RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 CBLN1P23435 193 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 AKR1D1P51857 326 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 TDRG1Q3Y452 100 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 ADAMTSL5Q6ZMM2 481 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 HOGA1Q86XE5 327 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 AJUBAQ96IF1 538 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 TRAV8-3A0A0A6YYJ7 113 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 PPP1R2P9O14990 202 aa6.68□□□□□ -1.34
HMGB1-203ENST00000341423 IFI27P40305 119 aaPredicted RBP6.68□□□□□ -1.34
HMGB1-203ENST00000341423 HSBP1O75506 76 aa6.67□□□□□ -1.34
HMGB1-203ENST00000341423 ERCC8Q13216 396 aa6.67□□□□□ -1.34
HMGB1-203ENST00000341423 DMKNQ6E0U4 476 aaPredicted RBP6.67□□□□□ -1.34
HMGB1-203ENST00000341423 A0A1B0GVG6 124 aa6.67□□□□□ -1.34
HMGB1-203ENST00000341423 SMIM9A6NGZ8 99 aa6.67□□□□□ -1.34
HMGB1-203ENST00000341423 H0YJW9 148 aa6.67□□□□□ -1.34
HMGB1-203ENST00000341423 ZNF737O75373 536 aa6.67□□□□□ -1.34
HMGB1-203ENST00000341423 SFT2D2O95562 160 aa6.67□□□□□ -1.34
HMGB1-203ENST00000341423 RPS11P62280 158 aaKnown RBP eCLIP6.67□□□□□ -1.34
HMGB1-203ENST00000341423 TMEM50BP56557 158 aa6.67□□□□□ -1.34
HMGB1-203ENST00000341423 SEC11AP67812 179 aa6.67□□□□□ -1.34
HMGB1-203ENST00000341423 FABP9Q0Z7S8 132 aa6.67□□□□□ -1.34
HMGB1-203ENST00000341423 OR5H6Q8NGV6 325 aa6.67□□□□□ -1.34
HMGB1-203ENST00000341423 C11orf68Q9H3H3 251 aaKnown RBP6.67□□□□□ -1.34
HMGB1-203ENST00000341423 PLA2G2EQ9NZK7 142 aa6.67□□□□□ -1.34
HMGB1-203ENST00000341423 CSN3P07498 182 aa6.67□□□□□ -1.34
HMGB1-203ENST00000341423 CD300CQ08708 224 aa6.67□□□□□ -1.34
HMGB1-203ENST00000341423 APRG1Q8IVJ8 170 aa6.67□□□□□ -1.34
HMGB1-203ENST00000341423 WFDC6Q9BQY6 131 aa6.67□□□□□ -1.34
HMGB1-203ENST00000341423 I3L521 148 aa6.66□□□□□ -1.34
HMGB1-203ENST00000341423 OR11H6Q8NGC7 330 aa6.66□□□□□ -1.34
HMGB1-203ENST00000341423 ZNF696Q9H7X3 374 aa6.66□□□□□ -1.34
HMGB1-203ENST00000341423 SMPXQ9UHP9 88 aa6.66□□□□□ -1.34
HMGB1-203ENST00000341423 VWC2LB2RUY7 222 aa6.66□□□□□ -1.34
HMGB1-203ENST00000341423 RS1O15537 224 aa6.66□□□□□ -1.34
HMGB1-203ENST00000341423 FRMD6-AS1P0C7T7 363 aa6.66□□□□□ -1.34
HMGB1-203ENST00000341423 CCKARP32238 428 aa6.66□□□□□ -1.34
HMGB1-203ENST00000341423 KLF5Q13887 457 aaPredicted RBP6.66□□□□□ -1.34
HMGB1-203ENST00000341423 F11RQ9Y624 299 aaKnown RBP6.66□□□□□ -1.34
HMGB1-203ENST00000341423 PTTG1IPP53801 180 aa6.66□□□□□ -1.34
HMGB1-203ENST00000341423 TCTAP57738 103 aa6.66□□□□□ -1.34
HMGB1-203ENST00000341423 NHLH2Q02577 135 aa6.66□□□□□ -1.34
HMGB1-203ENST00000341423 HAGHQ16775 308 aa6.66□□□□□ -1.34
HMGB1-203ENST00000341423 hDV102S1A0JD36 115 aa6.66□□□□□ -1.34
HMGB1-203ENST00000341423 INS-IGF2F8WCM5 200 aa6.66□□□□□ -1.34
HMGB1-203ENST00000341423 ZNF701M0R085 212 aaPredicted RBP6.66□□□□□ -1.34
HMGB1-203ENST00000341423 C17orf98A8MV24 154 aa6.66□□□□□ -1.34
HMGB1-203ENST00000341423 C5orf66Q9H5L9 145 aa6.66□□□□□ -1.34
HMGB1-203ENST00000341423 SETD2Q9BYW2 2564 aaPredicted RBP6.66□□□□□ -1.34
HMGB1-203ENST00000341423 TRBV20OR9-2A0A075B6H5 130 aa6.65□□□□□ -1.34
HMGB1-203ENST00000341423 LINC00469Q8N7U9 141 aa6.65□□□□□ -1.34
HMGB1-203ENST00000341423 KLK15Q9H2R5 256 aa6.65□□□□□ -1.34
HMGB1-203ENST00000341423 RBKSQ9H477 322 aa6.65□□□□□ -1.34
HMGB1-203ENST00000341423 PGPEP1Q9NXJ5 209 aa6.65□□□□□ -1.34
HMGB1-203ENST00000341423 A6NDX4 124 aa6.65□□□□□ -1.34
HMGB1-203ENST00000341423 NAT1P18440 290 aa6.65□□□□□ -1.34
HMGB1-203ENST00000341423 C12orf57Q99622 126 aa6.65□□□□□ -1.34
HMGB1-203ENST00000341423 ST20Q9HBF5 79 aa6.65□□□□□ -1.34
HMGB1-203ENST00000341423 A8MXK9 166 aa6.65□□□□□ -1.35
HMGB1-203ENST00000341423 G3V3Q6 166 aa6.65□□□□□ -1.35
HMGB1-203ENST00000341423 TNFRSF9Q07011 255 aa6.65□□□□□ -1.35
HMGB1-203ENST00000341423 C10orf55Q5SWW7 151 aa6.65□□□□□ -1.35
HMGB1-203ENST00000341423 ZNF497Q6ZNH5 498 aa6.65□□□□□ -1.35
HMGB1-203ENST00000341423 GVQW1Q8N7I0 195 aa6.65□□□□□ -1.35
HMGB1-203ENST00000341423 A8MWV9 139 aa6.65□□□□□ -1.35
HMGB1-203ENST00000341423 RPL18AQ02543 176 aaKnown RBP6.65□□□□□ -1.35
HMGB1-203ENST00000341423 TMEM88Q6PEY1 159 aa6.65□□□□□ -1.35
HMGB1-203ENST00000341423 SEC11CQ9BY50 192 aa6.65□□□□□ -1.35
HMGB1-203ENST00000341423 VCX2Q9H322 139 aa6.65□□□□□ -1.35
HMGB1-203ENST00000341423 SAV1Q9H4B6 383 aaPredicted RBP6.65□□□□□ -1.35
HMGB1-203ENST00000341423 IGKV1D-43A0A0B4J1Z2 117 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 LOC389332A0A1B0GUA5 103 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 IL7P13232 177 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 TMEM255AQ5JRV8 349 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 SEM1Q6ZVN7 128 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 RPS10P5Q9NQ39 176 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 HELZ2Q9BYK8 2649 aaKnown RBP6.64□□□□□ -1.35
HMGB1-203ENST00000341423 SIVA1O15304 175 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 DNAL4O96015 105 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 MT-ND6P03923 174 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 PLA2G1BP04054 148 aaKnown RBP6.64□□□□□ -1.35
HMGB1-203ENST00000341423 CRYGDP07320 174 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 LGALS3P17931 250 aaKnown RBP6.64□□□□□ -1.35
HMGB1-203ENST00000341423 PSMB2P49721 201 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 Q0VG73 95 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 SRSF9Q13242 221 aaKnown RBP eCLIP6.64□□□□□ -1.35
HMGB1-203ENST00000341423 MAP1LC3AQ9H492 121 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 IGLV5-52A0A0A0MRZ9 124 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 A0A1W2PP11 408 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 IGHG2P01859 326 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 ZNF876PQ49A33 203 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 MIC13Q5XKP0 118 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 RNF152Q8N8N0 203 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 TMEM204Q9BSN7 226 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 JKAMPQ9P055 326 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 COL4A1P02462 1669 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 IGKV3D-20A0A0C4DH25 116 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 C2orf70A6NJV1 201 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 TSPAN13O95857 204 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 ZNF138P52744 262 aa6.64□□□□□ -1.35
HMGB1-203ENST00000341423 TIMM17AQ99595 171 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms