RNA–Protein interactions for RNA: ENST00000330334.7

HDDC3-201, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,047 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-201ENST00000330334 SLC25A39Q9BZJ4 359 aaPredicted RBP12.73□□□□□ -0.37
HDDC3-201ENST00000330334 DOK5Q9P104 306 aa12.73□□□□□ -0.37
HDDC3-201ENST00000330334 RFNGQ9Y644 331 aa12.73□□□□□ -0.37
HDDC3-201ENST00000330334 IGHV4-4A0A075B6R2 117 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 DEFB131BA0A096LNP1 70 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 TEX48A0A1B0GUV7 120 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 SMCO3A2RU48 225 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 F6UB75 175 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 H3BRN7 92 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 PLA2G10O15496 165 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 AMBPP02760 352 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 RPL7P18124 248 aaKnown RBP12.72□□□□□ -0.37
HDDC3-201ENST00000330334 RAP2BP61225 183 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 PRR20EP86478 221 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 PRR20CP86479 221 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 PRR20DP86480 221 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 PRR20BP86481 221 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 PRR20AP86496 221 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 ZBTB8BQ8NAP8 495 aaPredicted RBP12.72□□□□□ -0.37
HDDC3-201ENST00000330334 GGACTQ9BVM4 153 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 SLC35B3Q9H1N7 401 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 RNF24Q9Y225 148 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 HIGD1AQ9Y241 93 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 GOLT1BQ9Y3E0 138 aa12.72□□□□□ -0.37
HDDC3-201ENST00000330334 METTL15P1P0C7V9 234 aa12.71□□□□□ -0.37
HDDC3-201ENST00000330334 LINC00869P0C866 280 aa12.71□□□□□ -0.37
HDDC3-201ENST00000330334 FXYD7P58549 80 aa12.71□□□□□ -0.37
HDDC3-201ENST00000330334 AMTNQ6UX39 209 aa12.71□□□□□ -0.37
HDDC3-201ENST00000330334 SCRT1Q9BWW7 348 aa12.71□□□□□ -0.37
HDDC3-201ENST00000330334 LYRM1O43325 122 aa12.7□□□□□ -0.38
HDDC3-201ENST00000330334 DUSP14O95147 198 aaKnown RBP12.7□□□□□ -0.38
HDDC3-201ENST00000330334 PXDC1Q5TGL8 231 aa12.7□□□□□ -0.38
HDDC3-201ENST00000330334 TEPPQ6URK8 271 aa12.7□□□□□ -0.38
HDDC3-201ENST00000330334 C1orf158Q8N1D5 194 aa12.7□□□□□ -0.38
HDDC3-201ENST00000330334 C20orf85Q9H1P6 137 aa12.7□□□□□ -0.38
HDDC3-201ENST00000330334 GSKIPQ9P0R6 139 aa12.7□□□□□ -0.38
HDDC3-201ENST00000330334 RCL1Q9Y2P8 373 aaKnown RBP12.7□□□□□ -0.38
HDDC3-201ENST00000330334 IGHV3OR16-12A0A075B7B8 117 aa12.69□□□□□ -0.38
HDDC3-201ENST00000330334 TRAV8-2A0A0B4J237 113 aa12.69□□□□□ -0.38
HDDC3-201ENST00000330334 C7orf66A4D0T2 115 aa12.69□□□□□ -0.38
HDDC3-201ENST00000330334 CCNKO75909 580 aa12.69□□□□□ -0.38
HDDC3-201ENST00000330334 MBPP02686 304 aaPredicted RBP12.69□□□□□ -0.38
HDDC3-201ENST00000330334 OXA1LQ15070 435 aa12.69□□□□□ -0.38
HDDC3-201ENST00000330334 GSG1LQ6UXU4 331 aa12.69□□□□□ -0.38
HDDC3-201ENST00000330334 FAM210BQ96KR6 192 aa12.69□□□□□ -0.38
HDDC3-201ENST00000330334 IGF2BP2-AS1Q96M15 143 aa12.69□□□□□ -0.38
HDDC3-201ENST00000330334 MGAT4CQ9UBM8 478 aa12.69□□□□□ -0.38
HDDC3-201ENST00000330334 DKK2Q9UBU2 259 aa12.69□□□□□ -0.38
