RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 CTXND1A0A1B0GTU2 59 aa9.22□□□□□ -0.93
PTPRF-208ENST00000437607 INSL3P51460 131 aa9.22□□□□□ -0.93
PTPRF-208ENST00000437607 TAS2R45P59539 299 aa9.22□□□□□ -0.93
PTPRF-208ENST00000437607 BLOC1S1P78537 153 aa9.22□□□□□ -0.93
PTPRF-208ENST00000437607 USF2Q15853 346 aaPredicted RBP9.22□□□□□ -0.93
PTPRF-208ENST00000437607 FAM78BQ5VT40 261 aa9.22□□□□□ -0.93
PTPRF-208ENST00000437607 TOMM20LQ6UXN7 152 aa9.22□□□□□ -0.93
PTPRF-208ENST00000437607 OR1N2Q8NGR9 330 aa9.22□□□□□ -0.93
PTPRF-208ENST00000437607 METTL26Q96S19 204 aa9.22□□□□□ -0.93
PTPRF-208ENST00000437607 RPRMQ9NS64 109 aa9.22□□□□□ -0.93
PTPRF-208ENST00000437607 RNF24Q9Y225 148 aa9.22□□□□□ -0.93
PTPRF-208ENST00000437607 FUT9Q9Y231 359 aa9.22□□□□□ -0.93
PTPRF-208ENST00000437607 IGHV3OR16-8A0A075B7F1 116 aa9.21□□□□□ -0.94
PTPRF-208ENST00000437607 ZNF320A2RRD8 509 aa9.21□□□□□ -0.94
PTPRF-208ENST00000437607 MAP1LC3B2A6NCE7 125 aa9.21□□□□□ -0.94
PTPRF-208ENST00000437607 TEX46H3BTG2 121 aa9.21□□□□□ -0.94
PTPRF-208ENST00000437607 FRMD6-AS1P0C7T7 363 aa9.21□□□□□ -0.94
PTPRF-208ENST00000437607 BMI1P35226 326 aa9.21□□□□□ -0.94
PTPRF-208ENST00000437607 KHDC3LQ587J8 217 aa9.21□□□□□ -0.94
PTPRF-208ENST00000437607 LINC00305Q7Z4B0 112 aa9.21□□□□□ -0.94
PTPRF-208ENST00000437607 SAT2Q96F10 170 aaPredicted RBP9.21□□□□□ -0.94
PTPRF-208ENST00000437607 UHRF2Q96PU4 802 aa9.21□□□□□ -0.94
PTPRF-208ENST00000437607 MAP1LC3BQ9GZQ8 125 aa9.21□□□□□ -0.94
PTPRF-208ENST00000437607 DNAJC4Q9NNZ3 241 aa9.21□□□□□ -0.94
PTPRF-208ENST00000437607 DAZ1Q9NQZ3 744 aaKnown RBP9.21□□□□□ -0.94
PTPRF-208ENST00000437607 UFC1Q9Y3C8 167 aa9.21□□□□□ -0.94
PTPRF-208ENST00000437607 H3BRN7 92 aa9.2□□□□□ -0.94
PTPRF-208ENST00000437607 HBE1P02100 147 aa9.2□□□□□ -0.94
PTPRF-208ENST00000437607 H2AFB1P0C5Y9 115 aa9.2□□□□□ -0.94
PTPRF-208ENST00000437607 FHITP49789 147 aa9.2□□□□□ -0.94
PTPRF-208ENST00000437607 SLURP1P55000 103 aa9.2□□□□□ -0.94
PTPRF-208ENST00000437607 GPHB5Q86YW7 130 aa9.2□□□□□ -0.94
PTPRF-208ENST00000437607 IQCF2Q8IXL9 164 aa9.2□□□□□ -0.94
PTPRF-208ENST00000437607 RPP25LQ8N5L8 163 aaKnown RBP9.2□□□□□ -0.94
PTPRF-208ENST00000437607 DLX4Q92988 240 aaPredicted RBP9.2□□□□□ -0.94
PTPRF-208ENST00000437607 RAB24Q969Q5 203 aa9.2□□□□□ -0.94
PTPRF-208ENST00000437607 SLC25A39Q9BZJ4 359 aaPredicted RBP9.2□□□□□ -0.94
PTPRF-208ENST00000437607 TECRQ9NZ01 308 aaKnown RBP9.2□□□□□ -0.94
PTPRF-208ENST00000437607 PLA2G2EQ9NZK7 142 aa9.2□□□□□ -0.94
PTPRF-208ENST00000437607 LCE6AA0A183 80 aa9.19□□□□□ -0.94
PTPRF-208ENST00000437607 A8MWP6 167 aa9.19□□□□□ -0.94
PTPRF-208ENST00000437607 OVOL1O14753 267 aa9.19□□□□□ -0.94
PTPRF-208ENST00000437607 ZNF207O43670 478 aaKnown RBP9.19□□□□□ -0.94
PTPRF-208ENST00000437607 OR7C2O60412 319 aa9.19□□□□□ -0.94
PTPRF-208ENST00000437607 C8orf88P0DMB2 117 aa9.19□□□□□ -0.94
PTPRF-208ENST00000437607 NPPCP23582 126 aa9.19□□□□□ -0.94
PTPRF-208ENST00000437607 SYNJ2BPP57105 145 aa9.19□□□□□ -0.94
PTPRF-208ENST00000437607 SPATA31B1PQ5VZV4 182 aa9.19□□□□□ -0.94
PTPRF-208ENST00000437607 LCN15Q6UWW0 184 aa9.19□□□□□ -0.94
PTPRF-208ENST00000437607 UNQ9165/PRO28630Q6UXU0 137 aa9.19□□□□□ -0.94
