812 192 aa6.4□□□□□ -1.39
USP28-205ENST00000537706 OR1S2Q8NGQ3 325 aa6.4□□□□□ -1.39
USP28-205ENST00000537706 ZNF414Q96IQ9 312 aa6.4□□□□□ -1.39
USP28-205ENST00000537706 SMIM8Q96KF7 97 aa6.4□□□□□ -1.39
USP28-205ENST00000537706 KRTAP9-2Q9BYQ4 174 aa6.4□□□□□ -1.39
USP28-205ENST00000537706 FAM212BQ9NTI7 297 aaPredicted RBP6.4□□□□□ -1.39
USP28-205ENST00000537706 ZNF586Q9NXT0 402 aa6.4□□□□□ -1.39
USP28-205ENST00000537706 F5H768 121 aa6.39□□□□□ -1.39
USP28-205ENST00000537706 IGKV1-39P01597 117 aa6.39□□□□□ -1.39
USP28-205ENST00000537706 HBE1P02100 147 aa6.39□□□□□ -1.39
USP28-205ENST00000537706 IGKV1D-39P04432 117 aa6.39□□□□□ -1.39
USP28-205ENST00000537706 ZNF688P0C7X2 276 aa6.39□□□□□ -1.39
USP28-205ENST00000537706 SULT1A2P50226 295 aa6.39□□□□□ -1.39
USP28-205ENST00000537706 POLR2GP62487 172 aaKnown RBP eCLIP6.39□□□□□ -1.39
USP28-205ENST00000537706 VAMP2P63027 116 aa6.39□□□□□ -1.39
USP28-205ENST00000537706 CATR1Q13166 79 aa6.39□□□□□ -1.39
USP28-205ENST00000537706 EIF4EBP1Q13541 118 aaPredicted RBP6.39□□□□□ -1.39
USP28-205ENST00000537706 FAM24BQ8N5W8 94 aa6.39□□□□□ -1.39
USP28-205ENST00000537706 STXBP6Q8NFX7 210 aa6.39□□□□□ -1.39
USP28-205ENST00000537706 OR4S2Q8NH73 311 aa6.39□□□□□ -1.39
USP28-205ENST00000537706 RNASE11Q8TAA1 199 aaKnown RBP6.39□□□□□ -1.39
USP28-205ENST00000537706 AIFM2Q9BRQ8 373 aa6.39□□□□□ -1.39
USP28-205ENST00000537706 SMIM3Q9BZL3 60 aa6.39□□□□□ -1.39
USP28-205ENST00000537706 SLC25A31Q9H0C2 315 aa6.39□□□□□ -1.39
USP28-205ENST00000537706 A0A0G2JRQ6 117 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 A0A1W2PS18 150 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 IGSF23A1L1A6 192 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 WRBO00258 174 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 SEC11BP0C7V7 166 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 HOXA1P49639 335 aaPredicted RBP6.38□□□□□ -1.39
USP28-205ENST00000537706 CAV2P51636 162 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 AKR1C2P52895 323 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 HAMPP81172 84 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 ZNF266Q14584 549 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 ZNF705AQ6ZN79 300 aaPredicted RBP6.38□□□□□ -1.39
USP28-205ENST00000537706 GPR146Q96CH1 333 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 C5orf30Q96GV9 206 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 ZNF705FA8MVS1 300 aaPredicted RBP6.38□□□□□ -1.39
USP28-205ENST00000537706 E7EUB6 86 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 MED6O75586 246 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 HRASP01112 189 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 IGKV1-5P01602 117 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 ZNF705DP0CH99 300 aaPredicted RBP6.38□□□□□ -1.39
USP28-205ENST00000537706 ZNF705BP0CI00 300 aaPredicted RBP6.38□□□□□ -1.39
USP28-205ENST00000537706 LINC00315P59091 139 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 BLOC1S1P78537 153 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 PXDC1Q5TGL8 231 aa6.38□□□□□ -1.39
USP28-205ENST00000537706 NFE4Q86UQ8 179 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 97.1 ms