HDDC3-201ENST00000330334 DNAH6Q9C0G6 4158 aa12.69□□□□□ -0.38
HDDC3-201ENST00000330334 A0A087X0K7 114 aa12.68□□□□□ -0.38
HDDC3-201ENST00000330334 SCGB1D2O95969 90 aa12.68□□□□□ -0.38
HDDC3-201ENST00000330334 HBE1P02100 147 aa12.68□□□□□ -0.38
HDDC3-201ENST00000330334 TCRBP04435 133 aa12.68□□□□□ -0.38
HDDC3-201ENST00000330334 OR5G3P0C626 314 aa12.68□□□□□ -0.38
HDDC3-201ENST00000330334 RRAS2P62070 204 aaPredicted RBP12.68□□□□□ -0.38
HDDC3-201ENST00000330334 LINC00299Q6ZSB3 139 aa12.68□□□□□ -0.38
HDDC3-201ENST00000330334 ZNF767PQ75MW2 155 aa12.68□□□□□ -0.38
HDDC3-201ENST00000330334 NDUFAF3Q9BU61 184 aa12.68□□□□□ -0.38
HDDC3-201ENST00000330334 CNN1P51911 297 aaKnown RBP12.67□□□□□ -0.38
HDDC3-201ENST00000330334 B2MP61769 119 aa12.67□□□□□ -0.38
HDDC3-201ENST00000330334 ARL16Q0P5N6 197 aa12.67□□□□□ -0.38
HDDC3-201ENST00000330334 ZNF846Q147U1 533 aa12.67□□□□□ -0.38
HDDC3-201ENST00000330334 PATE2Q6UY27 113 aa12.67□□□□□ -0.38
HDDC3-201ENST00000330334 ZNF546Q86UE3 836 aa12.67□□□□□ -0.38
HDDC3-201ENST00000330334 CCDC32Q9BV29 185 aa12.67□□□□□ -0.38
HDDC3-201ENST00000330334 ARL6Q9H0F7 186 aa12.67□□□□□ -0.38
HDDC3-201ENST00000330334 GOSR2O14653 212 aa12.66□□□□□ -0.38
HDDC3-201ENST00000330334 EMP1P54849 157 aa12.66□□□□□ -0.38
HDDC3-201ENST00000330334 RRN3P1Q2M238 152 aa12.66□□□□□ -0.38
HDDC3-201ENST00000330334 OR11H7Q8NGC8 314 aa12.66□□□□□ -0.38
HDDC3-201ENST00000330334 ZNF431Q8TF32 576 aaPredicted RBP12.66□□□□□ -0.38
HDDC3-201ENST00000330334 UHRF2Q96PU4 802 aa12.66□□□□□ -0.38
HDDC3-201ENST00000330334 NIPSNAP3BQ9BS92 247 aa12.66□□□□□ -0.38
HDDC3-201ENST00000330334 ARV1Q9H2C2 271 aa12.66□□□□□ -0.38
HDDC3-201ENST00000330334 LOC102723971A0A1B0GUV8 181 aa12.65□□□□□ -0.38
HDDC3-201ENST00000330334 AGPAT2O15120 278 aa12.65□□□□□ -0.38
HDDC3-201ENST00000330334 MRPS12O15235 138 aaKnown RBP12.65□□□□□ -0.38
HDDC3-201ENST00000330334 P0DMU3 169 aa12.65□□□□□ -0.38
HDDC3-201ENST00000330334 FAM231AP0DMU4 169 aa12.65□□□□□ -0.38
HDDC3-201ENST00000330334 FAM231CP0DMU5 169 aa12.65□□□□□ -0.38
HDDC3-201ENST00000330334 CXCL3P19876 107 aa12.65□□□□□ -0.38
HDDC3-201ENST00000330334 FGL1Q08830 312 aa12.65□□□□□ -0.38
HDDC3-201ENST00000330334 SLC38A11Q08AI6 406 aa12.65□□□□□ -0.38
HDDC3-201ENST00000330334 FAM222AQ5U5X8 452 aa12.65□□□□□ -0.38
HDDC3-201ENST00000330334 RNF182Q8N6D2 247 aa12.65□□□□□ -0.38
HDDC3-201ENST00000330334 L7N2F9 121 aa12.64□□□□□ -0.39
HDDC3-201ENST00000330334 CRXO43186 299 aaPredicted RBP12.64□□□□□ -0.39
HDDC3-201ENST00000330334 CXCL2P19875 107 aa12.64□□□□□ -0.39
HDDC3-201ENST00000330334 VAMP2P63027 116 aa12.64□□□□□ -0.39
HDDC3-201ENST00000330334 PSG3Q16557 428 aa12.64□□□□□ -0.39
HDDC3-201ENST00000330334 IGFL4Q6B9Z1 124 aa12.64□□□□□ -0.39
HDDC3-201ENST00000330334 POM121L12Q8N7R1 296 aa12.64□□□□□ -0.39
HDDC3-201ENST00000330334 ZNF738Q8NE65 137 aa12.64□□□□□ -0.39
HDDC3-201ENST00000330334 NUDT15Q9NV35 164 aa12.64□□□□□ -0.39
HDDC3-201ENST00000330334 YTHDF2Q9Y5A9 579 aaKnown RBP12.64□□□□□ -0.39
HDDC3-201ENST00000330334 TRAV6A0A075B6T7 132 aa12.63□□□□□ -0.39
HDDC3-201ENST00000330334 TSPOP30536 169 aa12.63□□□□□ -0.39
HDDC3-201ENST00000330334 LINC00305Q7Z4B0 112 aa12.63□□□□□ -0.39
HDDC3-201ENST00000330334 C12orf45Q8N5I9 185 aaPredicted RBP12.63□□□□□ -0.39
HDDC3-201ENST00000330334 OR8A1Q8NGG7 326 aa12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 61.9 ms