RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 S100A7AQ86SG5 101 aa8.84□□□□□ -0.99
VPS52-213ENST00000461743 SBSPONQ8IVN8 264 aa8.84□□□□□ -0.99
VPS52-213ENST00000461743 DEFB125Q8N687 156 aa8.84□□□□□ -0.99
VPS52-213ENST00000461743 SPATA25Q9BR10 227 aa8.84□□□□□ -0.99
VPS52-213ENST00000461743 PBDC1Q9BVG4 233 aa8.84□□□□□ -0.99
VPS52-213ENST00000461743 WFDC10AQ9H1F0 79 aa8.84□□□□□ -0.99
VPS52-213ENST00000461743 MS4A6AQ9H2W1 248 aa8.84□□□□□ -0.99
VPS52-213ENST00000461743 SEPSECSQ9HD40 501 aaKnown RBP8.84□□□□□ -0.99
VPS52-213ENST00000461743 SELENOKQ9Y6D0 94 aa8.84□□□□□ -0.99
VPS52-213ENST00000461743 KANTRA0A1W2PQU2 76 aa8.83□□□□□ -1
VPS52-213ENST00000461743 E5RGE8 158 aa8.83□□□□□ -1
VPS52-213ENST00000461743 S100A8P05109 93 aa8.83□□□□□ -1
VPS52-213ENST00000461743 H2BFSP57053 126 aa8.83□□□□□ -1
VPS52-213ENST00000461743 PLP1P60201 277 aa8.83□□□□□ -1
VPS52-213ENST00000461743 VWC2Q2TAL6 325 aa8.83□□□□□ -1
VPS52-213ENST00000461743 SIGLEC15Q6ZMC9 328 aa8.83□□□□□ -1
VPS52-213ENST00000461743 CYP2G1PQ6ZSU1 146 aa8.83□□□□□ -1
VPS52-213ENST00000461743 ZNF546Q86UE3 836 aa8.83□□□□□ -1
VPS52-213ENST00000461743 GGTLC1Q9BX51 225 aa8.83□□□□□ -1
VPS52-213ENST00000461743 RNF24Q9Y225 148 aa8.83□□□□□ -1
VPS52-213ENST00000461743 U3KQK5 164 aa8.83□□□□□ -1
VPS52-213ENST00000461743 LOC102724200A0A096LPH7 203 aaPredicted RBP8.82□□□□□ -1
VPS52-213ENST00000461743 IGHV3-66A0A0C4DH42 116 aa8.82□□□□□ -1
VPS52-213ENST00000461743 TMEM218A2RU14 115 aa8.82□□□□□ -1
VPS52-213ENST00000461743 K7EQG2 157 aa8.82□□□□□ -1
VPS52-213ENST00000461743 RPL11P62913 178 aaKnown RBP8.82□□□□□ -1
VPS52-213ENST00000461743 BAXQ07812 192 aa8.82□□□□□ -1
VPS52-213ENST00000461743 HAGHQ16775 308 aa8.82□□□□□ -1
VPS52-213ENST00000461743 ATP6V1FQ16864 119 aa8.82□□□□□ -1
VPS52-213ENST00000461743 LILRB2Q8N423 598 aa8.82□□□□□ -1
VPS52-213ENST00000461743 TMEM252Q8N6L7 170 aa8.82□□□□□ -1
VPS52-213ENST00000461743 STXBP6Q8NFX7 210 aa8.82□□□□□ -1
VPS52-213ENST00000461743 DCANP1Q8TF63 244 aa8.82□□□□□ -1
VPS52-213ENST00000461743 GPR82Q96P67 336 aa8.82□□□□□ -1
VPS52-213ENST00000461743 ASCL2Q99929 193 aa8.82□□□□□ -1
VPS52-213ENST00000461743 TMEM147Q9BVK8 224 aa8.82□□□□□ -1
VPS52-213ENST00000461743 SLC25A31Q9H0C2 315 aa8.82□□□□□ -1
VPS52-213ENST00000461743 MAP6D1Q9H9H5 199 aa8.82□□□□□ -1
VPS52-213ENST00000461743 UQCC1Q9NVA1 299 aa8.82□□□□□ -1
VPS52-213ENST00000461743 AGRNO00468 2067 aa8.82□□□□□ -1
VPS52-213ENST00000461743 KIR2DL5BA0A0G2JN68 375 aa8.81□□□□□ -1
VPS52-213ENST00000461743 KIR2DL5BA0A0G2JPC4 375 aa8.81□□□□□ -1
VPS52-213ENST00000461743 RBMY1BA6NDE4 496 aaKnown RBP8.81□□□□□ -1
VPS52-213ENST00000461743 RBMY1EA6NEQ0 496 aaKnown RBP8.81□□□□□ -1
VPS52-213ENST00000461743 S100A6P06703 90 aa8.81□□□□□ -1
VPS52-213ENST00000461743 RBMY1DP0C7P1 496 aaKnown RBP8.81□□□□□ -1
VPS52-213ENST00000461743 LINC00869P0C866 280 aa8.81□□□□□ -1
VPS52-213ENST00000461743 APOC4P55056 127 aa8.81□□□□□ -1
VPS52-213ENST00000461743 ARL16Q0P5N6 197 aa8.81□□□□□ -1
VPS52-213ENST00000461743 RAB31Q13636 194 aa8.81□□□□□ -1
