RNA–Protein interactions for RNA: ENST00000513352.1

NUP54-213, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 579 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-213ENST00000513352 C1orf194Q5T5A4 169 aa11.26□□□□□ -0.61
NUP54-213ENST00000513352 GATAD1Q8WUU5 269 aa11.26□□□□□ -0.61
NUP54-213ENST00000513352 SLC25A32Q9H2D1 315 aa11.26□□□□□ -0.61
NUP54-213ENST00000513352 RNF24Q9Y225 148 aa11.26□□□□□ -0.61
NUP54-213ENST00000513352 TSPAN4O14817 238 aa11.25□□□□□ -0.61
NUP54-213ENST00000513352 C4BPBP20851 252 aa11.25□□□□□ -0.61
NUP54-213ENST00000513352 EIF5AP63241 154 aaKnown RBP11.25□□□□□ -0.61
NUP54-213ENST00000513352 FAM78BQ5VT40 261 aa11.25□□□□□ -0.61
NUP54-213ENST00000513352 FAM90A2PQ658T7 463 aa11.25□□□□□ -0.61
NUP54-213ENST00000513352 GTSCR1Q86UQ5 136 aa11.25□□□□□ -0.61
NUP54-213ENST00000513352 OR2G3Q8NGZ4 309 aa11.25□□□□□ -0.61
NUP54-213ENST00000513352 SPAG8Q99932 426 aaPredicted RBP11.25□□□□□ -0.61
NUP54-213ENST00000513352 PSMG3Q9BT73 122 aaPredicted RBP11.25□□□□□ -0.61
NUP54-213ENST00000513352 NOTCH1P46531 2555 aa11.24□□□□□ -0.61
NUP54-213ENST00000513352 OR4C46A6NHA9 309 aa11.24□□□□□ -0.61
NUP54-213ENST00000513352 ZNF785A8K8V0 405 aa11.24□□□□□ -0.61
NUP54-213ENST00000513352 ATF4P18848 351 aaPredicted RBP11.24□□□□□ -0.61
NUP54-213ENST00000513352 M6PRP20645 277 aa11.24□□□□□ -0.61
NUP54-213ENST00000513352 RAB2AP61019 212 aa11.24□□□□□ -0.61
NUP54-213ENST00000513352 KPRPQ5T749 579 aaPredicted RBP11.24□□□□□ -0.61
NUP54-213ENST00000513352 MORN5Q5VZ52 161 aa11.24□□□□□ -0.61
NUP54-213ENST00000513352 SPATA31B1PQ5VZV4 182 aa11.24□□□□□ -0.61
NUP54-213ENST00000513352 FAM122CQ6P4D5 195 aa11.24□□□□□ -0.61
NUP54-213ENST00000513352 C9orf62Q8N4C0 152 aa11.24□□□□□ -0.61
NUP54-213ENST00000513352 GPR82Q96P67 336 aa11.24□□□□□ -0.61
NUP54-213ENST00000513352 MS4A6AQ9H2W1 248 aa11.24□□□□□ -0.61
NUP54-213ENST00000513352 CMYA5Q8N3K9 4069 aa11.23□□□□□ -0.61
NUP54-213ENST00000513352 TRAV5A0A0B4J249 113 aa11.23□□□□□ -0.61
NUP54-213ENST00000513352 A0A1W2PPV4 95 aa11.23□□□□□ -0.61
NUP54-213ENST00000513352 RPL7P18124 248 aaKnown RBP11.23□□□□□ -0.61
NUP54-213ENST00000513352 CD81P60033 236 aa11.23□□□□□ -0.61
NUP54-213ENST00000513352 RHOBP62745 196 aa11.23□□□□□ -0.61
NUP54-213ENST00000513352 AKR1C8PQ5T2L2 129 aa11.23□□□□□ -0.61
NUP54-213ENST00000513352 MIR17HGQ75NE6 70 aa11.23□□□□□ -0.61
NUP54-213ENST00000513352 OR10G4Q8NGN3 311 aa11.23□□□□□ -0.61
NUP54-213ENST00000513352 OR10G9Q8NGN4 311 aa11.23□□□□□ -0.61
NUP54-213ENST00000513352 OR10G7Q8NGN6 311 aa11.23□□□□□ -0.61
NUP54-213ENST00000513352 MRPL32Q9BYC8 188 aaKnown RBP11.23□□□□□ -0.61
NUP54-213ENST00000513352 MBP02144 154 aa11.22□□□□□ -0.61
NUP54-213ENST00000513352 TPT1P13693 172 aaKnown RBP11.22□□□□□ -0.61
NUP54-213ENST00000513352 SERF2P84101 59 aa11.22□□□□□ -0.61
NUP54-213ENST00000513352 BPIFA4PQ86YQ2 179 aa11.22□□□□□ -0.61
NUP54-213ENST00000513352 SEPSECSQ9HD40 501 aaKnown RBP11.22□□□□□ -0.61
NUP54-213ENST00000513352 NRN1Q9NPD7 142 aa11.22□□□□□ -0.61
NUP54-213ENST00000513352 AURKAIP1Q9NWT8 199 aaPredicted RBP11.22□□□□□ -0.61
NUP54-213ENST00000513352 FUT9Q9Y231 359 aa11.22□□□□□ -0.61
NUP54-213ENST00000513352 BOLA2-SMG1P6H3BVE0 249 aa11.21□□□□□ -0.61
NUP54-213ENST00000513352 SNRPCP09234 159 aaKnown RBP11.21□□□□□ -0.61
NUP54-213ENST00000513352 CD7P09564 240 aa11.21□□□□□ -0.61
NUP54-213ENST00000513352 TMEM41BQ5BJD5 291 aa11.21□□□□□ -0.61
NUP54-213ENST00000513352 BAP18Q8IXM2 172 aa11.21□□□□□ -0.61
NUP54-213ENST00000513352 UBQLN2Q9UHD9 624 aa11.21□□□□□ -0.61
NUP54-213ENST00000513352 NBEAL1Q6ZS30 2694 aa11.2□□□□□ -0.62
NUP54-213ENST00000513352 OR7C2O60412 319 aa11.2□□□□□ -0.62
NUP54-213ENST00000513352 EIF3GO75821 320 aaKnown RBP eCLIP11.2□□□□□ -0.62
NUP54-213ENST00000513352 SPP1P10451 314 aa11.2□□□□□ -0.62
NUP54-213ENST00000513352 CDC34P49427 236 aaPredicted RBP11.2□□□□□ -0.62
NUP54-213ENST00000513352 TAS2R45P59539 299 aa11.2□□□□□ -0.62
NUP54-213ENST00000513352 SLC51BQ86UW2 128 aa11.2□□□□□ -0.62
NUP54-213ENST00000513352 LRRC20Q8TCA0 184 aa11.2□□□□□ -0.62
NUP54-213ENST00000513352 SLC25A2Q9BXI2 301 aa11.2□□□□□ -0.62
NUP54-213ENST00000513352 SMAD5-AS1Q9Y6J3 95 aa11.2□□□□□ -0.62
NUP54-213ENST00000513352 TRAV2A0A0B4J234 112 aa11.19□□□□□ -0.62
NUP54-213ENST00000513352 H3BTX0 84 aa11.19□□□□□ -0.62
NUP54-213ENST00000513352 K7EQG2 157 aa11.19□□□□□ -0.62
NUP54-213ENST00000513352 HMGB3O15347 200 aaKnown RBP11.19□□□□□ -0.62
NUP54-213ENST00000513352 ZNF688P0C7X2 276 aa11.19□□□□□ -0.62
NUP54-213ENST00000513352 PYYP10082 97 aa11.19□□□□□ -0.62
NUP54-213ENST00000513352 MEOX2P50222 304 aa11.19□□□□□ -0.62
NUP54-213ENST00000513352 DEFA6Q01524 100 aa11.19□□□□□ -0.62
NUP54-213ENST00000513352 KHDC3LQ587J8 217 aa11.19□□□□□ -0.62
NUP54-213ENST00000513352 STOML3Q8TAV4 291 aa11.19□□□□□ -0.62
NUP54-213ENST00000513352 TMED6Q8WW62 240 aa11.19□□□□□ -0.62
NUP54-213ENST00000513352 C16orf92Q96LL3 132 aa11.19□□□□□ -0.62
NUP54-213ENST00000513352 OR11H12B2RN74 326 aa11.18□□□□□ -0.62
NUP54-213ENST00000513352 SEC11BP0C7V7 166 aa11.18□□□□□ -0.62
NUP54-213ENST00000513352 ID1P41134 155 aa11.18□□□□□ -0.62
NUP54-213ENST00000513352 SNRPD3P62318 126 aaKnown RBP11.18□□□□□ -0.62
NUP54-213ENST00000513352 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.18□□□□□ -0.62
NUP54-213ENST00000513352 FAM24BQ8N5W8 94 aa11.18□□□□□ -0.62
NUP54-213ENST00000513352 DCANP1Q8TF63 244 aa11.18□□□□□ -0.62
NUP54-213ENST00000513352 PAXXQ9BUH6 204 aa11.18□□□□□ -0.62
NUP54-213ENST00000513352 ACTR3CQ9C0K3 210 aaPredicted RBP11.18□□□□□ -0.62
NUP54-213ENST00000513352 WFDC10AQ9H1F0 79 aa11.18□□□□□ -0.62
NUP54-213ENST00000513352 OR51M1Q9H341 326 aa11.18□□□□□ -0.62
NUP54-213ENST00000513352 RPRMQ9NS64 109 aa11.18□□□□□ -0.62
NUP54-213ENST00000513352 A0A087X0K7 114 aa11.17□□□□□ -0.62
NUP54-213ENST00000513352 MRPS12O15235 138 aaKnown RBP11.17□□□□□ -0.62
NUP54-213ENST00000513352 OR10J4P0C629 311 aa11.17□□□□□ -0.62
NUP54-213ENST00000513352 DEFB131AP59861 70 aa11.17□□□□□ -0.62
NUP54-213ENST00000513352 UBE2L3P68036 154 aaKnown RBP11.17□□□□□ -0.62
NUP54-213ENST00000513352 PSMG4Q5JS54 123 aa11.17□□□□□ -0.62
NUP54-213ENST00000513352 EIF5AL1Q6IS14 154 aaKnown RBP11.17□□□□□ -0.62
NUP54-213ENST00000513352 IQCF2Q8IXL9 164 aa11.17□□□□□ -0.62
NUP54-213ENST00000513352 RPP25LQ8N5L8 163 aaKnown RBP11.17□□□□□ -0.62
NUP54-213ENST00000513352 DEFB125Q8N687 156 aa11.17□□□□□ -0.62
NUP54-213ENST00000513352 BLNKQ8WV28 456 aa11.17□□□□□ -0.62
NUP54-213ENST00000513352 FAM167A-AS1Q96KT0 104 aa11.17□□□□□ -0.62
NUP54-213ENST00000513352 LINC00052Q96N35 136 aa11.17□□□□□ -0.62
NUP54-213ENST00000513352 TUBA4BQ9H853 241 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 98.2 ms