RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 RPL7P18124 248 aaKnown RBP10.89□□□□□ -0.67
SKA1-202ENST00000398452 PPT1P50897 306 aa10.89□□□□□ -0.67
SKA1-202ENST00000398452 PATE2Q6UY27 113 aa10.89□□□□□ -0.67
SKA1-202ENST00000398452 BPIFA4PQ86YQ2 179 aa10.89□□□□□ -0.67
SKA1-202ENST00000398452 PCNPQ8WW12 178 aaKnown RBP10.89□□□□□ -0.67
SKA1-202ENST00000398452 ELOVL1Q9BW60 279 aa10.89□□□□□ -0.67
SKA1-202ENST00000398452 TMEM167BQ9NRX6 74 aa10.89□□□□□ -0.67
SKA1-202ENST00000398452 ZNF98A6NK75 572 aa10.88□□□□□ -0.67
SKA1-202ENST00000398452 NMBP08949 121 aa10.88□□□□□ -0.67
SKA1-202ENST00000398452 STAG3L2P0CL84 134 aa10.88□□□□□ -0.67
SKA1-202ENST00000398452 STAG3L3P0CL85 134 aa10.88□□□□□ -0.67
SKA1-202ENST00000398452 GALR1P47211 349 aa10.88□□□□□ -0.67
SKA1-202ENST00000398452 SLURP1P55000 103 aa10.88□□□□□ -0.67
SKA1-202ENST00000398452 FGF8P55075 233 aaPredicted RBP10.88□□□□□ -0.67
SKA1-202ENST00000398452 SPATA31B1PQ5VZV4 182 aa10.88□□□□□ -0.67
SKA1-202ENST00000398452 UNQ9165/PRO28630Q6UXU0 137 aa10.88□□□□□ -0.67
SKA1-202ENST00000398452 MARC2Q969Z3 335 aa10.88□□□□□ -0.67
SKA1-202ENST00000398452 RAX2Q96IS3 184 aa10.88□□□□□ -0.67
SKA1-202ENST00000398452 DUX3Q96PT4 197 aa10.88□□□□□ -0.67
SKA1-202ENST00000398452 PAXXQ9BUH6 204 aa10.88□□□□□ -0.67
SKA1-202ENST00000398452 SCRT1Q9BWW7 348 aa10.88□□□□□ -0.67
SKA1-202ENST00000398452 OR51M1Q9H341 326 aa10.88□□□□□ -0.67
SKA1-202ENST00000398452 ANK2Q01484 3957 aa10.87□□□□□ -0.67
SKA1-202ENST00000398452 TRAV1-1A0A0B4J248 108 aa10.87□□□□□ -0.67
SKA1-202ENST00000398452 IGHV7-4-1A0A0J9YVY3 117 aa10.87□□□□□ -0.67
SKA1-202ENST00000398452 ARL14EPLP0DKL9 152 aa10.87□□□□□ -0.67
SKA1-202ENST00000398452 ATF4P18848 351 aaPredicted RBP10.87□□□□□ -0.67
SKA1-202ENST00000398452 CRYBB3P26998 211 aa10.87□□□□□ -0.67
SKA1-202ENST00000398452 PSMB3P49720 205 aa10.87□□□□□ -0.67
SKA1-202ENST00000398452 UBE2L3P68036 154 aaKnown RBP10.87□□□□□ -0.67
SKA1-202ENST00000398452 KLF5Q13887 457 aaPredicted RBP10.87□□□□□ -0.67
SKA1-202ENST00000398452 ZNF726P1Q15940 193 aa10.87□□□□□ -0.67
SKA1-202ENST00000398452 C1orf194Q5T5A4 169 aa10.87□□□□□ -0.67
SKA1-202ENST00000398452 HIST2H2BDQ6DRA6 164 aa10.87□□□□□ -0.67
SKA1-202ENST00000398452 TRAV5A0A0B4J249 113 aa10.86□□□□□ -0.67
SKA1-202ENST00000398452 HELTA6NFD8 242 aa10.86□□□□□ -0.67
SKA1-202ENST00000398452 ZNF785A8K8V0 405 aa10.86□□□□□ -0.67
SKA1-202ENST00000398452 A8MWP6 167 aa10.86□□□□□ -0.67
SKA1-202ENST00000398452 KRTAP10-3P60369 221 aa10.86□□□□□ -0.67
SKA1-202ENST00000398452 TM4SF20Q53R12 229 aa10.86□□□□□ -0.67
SKA1-202ENST00000398452 LEMD1Q68G75 181 aa10.86□□□□□ -0.67
SKA1-202ENST00000398452 OR9G4Q8NGQ1 327 aa10.86□□□□□ -0.67
SKA1-202ENST00000398452 DYNLRB2Q8TF09 96 aa10.86□□□□□ -0.67
SKA1-202ENST00000398452 CITED1Q99966 193 aa10.86□□□□□ -0.67
SKA1-202ENST00000398452 SLC25A2Q9BXI2 301 aa10.86□□□□□ -0.67
SKA1-202ENST00000398452 IGHV3OR16-13A0A075B7E8 117 aa10.85□□□□□ -0.67
SKA1-202ENST00000398452 IGHV3-49A0A0A0MS15 119 aa10.85□□□□□ -0.67
SKA1-202ENST00000398452 IGHV3-74A0A0B4J1X5 117 aa10.85□□□□□ -0.67
SKA1-202ENST00000398452 IGHV3-66A0A0C4DH42 116 aa10.85□□□□□ -0.67
SKA1-202ENST00000398452 OVOL1O14753 267 aa10.85□□□□□ -0.67
