RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 DOPEY1Q5JWR5 2465 aa8.77□□□□□ -1
MSH5-SAPCD1-207ENST00000493662 FOXI3A8MTJ6 420 aaPredicted RBP8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 SYS1-DBNDD2H3BUS1 97 aa8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 OR2J3O76001 311 aa8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 PRB1P04280 392 aa8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 DUTP33316 252 aaKnown RBP8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 LYZP61626 148 aa8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 PAXXQ9BUH6 204 aa8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 GEMIN7Q9H840 131 aaKnown RBP8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 MRPL27Q9P0M9 148 aaKnown RBP8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 JPT1Q9UK76 154 aa8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 ECSCRQ19T08 205 aa8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 LYRM7Q5U5X0 104 aa8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 J3QW42 95 aa8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 APOHP02749 345 aaPredicted RBP8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 KHDC1LQ5JSQ8 128 aa8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 LINC00527Q9UJ94 153 aa8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 WDR83OSQ9Y284 106 aa8.77□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 WNT2P09544 360 aa8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 C8orf88P0DMB2 117 aa8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 TMEM14EPQ6UXP3 125 aa8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 Q8NA96 180 aa8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 MAPK1IP1LQ8NDC0 245 aa8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 C18orf32Q8TCD1 76 aa8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 GRAMD2BQ96HH9 432 aa8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 SH2D7A6NKC9 451 aaPredicted RBP8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 RPS20P60866 119 aaKnown RBP8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 MBNL2Q5VZF2 373 aaKnown RBP8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 MIR17HGQ75NE6 70 aa8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 DEFB125Q8N687 156 aa8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 WFDC12Q8WWY7 111 aa8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 ZC2HC1AQ96GY0 325 aa8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 HIST1H4GQ99525 98 aa8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 VKORC1Q9BQB6 163 aa8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 HIF1ANQ9NWT6 349 aa8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 FN1P02751 2386 aaKnown RBP8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 SCGB1D4Q6XE38 83 aa8.76□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 IGHV3-49A0A0A0MS15 119 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 SRSF9Q13242 221 aaKnown RBP eCLIP8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 LY6EQ16553 131 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 TMEM200BQ69YZ2 307 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 IGFL3Q6UXB1 125 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 ADAMTSL5Q6ZMM2 481 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 TCF24Q7RTU0 167 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 NPIPB3Q92617 1050 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 ZNF414Q96IQ9 312 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 TMSB15BA0A087X1C1 80 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 TRAV8-6A0A0B4J262 113 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 PGPA6NDG6 321 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 ERVK11-1P61568 191 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 PSG3Q16557 428 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 C10orf113Q5VZT2 155 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 SAA1P0DJI8 122 aaPredicted RBP8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 PAX1P15863 534 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 IGFBP2P18065 325 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 MC5RP33032 325 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 GUSBP1Q15486 140 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 Q1RN00 199 aa8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 ZNF672Q499Z4 452 aaPredicted RBP8.75□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 B9A039 149 aa8.74□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 KLF17Q5JT82 389 aaPredicted RBP8.74□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 IGFL2Q6UWQ7 119 aa8.74□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 OR4X2Q8NGF9 303 aa8.74□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 LRBAP50851 2863 aa8.74□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 C9JCJ5 164 aa8.74□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 J3KRW8 73 aa8.74□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 HSPE1P61604 102 aaKnown RBP8.74□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 GAFA1Q96PS6 74 aa8.74□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 TAX1BP3O14907 124 aa8.74□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 HECTD1Q9ULT8 2610 aa8.74□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 C9orf118A6NHY6 69 aa8.73□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 EFNB3Q15768 340 aa8.73□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 TMEM144Q7Z5S9 345 aa8.73□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 OR1L8Q8NGR8 309 aa8.73□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 ZNF418Q8TF45 676 aaPredicted RBP8.73□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 CPAMD8Q8IZJ3 1885 aa8.73□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 GAGE12HA6NDE8 117 aa8.73□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.73□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 IGLV1-44P01699 117 aa8.73□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 SPATA31B1PQ5VZV4 182 aa8.73□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 CLUHP3Q96NS8 147 aa8.73□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 CYSLTR1Q9Y271 337 aa8.73□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 TMEM178BH3BS89 294 aa8.73□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 WFDC3Q8IUB2 231 aa8.73□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 OR9G1Q8NH87 305 aa8.73□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 C18orf15Q96N68 181 aa8.73□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 THBDP07204 575 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 ZNF138P52744 262 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 ATP5J2P56134 94 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 ASPHD1Q5U4P2 390 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 PRNTQ86SH4 94 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 FAM222BQ8WU58 562 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 PRNDQ9UKY0 176 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 K7EP34 96 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 APOMO95445 188 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 PSMB2P49721 201 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 ETDBQ3ZM63 59 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 CD300EQ496F6 205 aaPredicted RBP8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 GAGE13Q4V321 117 aa8.72□□□□□ -1.01
MSH5-SAPCD1-207ENST00000493662 CHCHD1Q96BP2 118 aaKnown RBP8.72□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 148.9 ms