PTPRF-208ENST00000437607 MIR17HGQ75NE6 70 aa9.19□□□□□ -0.94
PTPRF-208ENST00000437607 TMEM37Q8WXS4 190 aa9.19□□□□□ -0.94
PTPRF-208ENST00000437607 SHANK2-AS3Q9BTD1 123 aa9.19□□□□□ -0.94
PTPRF-208ENST00000437607 SCRT1Q9BWW7 348 aa9.19□□□□□ -0.94
PTPRF-208ENST00000437607 TMEM231Q9H6L2 316 aa9.19□□□□□ -0.94
PTPRF-208ENST00000437607 SEPSECSQ9HD40 501 aaKnown RBP9.19□□□□□ -0.94
PTPRF-208ENST00000437607 MRPL27Q9P0M9 148 aaKnown RBP9.19□□□□□ -0.94
PTPRF-208ENST00000437607 PEMTQ9UBM1 199 aa9.19□□□□□ -0.94
PTPRF-208ENST00000437607 A0A1B0GV50 99 aa9.18□□□□□ -0.94
PTPRF-208ENST00000437607 LGALS9O00182 355 aa9.18□□□□□ -0.94
PTPRF-208ENST00000437607 HMGB3O15347 200 aaKnown RBP9.18□□□□□ -0.94
PTPRF-208ENST00000437607 SAP30O75446 220 aa9.18□□□□□ -0.94
PTPRF-208ENST00000437607 NMBP08949 121 aa9.18□□□□□ -0.94
PTPRF-208ENST00000437607 GP9P14770 177 aa9.18□□□□□ -0.94
PTPRF-208ENST00000437607 UBE2L3P68036 154 aaKnown RBP9.18□□□□□ -0.94
PTPRF-208ENST00000437607 ZNF726P1Q15940 193 aa9.18□□□□□ -0.94
PTPRF-208ENST00000437607 CLLU1Q5K131 121 aa9.18□□□□□ -0.94
PTPRF-208ENST00000437607 PATE2Q6UY27 113 aa9.18□□□□□ -0.94
PTPRF-208ENST00000437607 PQLC2Q6ZP29 291 aa9.18□□□□□ -0.94
PTPRF-208ENST00000437607 SSX7Q7RTT5 188 aa9.18□□□□□ -0.94
PTPRF-208ENST00000437607 SFT2D1Q8WV19 159 aa9.18□□□□□ -0.94
PTPRF-208ENST00000437607 PCNPQ8WW12 178 aaKnown RBP9.18□□□□□ -0.94
PTPRF-208ENST00000437607 GRAMD2BQ96HH9 432 aa9.18□□□□□ -0.94
PTPRF-208ENST00000437607 ZNF414Q96IQ9 312 aa9.18□□□□□ -0.94
PTPRF-208ENST00000437607 FRAS1Q86XX4 4008 aa9.18□□□□□ -0.94
PTPRF-208ENST00000437607 A0A1W2PS18 150 aa9.17□□□□□ -0.94
PTPRF-208ENST00000437607 EIF3GO75821 320 aaKnown RBP eCLIP9.17□□□□□ -0.94
PTPRF-208ENST00000437607 CXorf1O96002 111 aa9.17□□□□□ -0.94
PTPRF-208ENST00000437607 STAG3L2P0CL84 134 aa9.17□□□□□ -0.94
PTPRF-208ENST00000437607 STAG3L3P0CL85 134 aa9.17□□□□□ -0.94
PTPRF-208ENST00000437607 ARL14EPLP0DKL9 152 aa9.17□□□□□ -0.94
PTPRF-208ENST00000437607 CRYBB3P26998 211 aa9.17□□□□□ -0.94
PTPRF-208ENST00000437607 FGF8P55075 233 aaPredicted RBP9.17□□□□□ -0.94
PTPRF-208ENST00000437607 MORN5Q5VZ52 161 aa9.17□□□□□ -0.94
PTPRF-208ENST00000437607 LEMD1Q68G75 181 aa9.17□□□□□ -0.94
PTPRF-208ENST00000437607 STXBP6Q8NFX7 210 aa9.17□□□□□ -0.94
PTPRF-208ENST00000437607 CITED4Q96RK1 184 aa9.17□□□□□ -0.94
PTPRF-208ENST00000437607 TM2D3Q9BRN9 247 aa9.17□□□□□ -0.94
PTPRF-208ENST00000437607 SLC25A2Q9BXI2 301 aa9.17□□□□□ -0.94
PTPRF-208ENST00000437607 HRH4Q9H3N8 390 aa9.17□□□□□ -0.94
PTPRF-208ENST00000437607 IGHV3-49A0A0A0MS15 119 aa9.16□□□□□ -0.94
PTPRF-208ENST00000437607 IGHV7-4-1A0A0J9YVY3 117 aa9.16□□□□□ -0.94
PTPRF-208ENST00000437607 TMEM213A2RRL7 107 aa9.16□□□□□ -0.94
PTPRF-208ENST00000437607 ZNF98A6NK75 572 aa9.16□□□□□ -0.94
PTPRF-208ENST00000437607 K7EMT4 169 aa9.16□□□□□ -0.94
PTPRF-208ENST00000437607 IFNA1P01562 189 aa9.16□□□□□ -0.94
PTPRF-208ENST00000437607 RPL7P18124 248 aaKnown RBP9.16□□□□□ -0.94
PTPRF-208ENST00000437607 KLF5Q13887 457 aaPredicted RBP9.16□□□□□ -0.94
PTPRF-208ENST00000437607 ZFAND6Q6FIF0 208 aa9.16□□□□□ -0.94
PTPRF-208ENST00000437607 BPIFA4PQ86YQ2 179 aa9.16□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 95.9 ms