SKA1-202ENST00000398452 BUB3O43684 328 aa10.85□□□□□ -0.67
SKA1-202ENST00000398452 EIF3GO75821 320 aaKnown RBP eCLIP10.85□□□□□ -0.67
SKA1-202ENST00000398452 CD5P06127 495 aa10.85□□□□□ -0.67
SKA1-202ENST00000398452 GCHFRP30047 84 aa10.85□□□□□ -0.67
SKA1-202ENST00000398452 TAGLN2P37802 199 aaKnown RBP10.85□□□□□ -0.67
SKA1-202ENST00000398452 RPL11P62913 178 aaKnown RBP10.85□□□□□ -0.67
SKA1-202ENST00000398452 FHL3Q13643 280 aa10.85□□□□□ -0.67
SKA1-202ENST00000398452 NDUFA5Q16718 116 aa10.85□□□□□ -0.67
SKA1-202ENST00000398452 SHISA2Q6UWI4 295 aa10.85□□□□□ -0.67
SKA1-202ENST00000398452 DLX4Q92988 240 aaPredicted RBP10.85□□□□□ -0.67
SKA1-202ENST00000398452 ZNF747Q9BV97 191 aa10.85□□□□□ -0.67
SKA1-202ENST00000398452 RHPN1-AS1Q9BWJ2 59 aa10.85□□□□□ -0.67
SKA1-202ENST00000398452 MANBALQ9NQG1 85 aa10.85□□□□□ -0.67
SKA1-202ENST00000398452 TMEM14CQ9P0S9 112 aa10.85□□□□□ -0.67
SKA1-202ENST00000398452 OR10J4P0C629 311 aa10.84□□□□□ -0.67
SKA1-202ENST00000398452 MEOX2P50222 304 aa10.84□□□□□ -0.67
SKA1-202ENST00000398452 SIGLEC15Q6ZMC9 328 aa10.84□□□□□ -0.67
SKA1-202ENST00000398452 SSX7Q7RTT5 188 aa10.84□□□□□ -0.67
SKA1-202ENST00000398452 EIF5A2Q9GZV4 153 aaKnown RBP10.84□□□□□ -0.67
SKA1-202ENST00000398452 GNG13Q9P2W3 67 aa10.84□□□□□ -0.67
SKA1-202ENST00000398452 SMPXQ9UHP9 88 aa10.84□□□□□ -0.67
SKA1-202ENST00000398452 C2orf70A6NJV1 201 aa10.83□□□□□ -0.68
SKA1-202ENST00000398452 HIST1H1EP10412 219 aaKnown RBP10.83□□□□□ -0.68
SKA1-202ENST00000398452 GUK1Q16774 197 aa10.83□□□□□ -0.68
SKA1-202ENST00000398452 MORN5Q5VZ52 161 aa10.83□□□□□ -0.68
SKA1-202ENST00000398452 C16orf54Q6UWD8 224 aa10.83□□□□□ -0.68
SKA1-202ENST00000398452 BLNKQ8WV28 456 aa10.83□□□□□ -0.68
SKA1-202ENST00000398452 FAM167A-AS1Q96KT0 104 aa10.83□□□□□ -0.68
SKA1-202ENST00000398452 MGAM2Q2M2H8 2515 aa10.82□□□□□ -0.68
SKA1-202ENST00000398452 TMEM213A2RRL7 107 aa10.82□□□□□ -0.68
SKA1-202ENST00000398452 ADARB2-AS1A8MUL3 147 aa10.82□□□□□ -0.68
SKA1-202ENST00000398452 CHEK1O14757 476 aa10.82□□□□□ -0.68
SKA1-202ENST00000398452 NBEAP1P0C6P0 100 aa10.82□□□□□ -0.68
SKA1-202ENST00000398452 PYYP10082 97 aa10.82□□□□□ -0.68
SKA1-202ENST00000398452 FOLR2P14207 255 aa10.82□□□□□ -0.68
SKA1-202ENST00000398452 CBLN1P23435 193 aa10.82□□□□□ -0.68
SKA1-202ENST00000398452 PAFAH1B2P68402 229 aa10.82□□□□□ -0.68
SKA1-202ENST00000398452 SAMD13Q5VXD3 122 aa10.82□□□□□ -0.68
SKA1-202ENST00000398452 CST9LP1Q5W188 147 aa10.82□□□□□ -0.68
SKA1-202ENST00000398452 LYPD6BQ8NI32 183 aa10.82□□□□□ -0.68
SKA1-202ENST00000398452 NKX6-2Q9C056 277 aaPredicted RBP10.82□□□□□ -0.68
SKA1-202ENST00000398452 TMPRSS5Q9H3S3 457 aa10.82□□□□□ -0.68
SKA1-202ENST00000398452 U3KQE9 123 aa10.82□□□□□ -0.68
SKA1-202ENST00000398452 APOHP02749 345 aaPredicted RBP10.81□□□□□ -0.68
SKA1-202ENST00000398452 GP9P14770 177 aa10.81□□□□□ -0.68
SKA1-202ENST00000398452 UBE2G2P60604 165 aa10.81□□□□□ -0.68
SKA1-202ENST00000398452 PEA15Q15121 130 aa10.81□□□□□ -0.68
SKA1-202ENST00000398452 HAGHQ16775 308 aa10.81□□□□□ -0.68
SKA1-202ENST00000398452 RBPMS2Q6ZRY4 209 aaKnown RBP10.81□□□□□ -0.68
SKA1-202ENST00000398452 TCF24Q7RTU0 167 aa10.81□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms