RNA–Protein interactions for RNA: ENST00000460289.5

PTPN4-208, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 577 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-208ENST00000460289 KLK5Q9Y337 293 aaPredicted RBP16.72■□□□□ 0.27
PTPN4-208ENST00000460289 ZNF705EA8MWA4 302 aaPredicted RBP16.71■□□□□ 0.27
PTPN4-208ENST00000460289 PRAF2O60831 178 aa16.71■□□□□ 0.27
PTPN4-208ENST00000460289 RPL7P18124 248 aaKnown RBP16.71■□□□□ 0.27
PTPN4-208ENST00000460289 S100A10P60903 97 aa16.71■□□□□ 0.27
PTPN4-208ENST00000460289 EBLN2Q6P2I7 272 aa16.71■□□□□ 0.27
PTPN4-208ENST00000460289 NRARPQ7Z6K4 114 aa16.71■□□□□ 0.27
PTPN4-208ENST00000460289 CLUHP3Q96NS8 147 aa16.71■□□□□ 0.27
PTPN4-208ENST00000460289 SCRT1Q9BWW7 348 aa16.71■□□□□ 0.27
PTPN4-208ENST00000460289 C11orf1Q9H5F2 150 aa16.71■□□□□ 0.27
PTPN4-208ENST00000460289 SACSQ9NZJ4 4579 aa16.7■□□□□ 0.26
PTPN4-208ENST00000460289 FAM24AA6NFZ4 105 aa16.7■□□□□ 0.26
PTPN4-208ENST00000460289 AGPAT2O15120 278 aa16.7■□□□□ 0.26
PTPN4-208ENST00000460289 DEFA1P59665 94 aa16.7■□□□□ 0.26
PTPN4-208ENST00000460289 DEFA3P59666 94 aa16.7■□□□□ 0.26
PTPN4-208ENST00000460289 RAB31Q13636 194 aa16.7■□□□□ 0.26
PTPN4-208ENST00000460289 RAB32Q13637 225 aa16.7■□□□□ 0.26
PTPN4-208ENST00000460289 GDF5OSQ5U4N7 250 aa16.7■□□□□ 0.26
PTPN4-208ENST00000460289 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa16.7■□□□□ 0.26
PTPN4-208ENST00000460289 Q8NAQ8 132 aa16.7■□□□□ 0.26
PTPN4-208ENST00000460289 LYRM2Q9NU23 88 aaPredicted RBP16.7■□□□□ 0.26
PTPN4-208ENST00000460289 RYR2Q92736 4967 aa16.7■□□□□ 0.26
PTPN4-208ENST00000460289 INMT-MINDY4F8WBC2 141 aa16.69■□□□□ 0.26
PTPN4-208ENST00000460289 DEFB4AO15263 64 aa16.69■□□□□ 0.26
PTPN4-208ENST00000460289 CST7O76096 145 aa16.69■□□□□ 0.26
PTPN4-208ENST00000460289 PHLDA1Q8WV24 401 aaPredicted RBP16.69■□□□□ 0.26
PTPN4-208ENST00000460289 C17orf77Q96MU5 243 aa16.69■□□□□ 0.26
PTPN4-208ENST00000460289 ARV1Q9H2C2 271 aa16.69■□□□□ 0.26
PTPN4-208ENST00000460289 XCL2Q9UBD3 114 aa16.69■□□□□ 0.26
PTPN4-208ENST00000460289 X6R8D5 127 aa16.69■□□□□ 0.26
PTPN4-208ENST00000460289 LYSTQ99698 3801 aa16.69■□□□□ 0.26
PTPN4-208ENST00000460289 IGKV3-20P01619 116 aa16.68■□□□□ 0.26
PTPN4-208ENST00000460289 S100A11P31949 105 aa16.68■□□□□ 0.26
PTPN4-208ENST00000460289 SULT1A1P50225 295 aa16.68■□□□□ 0.26
PTPN4-208ENST00000460289 DEFB1P60022 68 aa16.68■□□□□ 0.26
PTPN4-208ENST00000460289 PATE2Q6UY27 113 aa16.68■□□□□ 0.26
PTPN4-208ENST00000460289 STX12Q86Y82 276 aa16.68■□□□□ 0.26
PTPN4-208ENST00000460289 OR4B1Q8NGF8 309 aa16.68■□□□□ 0.26
PTPN4-208ENST00000460289 UHRF2Q96PU4 802 aa16.68■□□□□ 0.26
PTPN4-208ENST00000460289 IGHV4-28A0A0C4DH34 117 aa16.67■□□□□ 0.26
PTPN4-208ENST00000460289 NANOS2P60321 138 aaKnown RBP16.67■□□□□ 0.26
PTPN4-208ENST00000460289 HBG1P69891 147 aa16.67■□□□□ 0.26
PTPN4-208ENST00000460289 HBG2P69892 147 aa16.67■□□□□ 0.26
PTPN4-208ENST00000460289 FGL1Q08830 312 aa16.67■□□□□ 0.26
PTPN4-208ENST00000460289 TMEM252Q8N6L7 170 aa16.67■□□□□ 0.26
PTPN4-208ENST00000460289 MGST2Q99735 147 aa16.67■□□□□ 0.26
PTPN4-208ENST00000460289 UQCC1Q9NVA1 299 aa16.67■□□□□ 0.26
PTPN4-208ENST00000460289 A0A0J9YX75 114 aa16.66■□□□□ 0.26
PTPN4-208ENST00000460289 CAMLGP49069 296 aa16.66■□□□□ 0.26
