RNA–Protein interactions for RNA: ENST00000360019.7

CLN3-206, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,840 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-206ENST00000360019 CD28P10747 220 aa14.25□□□□□ -0.13
CLN3-206ENST00000360019 TAGLN2P37802 199 aaKnown RBP14.25□□□□□ -0.13
CLN3-206ENST00000360019 KHDC1LQ5JSQ8 128 aa14.25□□□□□ -0.13
CLN3-206ENST00000360019 C11orf44Q8N8P7 122 aa14.25□□□□□ -0.13
CLN3-206ENST00000360019 RNF114Q9Y508 228 aa14.25□□□□□ -0.13
CLN3-206ENST00000360019 C11orf94C9JXX5 98 aa14.25□□□□□ -0.13
CLN3-206ENST00000360019 BUB3O43684 328 aa14.25□□□□□ -0.13
CLN3-206ENST00000360019 APOHP02749 345 aaPredicted RBP14.25□□□□□ -0.13
CLN3-206ENST00000360019 ZP3P21754 424 aa14.25□□□□□ -0.13
CLN3-206ENST00000360019 CRYBB3P26998 211 aa14.25□□□□□ -0.13
CLN3-206ENST00000360019 PROK1P58294 105 aa14.25□□□□□ -0.13
CLN3-206ENST00000360019 CST9LP1Q5W188 147 aa14.25□□□□□ -0.13
CLN3-206ENST00000360019 METTL26Q96S19 204 aa14.25□□□□□ -0.13
CLN3-206ENST00000360019 SLC35B3Q9H1N7 401 aa14.25□□□□□ -0.13
CLN3-206ENST00000360019 KRBOX1C9JBD0 128 aa14.24□□□□□ -0.13
CLN3-206ENST00000360019 DEFB136Q30KP8 78 aa14.24□□□□□ -0.13
CLN3-206ENST00000360019 BPIFA4PQ86YQ2 179 aa14.24□□□□□ -0.13
CLN3-206ENST00000360019 GPHB5Q86YW7 130 aa14.24□□□□□ -0.13
CLN3-206ENST00000360019 C4orf3Q8WVX3 66 aa14.24□□□□□ -0.13
CLN3-206ENST00000360019 U3KQE9 123 aa14.24□□□□□ -0.13
CLN3-206ENST00000360019 ARL2-SNX15V9GYD0 113 aa14.24□□□□□ -0.13
CLN3-206ENST00000360019 IGHV3OR16-13A0A075B7E8 117 aa14.23□□□□□ -0.13
CLN3-206ENST00000360019 IGHV3-74A0A0B4J1X5 117 aa14.23□□□□□ -0.13
CLN3-206ENST00000360019 IGHV3-66A0A0C4DH42 116 aa14.23□□□□□ -0.13
CLN3-206ENST00000360019 ZNF320A2RRD8 509 aa14.23□□□□□ -0.13
CLN3-206ENST00000360019 H3BQ15 152 aa14.23□□□□□ -0.13
CLN3-206ENST00000360019 IGLC2P0DOY2 106 aa14.23□□□□□ -0.13
CLN3-206ENST00000360019 NPPCP23582 126 aa14.23□□□□□ -0.13
CLN3-206ENST00000360019 RPEL1Q2QD12 228 aa14.23□□□□□ -0.13
CLN3-206ENST00000360019 CYB561D1Q8N8Q1 229 aa14.23□□□□□ -0.13
CLN3-206ENST00000360019 OR4F4Q96R69 305 aa14.23□□□□□ -0.13
CLN3-206ENST00000360019 ZNF586Q9NXT0 402 aa14.23□□□□□ -0.13
CLN3-206ENST00000360019 IGHV3-49A0A0A0MS15 119 aa14.22□□□□□ -0.13
CLN3-206ENST00000360019 H3BTX0 84 aa14.22□□□□□ -0.13
CLN3-206ENST00000360019 NBEAP1P0C6P0 100 aa14.22□□□□□ -0.13
CLN3-206ENST00000360019 BLNKQ8WV28 456 aa14.22□□□□□ -0.13
CLN3-206ENST00000360019 A0A1W2PRE2 83 aa14.22□□□□□ -0.13
CLN3-206ENST00000360019 GGTLC3B5MD39 225 aa14.22□□□□□ -0.13
CLN3-206ENST00000360019 HIST1H1EP10412 219 aaKnown RBP14.22□□□□□ -0.13
CLN3-206ENST00000360019 S100A7P31151 101 aa14.22□□□□□ -0.13
CLN3-206ENST00000360019 FAM106AQ4KMX7 169 aa14.22□□□□□ -0.13
CLN3-206ENST00000360019 KLHL30-AS1Q8NEE0 82 aa14.22□□□□□ -0.13
CLN3-206ENST00000360019 CITED2Q99967 270 aaPredicted RBP14.22□□□□□ -0.13
CLN3-206ENST00000360019 F8W036 122 aa14.21□□□□□ -0.13
CLN3-206ENST00000360019 HOXD3P31249 432 aaPredicted RBP14.21□□□□□ -0.13
CLN3-206ENST00000360019 CCDC28AQ8IWP9 274 aa14.21□□□□□ -0.13
CLN3-206ENST00000360019 OR8I2Q8N0Y5 310 aa14.21□□□□□ -0.13
CLN3-206ENST00000360019 WFDC12Q8WWY7 111 aa14.21□□□□□ -0.13
CLN3-206ENST00000360019 RNF24Q9Y225 148 aa14.21□□□□□ -0.13
