RNA–Protein interactions for RNA: ENST00000504120.3

PCDHA1-203, Transcript of protocadherin alpha 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA1, Length 5,263 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-203ENST00000504120 MORN3Q6PF18 240 aaPredicted RBP13.44□□□□□ -0.26
PCDHA1-203ENST00000504120 BRD3OSQ6XYD6 125 aa13.44□□□□□ -0.26
PCDHA1-203ENST00000504120 NSUN5P1Q3KNT7 163 aa13.44□□□□□ -0.26
PCDHA1-203ENST00000504120 CNOT1A5YKK6 2376 aaKnown RBP13.44□□□□□ -0.26
PCDHA1-203ENST00000504120 TRAV8-2A0A0B4J237 113 aa13.44□□□□□ -0.26
PCDHA1-203ENST00000504120 PGPEP1Q9NXJ5 209 aa13.44□□□□□ -0.26
PCDHA1-203ENST00000504120 MRPL27Q9P0M9 148 aaKnown RBP13.44□□□□□ -0.26
PCDHA1-203ENST00000504120 EP300Q09472 2414 aaPredicted RBP13.44□□□□□ -0.26
PCDHA1-203ENST00000504120 PRB4P10163 310 aaPredicted RBP13.43□□□□□ -0.26
PCDHA1-203ENST00000504120 PRADC1Q9BSG0 188 aa13.43□□□□□ -0.26
PCDHA1-203ENST00000504120 IGHV4-39P01824 125 aa13.43□□□□□ -0.26
PCDHA1-203ENST00000504120 LMO1P25800 156 aa13.43□□□□□ -0.26
PCDHA1-203ENST00000504120 SAP30O75446 220 aa13.43□□□□□ -0.26
PCDHA1-203ENST00000504120 IGKV1-16P04430 117 aa13.43□□□□□ -0.26
PCDHA1-203ENST00000504120 ZNF688P0C7X2 276 aa13.43□□□□□ -0.26
PCDHA1-203ENST00000504120 C1orf194Q5T5A4 169 aa13.43□□□□□ -0.26
PCDHA1-203ENST00000504120 ZNF329Q86UD4 541 aa13.43□□□□□ -0.26
PCDHA1-203ENST00000504120 CRPP02741 224 aa13.43□□□□□ -0.26
PCDHA1-203ENST00000504120 ZNF479Q96JC4 524 aa13.43□□□□□ -0.26
PCDHA1-203ENST00000504120 SFTA2Q6UW10 78 aa13.42□□□□□ -0.26
PCDHA1-203ENST00000504120 OR2K2Q8NGT1 345 aa13.42□□□□□ -0.26
PCDHA1-203ENST00000504120 NDPQ00604 133 aa13.42□□□□□ -0.26
PCDHA1-203ENST00000504120 ZNF415Q09FC8 603 aa13.42□□□□□ -0.26
PCDHA1-203ENST00000504120 C3orf36Q3SXR2 165 aa13.42□□□□□ -0.26
PCDHA1-203ENST00000504120 TMEM86BQ8N661 226 aa13.42□□□□□ -0.26
PCDHA1-203ENST00000504120 FRMPD3Q5JV73 1810 aa13.42□□□□□ -0.26
PCDHA1-203ENST00000504120 IGKV1-6A0A0C4DH72 117 aa13.42□□□□□ -0.26
PCDHA1-203ENST00000504120 TMEM238C9JI98 176 aa13.42□□□□□ -0.26
PCDHA1-203ENST00000504120 E7EQL1 145 aa13.42□□□□□ -0.26
PCDHA1-203ENST00000504120 ZNF876PQ49A33 203 aa13.42□□□□□ -0.26
PCDHA1-203ENST00000504120 Q8TAT8 98 aa13.42□□□□□ -0.26
PCDHA1-203ENST00000504120 VCYO14598 125 aa13.42□□□□□ -0.26
PCDHA1-203ENST00000504120 PDE6HQ13956 83 aa13.41□□□□□ -0.26
PCDHA1-203ENST00000504120 FAM90A2PQ658T7 463 aa13.41□□□□□ -0.26
PCDHA1-203ENST00000504120 SHANK2-AS3Q9BTD1 123 aa13.41□□□□□ -0.26
PCDHA1-203ENST00000504120 CRIM1Q9NZV1 1036 aa13.41□□□□□ -0.26
PCDHA1-203ENST00000504120 SLC25A16P16260 332 aa13.41□□□□□ -0.26
PCDHA1-203ENST00000504120 TMEM256Q8N2U0 113 aa13.41□□□□□ -0.26
PCDHA1-203ENST00000504120 ANAPC10Q9UM13 185 aa13.41□□□□□ -0.26
PCDHA1-203ENST00000504120 PIP4P2Q8N4L2 257 aa13.41□□□□□ -0.26
PCDHA1-203ENST00000504120 HS3ST6Q96QI5 342 aa13.41□□□□□ -0.26
PCDHA1-203ENST00000504120 RPL36AP83881 106 aaKnown RBP13.41□□□□□ -0.26
PCDHA1-203ENST00000504120 RPL36ALQ969Q0 106 aaKnown RBP13.41□□□□□ -0.26
PCDHA1-203ENST00000504120 PLEKHB2Q96CS7 222 aa13.41□□□□□ -0.26
PCDHA1-203ENST00000504120 INTS1Q8N201 2190 aaKnown RBP13.4□□□□□ -0.26
PCDHA1-203ENST00000504120 TRAV12-3A0A0B4J271 114 aa13.4□□□□□ -0.26
PCDHA1-203ENST00000504120 TMEM95Q3KNT9 176 aa13.4□□□□□ -0.26
PCDHA1-203ENST00000504120 Q8TCH9 128 aa13.4□□□□□ -0.26
PCDHA1-203ENST00000504120 GFRA4Q9GZZ7 299 aa13.4□□□□□ -0.26
PCDHA1-203ENST00000504120 MEGF9Q9H1U4 602 aa13.4□□□□□ -0.26
PCDHA1-203ENST00000504120 NCOR1P1Q9H4R4 102 aa13.4□□□□□ -0.26
PCDHA1-203ENST00000504120 Q86TA4 180 aa13.4□□□□□ -0.26
PCDHA1-203ENST00000504120 DTX1Q86Y01 620 aa13.4□□□□□ -0.26
PCDHA1-203ENST00000504120 FCN3O75636 299 aa13.4□□□□□ -0.26
PCDHA1-203ENST00000504120 GATA4P43694 442 aa13.4□□□□□ -0.26
PCDHA1-203ENST00000504120 SAMD5Q5TGI4 173 aa13.4□□□□□ -0.26
PCDHA1-203ENST00000504120 ERG28Q9UKR5 140 aa13.4□□□□□ -0.26
PCDHA1-203ENST00000504120 TRAV8-1A0A0A6YYK1 113 aa13.4□□□□□ -0.27
PCDHA1-203ENST00000504120 SAA4P35542 130 aa13.4□□□□□ -0.27
PCDHA1-203ENST00000504120 UNQ6494/PRO21346Q6UXR6 183 aa13.4□□□□□ -0.27
PCDHA1-203ENST00000504120 TRAV16A0A0A6YYK6 109 aaPredicted RBP13.39□□□□□ -0.27
PCDHA1-203ENST00000504120 A0A1W2PPI3 338 aa13.39□□□□□ -0.27
PCDHA1-203ENST00000504120 MLANAQ16655 118 aa13.39□□□□□ -0.27
PCDHA1-203ENST00000504120 RHPN1-AS1Q9BWJ2 59 aa13.39□□□□□ -0.27
PCDHA1-203ENST00000504120 BPESC1Q9GZL8 116 aa13.39□□□□□ -0.27
PCDHA1-203ENST00000504120 A8MWV9 139 aa13.39□□□□□ -0.27
PCDHA1-203ENST00000504120 ZNF562Q6V9R5 426 aa13.39□□□□□ -0.27
PCDHA1-203ENST00000504120 IGHV3-64A0A075B6Q5 118 aa13.39□□□□□ -0.27
PCDHA1-203ENST00000504120 C3orf79P0CE67 100 aa13.39□□□□□ -0.27
PCDHA1-203ENST00000504120 M0R2P5 195 aa13.38□□□□□ -0.27
PCDHA1-203ENST00000504120 TMEM14BQ9NUH8 114 aa13.38□□□□□ -0.27
PCDHA1-203ENST00000504120 NDUFS8O00217 210 aa13.38□□□□□ -0.27
PCDHA1-203ENST00000504120 TEX43Q6ZNM6 134 aa13.38□□□□□ -0.27
PCDHA1-203ENST00000504120 MSRB2Q9Y3D2 182 aa13.38□□□□□ -0.27
PCDHA1-203ENST00000504120 SELENOKQ9Y6D0 94 aa13.38□□□□□ -0.27
PCDHA1-203ENST00000504120 MED12Q93074 2177 aa13.38□□□□□ -0.27
PCDHA1-203ENST00000504120 LINC00158P58513 81 aa13.38□□□□□ -0.27
PCDHA1-203ENST00000504120 GUSBP1Q15486 140 aa13.38□□□□□ -0.27
PCDHA1-203ENST00000504120 LINC01356Q8N9X3 169 aa13.38□□□□□ -0.27
PCDHA1-203ENST00000504120 DAZ1Q9NQZ3 744 aaKnown RBP13.38□□□□□ -0.27
PCDHA1-203ENST00000504120 ANAPC1Q9H1A4 1944 aa13.38□□□□□ -0.27
PCDHA1-203ENST00000504120 ADCYAP1P18509 176 aa13.37□□□□□ -0.27
PCDHA1-203ENST00000504120 TMEM249Q2WGJ8 235 aa13.37□□□□□ -0.27
PCDHA1-203ENST00000504120 C1orf147Q96MC9 270 aaPredicted RBP13.37□□□□□ -0.27
PCDHA1-203ENST00000504120 AKAP6Q13023 2319 aa13.37□□□□□ -0.27
PCDHA1-203ENST00000504120 DMRTC2Q8IXT2 367 aaPredicted RBP13.37□□□□□ -0.27
PCDHA1-203ENST00000504120 A0A087WX48 190 aa13.37□□□□□ -0.27
PCDHA1-203ENST00000504120 TRGV1A0A0A0MS02 117 aa13.37□□□□□ -0.27
PCDHA1-203ENST00000504120 SYS1-DBNDD2H3BUS1 97 aa13.37□□□□□ -0.27
PCDHA1-203ENST00000504120 LY6HO94772 140 aa13.37□□□□□ -0.27
PCDHA1-203ENST00000504120 PROK2Q9HC23 129 aa13.37□□□□□ -0.27
PCDHA1-203ENST00000504120 ATXN8Q156A1 80 aa13.37□□□□□ -0.27
PCDHA1-203ENST00000504120 GAGE13Q4V321 117 aa13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 IGFL4Q6B9Z1 124 aa13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 C14orf178Q8N769 122 aaPredicted RBP13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 CSTL1Q9H114 145 aa13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 INSP01308 110 aa13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 MST1LQ2TV78 715 aa13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 BCL6BQ8N143 479 aaPredicted RBP13.36□□□□□ -0.27
PCDHA1-203ENST00000504120 C1QTNF4Q9BXJ3 329 aa13.36□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 69.9 ms