PTPN4-208ENST00000460289 C20orf173Q96LM9 149 aa16.66■□□□□ 0.26
PTPN4-208ENST00000460289 MARVELD1Q9BSK0 173 aa16.66■□□□□ 0.26
PTPN4-208ENST00000460289 HRH4Q9H3N8 390 aa16.66■□□□□ 0.26
PTPN4-208ENST00000460289 ELOA3CA0A087WX78 387 aaPredicted RBP16.65■□□□□ 0.26
PTPN4-208ENST00000460289 F6UB75 175 aa16.65■□□□□ 0.26
PTPN4-208ENST00000460289 RLN2P04090 185 aa16.65■□□□□ 0.26
PTPN4-208ENST00000460289 RBMY1A1P0DJD3 496 aaKnown RBP16.65■□□□□ 0.26
PTPN4-208ENST00000460289 RBMY1CP0DJD4 496 aa16.65■□□□□ 0.26
PTPN4-208ENST00000460289 PSG9Q00887 426 aa16.65■□□□□ 0.26
PTPN4-208ENST00000460289 RBMY1FQ15415 496 aaKnown RBP16.65■□□□□ 0.26
PTPN4-208ENST00000460289 FAM78BQ5VT40 261 aa16.65■□□□□ 0.26
PTPN4-208ENST00000460289 Q6ZRG5 221 aa16.65■□□□□ 0.26
PTPN4-208ENST00000460289 LINC00305Q7Z4B0 112 aa16.65■□□□□ 0.26
PTPN4-208ENST00000460289 NMES1Q9C002 83 aa16.65■□□□□ 0.26
PTPN4-208ENST00000460289 A0A087X0K7 114 aa16.64■□□□□ 0.25
PTPN4-208ENST00000460289 IGSF23A1L1A6 192 aa16.64■□□□□ 0.25
PTPN4-208ENST00000460289 COX7A2P2O60397 106 aa16.64■□□□□ 0.25
PTPN4-208ENST00000460289 CYCSP99999 105 aaKnown RBP16.64■□□□□ 0.25
PTPN4-208ENST00000460289 ATP6V1FQ16864 119 aa16.64■□□□□ 0.25
PTPN4-208ENST00000460289 VWC2Q2TAL6 325 aa16.64■□□□□ 0.25
PTPN4-208ENST00000460289 WDR83OSQ9Y284 106 aa16.64■□□□□ 0.25
PTPN4-208ENST00000460289 TRAV8-2A0A0B4J237 113 aa16.63■□□□□ 0.25
PTPN4-208ENST00000460289 SIX6O95475 246 aa16.63■□□□□ 0.25
PTPN4-208ENST00000460289 LRRC20Q8TCA0 184 aa16.63■□□□□ 0.25
PTPN4-208ENST00000460289 DNAJC4Q9NNZ3 241 aa16.63■□□□□ 0.25
PTPN4-208ENST00000460289 DUSP14O95147 198 aaKnown RBP16.62■□□□□ 0.25
PTPN4-208ENST00000460289 FXYD7P58549 80 aa16.62■□□□□ 0.25
PTPN4-208ENST00000460289 C10orf113Q5VZT2 155 aa16.62■□□□□ 0.25
PTPN4-208ENST00000460289 IGFL4Q6B9Z1 124 aa16.62■□□□□ 0.25
PTPN4-208ENST00000460289 ZNF705AQ6ZN79 300 aaPredicted RBP16.62■□□□□ 0.25
PTPN4-208ENST00000460289 ZNF709Q8N972 641 aa16.62■□□□□ 0.25
PTPN4-208ENST00000460289 TMEM37Q8WXS4 190 aa16.62■□□□□ 0.25
PTPN4-208ENST00000460289 NEU1Q99519 415 aa16.62■□□□□ 0.25
PTPN4-208ENST00000460289 SMIM9A6NGZ8 99 aa16.61■□□□□ 0.25
PTPN4-208ENST00000460289 E5RGE8 158 aa16.61■□□□□ 0.25
PTPN4-208ENST00000460289 BAXQ07812 192 aa16.61■□□□□ 0.25
PTPN4-208ENST00000460289 BPIFA4PQ86YQ2 179 aa16.61■□□□□ 0.25
PTPN4-208ENST00000460289 SLC25A31Q9H0C2 315 aa16.61■□□□□ 0.25
PTPN4-208ENST00000460289 SLC35B3Q9H1N7 401 aa16.61■□□□□ 0.25
PTPN4-208ENST00000460289 PLECQ15149 4684 aaKnown RBP16.61■□□□□ 0.25
PTPN4-208ENST00000460289 C11orf94C9JXX5 98 aa16.6■□□□□ 0.25
PTPN4-208ENST00000460289 RPL29P47914 159 aaKnown RBP16.6■□□□□ 0.25
PTPN4-208ENST00000460289 PRR20EP86478 221 aa16.6■□□□□ 0.25
PTPN4-208ENST00000460289 PRR20CP86479 221 aa16.6■□□□□ 0.25
PTPN4-208ENST00000460289 PRR20DP86480 221 aa16.6■□□□□ 0.25
PTPN4-208ENST00000460289 PRR20BP86481 221 aa16.6■□□□□ 0.25
PTPN4-208ENST00000460289 PRR20AP86496 221 aa16.6■□□□□ 0.25
PTPN4-208ENST00000460289 MIC13Q5XKP0 118 aa16.6■□□□□ 0.25
PTPN4-208ENST00000460289 RNF182Q8N6D2 247 aa16.6■□□□□ 0.25
PTPN4-208ENST00000460289 OR1L4Q8NGR5 311 aa16.6■□□□□ 0.25
PTPN4-208ENST00000460289 CHAC2Q8WUX2 184 aa16.6■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 183.5 ms