CLN3-206ENST00000360019 RPL7P18124 248 aaKnown RBP14.2□□□□□ -0.14
CLN3-206ENST00000360019 CEBPGP53567 150 aa14.2□□□□□ -0.14
CLN3-206ENST00000360019 TM4SF20Q53R12 229 aa14.2□□□□□ -0.14
CLN3-206ENST00000360019 C10orf91Q5T1B1 145 aa14.2□□□□□ -0.14
CLN3-206ENST00000360019 OR4F17Q8NGA8 305 aa14.2□□□□□ -0.14
CLN3-206ENST00000360019 C17orf77Q96MU5 243 aa14.2□□□□□ -0.14
CLN3-206ENST00000360019 SEC11CQ9BY50 192 aa14.2□□□□□ -0.14
CLN3-206ENST00000360019 DAZ1Q9NQZ3 744 aaKnown RBP14.2□□□□□ -0.14
CLN3-206ENST00000360019 SMAD5-AS1Q9Y6J3 95 aa14.2□□□□□ -0.14
CLN3-206ENST00000360019 FAM90A2PQ658T7 463 aa14.2□□□□□ -0.14
CLN3-206ENST00000360019 C8orf86Q6ZUL3 223 aa14.2□□□□□ -0.14
CLN3-206ENST00000360019 OR11H1Q8NG94 326 aa14.2□□□□□ -0.14
CLN3-206ENST00000360019 DUX3Q96PT4 197 aa14.2□□□□□ -0.14
CLN3-206ENST00000360019 TXNDC17Q9BRA2 123 aa14.2□□□□□ -0.14
CLN3-206ENST00000360019 TRBV19A0A075B6N1 114 aa14.19□□□□□ -0.14
CLN3-206ENST00000360019 NDUFS6O75380 124 aaKnown RBP14.19□□□□□ -0.14
CLN3-206ENST00000360019 NDUFB4O95168 129 aa14.19□□□□□ -0.14
CLN3-206ENST00000360019 EDN2P20800 178 aa14.19□□□□□ -0.14
CLN3-206ENST00000360019 MYCNOSP40205 109 aa14.19□□□□□ -0.14
CLN3-206ENST00000360019 RANP62826 216 aaKnown RBP14.19□□□□□ -0.14
CLN3-206ENST00000360019 C1orf194Q5T5A4 169 aa14.19□□□□□ -0.14
CLN3-206ENST00000360019 LINC01619G3V211 115 aa14.18□□□□□ -0.14
CLN3-206ENST00000360019 TMEM250H0YL14 139 aa14.18□□□□□ -0.14
CLN3-206ENST00000360019 K7EMT4 169 aa14.18□□□□□ -0.14
CLN3-206ENST00000360019 PDE6DO43924 150 aa14.18□□□□□ -0.14
CLN3-206ENST00000360019 SYNJ2BPP57105 145 aa14.18□□□□□ -0.14
CLN3-206ENST00000360019 SUMO1P63165 101 aaKnown RBP14.18□□□□□ -0.14
CLN3-206ENST00000360019 REC114Q7Z4M0 266 aa14.18□□□□□ -0.14
CLN3-206ENST00000360019 OR1N2Q8NGR9 330 aa14.18□□□□□ -0.14
CLN3-206ENST00000360019 CARHSP1Q9Y2V2 147 aaKnown RBP14.18□□□□□ -0.14
CLN3-206ENST00000360019 TSSC4Q9Y5U2 329 aaPredicted RBP14.18□□□□□ -0.14
CLN3-206ENST00000360019 SCO2A0A1W2PP80 73 aa14.18□□□□□ -0.14
CLN3-206ENST00000360019 A0A1W2PRX2 142 aa14.18□□□□□ -0.14
CLN3-206ENST00000360019 SLC17A3O00476 420 aa14.18□□□□□ -0.14
CLN3-206ENST00000360019 SLURP1P55000 103 aa14.18□□□□□ -0.14
CLN3-206ENST00000360019 KRTAP10-3P60369 221 aa14.18□□□□□ -0.14
CLN3-206ENST00000360019 SOHLH1Q5JUK2 328 aa14.18□□□□□ -0.14
CLN3-206ENST00000360019 C16orf54Q6UWD8 224 aa14.18□□□□□ -0.14
CLN3-206ENST00000360019 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP14.18□□□□□ -0.14
CLN3-206ENST00000360019 ELOVL1Q9BW60 279 aa14.18□□□□□ -0.14
CLN3-206ENST00000360019 UFC1Q9Y3C8 167 aa14.18□□□□□ -0.14
CLN3-206ENST00000360019 IGHV7-4-1A0A0J9YVY3 117 aa14.17□□□□□ -0.14
CLN3-206ENST00000360019 TMEM213A2RRL7 107 aa14.17□□□□□ -0.14
CLN3-206ENST00000360019 APOC3P02656 99 aa14.17□□□□□ -0.14
CLN3-206ENST00000360019 KLF5Q13887 457 aaPredicted RBP14.17□□□□□ -0.14
CLN3-206ENST00000360019 GLMPQ8WWB7 406 aa14.17□□□□□ -0.14
CLN3-206ENST00000360019 GPR82Q96P67 336 aa14.17□□□□□ -0.14
CLN3-206ENST00000360019 A8MWP6 167 aa14.16□□□□□ -0.14
CLN3-206ENST00000360019 F6UZH7 168 aa14.16□□□□□ -0.14
CLN3-206ENST00000360019 LGALS9O00182 355 aa14.16□□□□□ -0.14
CLN3-206ENST00000360019 GUCA2BQ16661 112 aa14.16□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 92.9 ms