RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 BLNKQ8WV28 456 aa12.84□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 SGK494Q96LW2 274 aa12.84□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 DYNLRB1Q9NP97 96 aa12.84□□□□□ -0.35
MSH5-SAPCD1-208ENST00000498473 MALRD1Q5VYJ5 2156 aa12.83□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 PGPA6NDG6 321 aa12.83□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 SLC25A5P05141 298 aaKnown RBP12.83□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 APELAP0DMC3 54 aa12.83□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 RPL27AP46776 148 aaKnown RBP12.83□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 PRB3Q04118 309 aaPredicted RBP12.83□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 TNXAQ16473 311 aa12.83□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 STXBP6Q8NFX7 210 aa12.83□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 MRPL27Q9P0M9 148 aaKnown RBP12.83□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 LAMTOR2Q9Y2Q5 125 aa12.83□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 IGHV3-21A0A0B4J1V1 117 aa12.82□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 VSTM5A8MXK1 200 aa12.82□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 IGLV1-47P01700 117 aa12.82□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 C3orf79P0CE67 100 aa12.82□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 SSX8Q7RTT4 187 aa12.82□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 VKORC1Q9BQB6 163 aa12.82□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 MLST8Q9BVC4 326 aa12.82□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 SIGLEC9Q9Y336 463 aa12.82□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 IGHV2-26A0A0B4J1V2 119 aa12.82□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 IGHV1-69-2A0A0G2JMI3 117 aa12.82□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 GP9P14770 177 aa12.82□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 PRRX1P54821 245 aa12.82□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 LINC00322Q6ZN03 302 aaPredicted RBP12.82□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 CST9LQ9H4G1 147 aa12.82□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 UQCR10Q9UDW1 63 aa12.82□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 HIGD1CA8MV81 97 aa12.81□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 M0QZ24 198 aa12.81□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 HIST1H1EP10412 219 aaKnown RBP12.81□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 UBE2G1P62253 170 aa12.81□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 PAX2Q02962 417 aa12.81□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 KLF5Q13887 457 aaPredicted RBP12.81□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 CHRDL1Q9BU40 450 aa12.81□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 A0A1B0GXF2 115 aa12.81□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 TEX22C9J3V5 150 aa12.81□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 HYPMO75409 117 aa12.81□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 OR2J3O76001 311 aa12.81□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 S100A7P31151 101 aa12.81□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 PLP1P60201 277 aa12.81□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 GPR82Q96P67 336 aa12.81□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 IGHV1-3A0A0C4DH29 117 aa12.8□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 K7ERU9 68 aa12.8□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 SSBP4Q9BWG4 385 aaPredicted RBP12.8□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 GPR6P46095 362 aaPredicted RBP12.8□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 RHOGP84095 191 aa12.8□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 C8orf46Q8TAG6 207 aa12.8□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 PRSS22Q9GZN4 317 aa12.8□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 F11RQ9Y624 299 aaKnown RBP12.8□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 LYNX1G3V0Z9 82 aa12.79□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 BUB1B-PAK6H3BSN5 160 aa12.79□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 H3BTX0 84 aa12.79□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 LYNX1P0DP58 116 aa12.79□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 C19orf71A6NCJ1 209 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 LTAP01374 205 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 NTF3P20783 257 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 CAMPP49913 170 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 TMEM95Q3KNT9 176 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 SPATA45Q537H7 98 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 LDLRAD2Q5SZI1 272 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 TCF24Q7RTU0 167 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 ATP5L2Q7Z4Y8 100 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 C5orf17Q8NAS9 161 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 Q9H3A6 140 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 INSIG2Q9Y5U4 225 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 SVEP1Q4LDE5 3571 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 SPG11Q96JI7 2443 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 TCRAP04437 139 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 PPP1R27Q86WC6 154 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 RPP21Q9H633 154 aaKnown RBP12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 NGBQ9NPG2 151 aa12.78□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 SRSF1Q07955 248 aaKnown RBP eCLIP12.77□□□□□ -0.366e-9■■■□□ 17.1
MSH5-SAPCD1-208ENST00000498473 GTSF1Q8WW33 167 aa12.77□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 FMC1Q96HJ9 113 aa12.77□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 CLUHP3Q96NS8 147 aa12.77□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 CLEC7AQ9BXN2 247 aa12.77□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 FBXL15Q9H469 300 aa12.77□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 MRPS16Q9Y3D3 137 aaKnown RBP12.77□□□□□ -0.36
MSH5-SAPCD1-208ENST00000498473 POLQO75417 2590 aa12.77□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 IGLC1P0CG04 106 aa12.77□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 HNRNPA3P51991 378 aaKnown RBP12.77□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 PRR31Q5SQ13 230 aa12.77□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 LINC01560Q8TB33 94 aa12.77□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 URB1-AS1Q96HZ7 61 aa12.77□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 ZNF492Q9P255 531 aa12.77□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 HECTD1Q9ULT8 2610 aa12.77□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 ABCA12Q86UK0 2595 aa12.77□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 B9A039 149 aa12.76□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 PSG1P11464 419 aa12.76□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 PRSS57Q6UWY2 283 aa12.76□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 BORCS7Q96B45 105 aa12.76□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 WNT10AQ9GZT5 417 aa12.76□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 ABCA1O95477 2261 aa12.76□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.76□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 A1L4Q6 167 aa12.76□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 C19orf84I3L1E1 186 aa12.76□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 I3L2K1 104 aa12.76□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 IGLC2P0DOY2 106 aa12.76□□□□□ -0.37
MSH5-SAPCD1-208ENST00000498473 IGLC3P0DOY3 106 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 133 ms