VPS52-213ENST00000461743 KIR2DL5AQ8N109 375 aa8.81□□□□□ -1
VPS52-213ENST00000461743 KIR2DL5BQ8NHK3 375 aa8.81□□□□□ -1
VPS52-213ENST00000461743 SFT2D1Q8WV19 159 aa8.81□□□□□ -1
VPS52-213ENST00000461743 PPP1R1CQ8WVI7 109 aa8.81□□□□□ -1
VPS52-213ENST00000461743 RCHY1Q96PM5 261 aa8.81□□□□□ -1
VPS52-213ENST00000461743 TCEAL7Q9BRU2 100 aa8.81□□□□□ -1
VPS52-213ENST00000461743 NRN1Q9NPD7 142 aa8.81□□□□□ -1
VPS52-213ENST00000461743 IGKV3-7A0A075B6H7 116 aa8.8□□□□□ -1
VPS52-213ENST00000461743 IGSF23A1L1A6 192 aa8.8□□□□□ -1
VPS52-213ENST00000461743 RNF222A6NCQ9 220 aa8.8□□□□□ -1
VPS52-213ENST00000461743 FAM24AA6NFZ4 105 aa8.8□□□□□ -1
VPS52-213ENST00000461743 UBE2CO00762 179 aa8.8□□□□□ -1
VPS52-213ENST00000461743 GATCO43716 136 aaKnown RBP8.8□□□□□ -1
VPS52-213ENST00000461743 MPDU1O75352 247 aa8.8□□□□□ -1
VPS52-213ENST00000461743 CST7O76096 145 aa8.8□□□□□ -1
VPS52-213ENST00000461743 TFPI2P48307 235 aa8.8□□□□□ -1
VPS52-213ENST00000461743 SNRPD3P62318 126 aaKnown RBP8.8□□□□□ -1
VPS52-213ENST00000461743 GBGT1Q8N5D6 347 aa8.8□□□□□ -1
VPS52-213ENST00000461743 STPG3Q8N7X2 389 aa8.8□□□□□ -1
VPS52-213ENST00000461743 TNFSF18Q9UNG2 199 aa8.8□□□□□ -1
VPS52-213ENST00000461743 HIGD1AQ9Y241 93 aa8.8□□□□□ -1
VPS52-213ENST00000461743 WDR83OSQ9Y284 106 aa8.8□□□□□ -1
VPS52-213ENST00000461743 H3BRN7 92 aa8.79□□□□□ -1
VPS52-213ENST00000461743 AGPAT2O15120 278 aa8.79□□□□□ -1
VPS52-213ENST00000461743 HYPMO75409 117 aa8.79□□□□□ -1
VPS52-213ENST00000461743 S100A9P06702 114 aaKnown RBP8.79□□□□□ -1
VPS52-213ENST00000461743 GALR1P47211 349 aa8.79□□□□□ -1
VPS52-213ENST00000461743 RAB5BP61020 215 aa8.79□□□□□ -1
VPS52-213ENST00000461743 LRRC37A5PQ49AS3 106 aa8.79□□□□□ -1
VPS52-213ENST00000461743 OR8I2Q8N0Y5 310 aa8.79□□□□□ -1
VPS52-213ENST00000461743 TMEM217Q8N7C4 229 aa8.79□□□□□ -1
VPS52-213ENST00000461743 OR1B1Q8NGR6 318 aa8.79□□□□□ -1
VPS52-213ENST00000461743 STOML3Q8TAV4 291 aa8.79□□□□□ -1
VPS52-213ENST00000461743 WWC2-AS2Q96NR7 200 aa8.79□□□□□ -1
VPS52-213ENST00000461743 MGST2Q99735 147 aa8.79□□□□□ -1
VPS52-213ENST00000461743 OR5AC2Q9NZP5 309 aa8.79□□□□□ -1
VPS52-213ENST00000461743 UBE2L5PA0A1B0GUS4 154 aa8.78□□□□□ -1
VPS52-213ENST00000461743 H0YIZ8 118 aa8.78□□□□□ -1
VPS52-213ENST00000461743 ORM2P19652 201 aa8.78□□□□□ -1
VPS52-213ENST00000461743 GATA2P23769 480 aaPredicted RBP8.78□□□□□ -1
VPS52-213ENST00000461743 CAMLGP49069 296 aa8.78□□□□□ -1
VPS52-213ENST00000461743 PSMB3P49720 205 aa8.78□□□□□ -1
VPS52-213ENST00000461743 EWSR1Q01844 656 aaKnown RBP eCLIP8.78□□□□□ -1
VPS52-213ENST00000461743 FAM74A1Q5RGS3 127 aa8.78□□□□□ -1
VPS52-213ENST00000461743 TMEM182Q6ZP80 229 aaPredicted RBP8.78□□□□□ -1
VPS52-213ENST00000461743 Q6ZWC4 215 aa8.78□□□□□ -1
VPS52-213ENST00000461743 WFDC3Q8IUB2 231 aa8.78□□□□□ -1
VPS52-213ENST00000461743 SHANK2-AS3Q9BTD1 123 aa8.78□□□□□ -1
VPS52-213ENST00000461743 SEC11CQ9BY50 192 aa8.78□□□□□ -1
VPS52-213ENST00000461743 SLC25A39Q9BZJ4 359 aaPredicted RBP8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms