RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 TEX29Q8N6K0 151 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 SIGLECL1Q8N7X8 197 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 USMG5Q96IX5 58 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 ATP6V0BQ99437 205 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 PRDM13Q9H4Q3 707 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 ZNF580Q9UK33 172 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 H7BYZ3 331 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 MRPS12O15235 138 aaKnown RBP10.36□□□□□ -0.75
HMGB1-202ENST00000339872 IGHV3-11P01762 117 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 CNN1P51911 297 aaKnown RBP10.36□□□□□ -0.75
HMGB1-202ENST00000339872 ELOBQ15370 118 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 ANAPC16Q96DE5 110 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 LINC00479Q96M42 142 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 C17orf77Q96MU5 243 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 DUX5Q96PT3 197 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 TCEAL7Q9BRU2 100 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 EPDR1Q9UM22 224 aa10.36□□□□□ -0.75
HMGB1-202ENST00000339872 TRBV19A0A075B6N1 114 aa10.35□□□□□ -0.75
HMGB1-202ENST00000339872 K7EN84 100 aa10.35□□□□□ -0.75
HMGB1-202ENST00000339872 ARL3P36405 182 aa10.35□□□□□ -0.75
HMGB1-202ENST00000339872 RPL15P61313 204 aaKnown RBP10.35□□□□□ -0.75
HMGB1-202ENST00000339872 RNF24Q9Y225 148 aa10.35□□□□□ -0.75
HMGB1-202ENST00000339872 FLNAP21333 2647 aaKnown RBP10.35□□□□□ -0.75
HMGB1-202ENST00000339872 ITPR2Q14571 2701 aa10.35□□□□□ -0.75
HMGB1-202ENST00000339872 CRYBA1P05813 215 aa10.35□□□□□ -0.75
HMGB1-202ENST00000339872 SRP14P37108 136 aaKnown RBP10.35□□□□□ -0.75
HMGB1-202ENST00000339872 KRTAP1-1Q07627 177 aa10.35□□□□□ -0.75
HMGB1-202ENST00000339872 EXOC3-AS1Q8N2X6 119 aa10.35□□□□□ -0.75
HMGB1-202ENST00000339872 C5orf17Q8NAS9 161 aa10.35□□□□□ -0.75
HMGB1-202ENST00000339872 SFRP2Q96HF1 295 aa10.35□□□□□ -0.75
HMGB1-202ENST00000339872 PRSS22Q9GZN4 317 aa10.35□□□□□ -0.75
HMGB1-202ENST00000339872 NPFFR1Q9GZQ6 430 aa10.35□□□□□ -0.75
HMGB1-202ENST00000339872 OTORQ9NRC9 128 aa10.35□□□□□ -0.75
HMGB1-202ENST00000339872 LY96Q9Y6Y9 160 aa10.35□□□□□ -0.75
HMGB1-202ENST00000339872 TRAV34A0A0B4J273 112 aa10.34□□□□□ -0.75
HMGB1-202ENST00000339872 TRBV12-3P01733 135 aa10.34□□□□□ -0.75
HMGB1-202ENST00000339872 RAB5AP20339 215 aa10.34□□□□□ -0.75
HMGB1-202ENST00000339872 S100A7P31151 101 aa10.34□□□□□ -0.75
HMGB1-202ENST00000339872 RAB9AP51151 201 aa10.34□□□□□ -0.75
HMGB1-202ENST00000339872 OR8I2Q8N0Y5 310 aa10.34□□□□□ -0.75
HMGB1-202ENST00000339872 IGF2BP2-AS1Q96M15 143 aa10.34□□□□□ -0.75
HMGB1-202ENST00000339872 CDC42EP3Q9UKI2 254 aa10.34□□□□□ -0.75
HMGB1-202ENST00000339872 TGIF2-C20orf24A0A0A6YYL0 155 aa10.34□□□□□ -0.75
HMGB1-202ENST00000339872 SLC17A3O00476 420 aa10.34□□□□□ -0.75
HMGB1-202ENST00000339872 CXCL1P09341 107 aa10.34□□□□□ -0.75
HMGB1-202ENST00000339872 RPL7P18124 248 aaKnown RBP10.34□□□□□ -0.75
HMGB1-202ENST00000339872 ZNF702PQ9H963 129 aa10.34□□□□□ -0.75
HMGB1-202ENST00000339872 A0A0G2JLM5 398 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 ISLRO14498 428 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 CD5LO43866 347 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 CD99P14209 185 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 GALR1P47211 349 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 TAS2R60P59551 318 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 UBE2G1P62253 170 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 TEX38Q6PEX7 206 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 C10orf99Q6UWK7 81 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 OR5B12Q96R08 314 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 ATG101Q9BSB4 218 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 YAE1D1Q9NRH1 226 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 MXRA5Q9NR99 2828 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP10.33□□□□□ -0.76
HMGB1-202ENST00000339872 CLPSL1A2RUU4 121 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 ZNF207O43670 478 aaKnown RBP10.33□□□□□ -0.76
HMGB1-202ENST00000339872 IGHG4P01861 327 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 OR5I1Q13606 314 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 SIGLEC15Q6ZMC9 328 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 NHLRC2Q8NBF2 726 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 OR4X2Q8NGF9 303 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 CMTM2Q8TAZ6 248 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 SGK494Q96LW2 274 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 MLXQ9UH92 298 aa10.33□□□□□ -0.76
HMGB1-202ENST00000339872 PPP1R2P9O14990 202 aa10.32□□□□□ -0.76
HMGB1-202ENST00000339872 TCRAP04437 139 aa10.32□□□□□ -0.76
HMGB1-202ENST00000339872 MGST1P10620 155 aaKnown RBP10.32□□□□□ -0.76
HMGB1-202ENST00000339872 PSMB8P28062 276 aa10.32□□□□□ -0.76
HMGB1-202ENST00000339872 METTL26Q96S19 204 aa10.32□□□□□ -0.76
HMGB1-202ENST00000339872 TLN2Q9Y4G6 2542 aa10.32□□□□□ -0.76
HMGB1-202ENST00000339872 IGHV3OR16-13A0A075B7E8 117 aa10.32□□□□□ -0.76
HMGB1-202ENST00000339872 IGHV3-74A0A0B4J1X5 117 aa10.32□□□□□ -0.76
HMGB1-202ENST00000339872 IGHV3-66A0A0C4DH42 116 aa10.32□□□□□ -0.76
HMGB1-202ENST00000339872 IGLV2-8P01709 118 aa10.32□□□□□ -0.76
HMGB1-202ENST00000339872 FOLR2P14207 255 aa10.32□□□□□ -0.76
HMGB1-202ENST00000339872 S100PP25815 95 aa10.32□□□□□ -0.76
HMGB1-202ENST00000339872 PDE6HQ13956 83 aa10.32□□□□□ -0.76
HMGB1-202ENST00000339872 OR10G8Q8NGN5 311 aa10.32□□□□□ -0.76
HMGB1-202ENST00000339872 IGHV3-49A0A0A0MS15 119 aa10.31□□□□□ -0.76
HMGB1-202ENST00000339872 BUB3O43684 328 aa10.31□□□□□ -0.76
HMGB1-202ENST00000339872 TMEM183BQ1AE95 376 aa10.31□□□□□ -0.76
HMGB1-202ENST00000339872 LYPD1Q8N2G4 141 aa10.31□□□□□ -0.76
HMGB1-202ENST00000339872 APOHP02749 345 aaPredicted RBP10.3□□□□□ -0.76
HMGB1-202ENST00000339872 PFN1P07737 140 aaKnown RBP10.3□□□□□ -0.76
HMGB1-202ENST00000339872 RPS10P46783 165 aaKnown RBP10.3□□□□□ -0.76
HMGB1-202ENST00000339872 ERVFC1-1P60608 527 aa10.3□□□□□ -0.76
HMGB1-202ENST00000339872 BAGE2Q86Y30 109 aa10.3□□□□□ -0.76
HMGB1-202ENST00000339872 AAMDCQ9H7C9 122 aa10.3□□□□□ -0.76
HMGB1-202ENST00000339872 SMAD5-AS1Q9Y6J3 95 aa10.3□□□□□ -0.76
HMGB1-202ENST00000339872 HECTD1Q9ULT8 2610 aa10.3□□□□□ -0.76
HMGB1-202ENST00000339872 AKAP9Q99996 3911 aa10.3□□□□□ -0.76
HMGB1-202ENST00000339872 SLC35B1P78383 322 aa10.3□□□□□ -0.76
HMGB1-202ENST00000339872 GOLT1AQ6ZVE7 132 aa10.3□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 52.5 ms