RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 KRTDAPP60985 99 aa14.45□□□□□ -0.1
SHKBP1-201ENST00000291842 LINC00469Q8N7U9 141 aa14.45□□□□□ -0.1
SHKBP1-201ENST00000291842 OR2D3Q8NGH3 330 aa14.45□□□□□ -0.1
SHKBP1-201ENST00000291842 ARPC1AQ92747 370 aa14.45□□□□□ -0.1
SHKBP1-201ENST00000291842 SHANK2-AS3Q9BTD1 123 aa14.45□□□□□ -0.1
SHKBP1-201ENST00000291842 NDUFAF3Q9BU61 184 aa14.45□□□□□ -0.1
SHKBP1-201ENST00000291842 TMEM14CQ9P0S9 112 aa14.45□□□□□ -0.1
SHKBP1-201ENST00000291842 GTSF1Q8WW33 167 aa14.45□□□□□ -0.1
SHKBP1-201ENST00000291842 KCNS1Q96KK3 526 aa14.45□□□□□ -0.1
SHKBP1-201ENST00000291842 CHRDL1Q9BU40 450 aa14.45□□□□□ -0.1
SHKBP1-201ENST00000291842 COL12A1Q99715 3063 aa14.44□□□□□ -0.1
SHKBP1-201ENST00000291842 Q86TA4 180 aa14.44□□□□□ -0.1
SHKBP1-201ENST00000291842 BPIFA4PQ86YQ2 179 aa14.44□□□□□ -0.1
SHKBP1-201ENST00000291842 WIPF2Q8TF74 440 aaPredicted RBP14.44□□□□□ -0.1
SHKBP1-201ENST00000291842 PGLYRP4Q96LB8 373 aa14.44□□□□□ -0.1
SHKBP1-201ENST00000291842 TRBV19A0A075B6N1 114 aa14.44□□□□□ -0.1
SHKBP1-201ENST00000291842 H3BRN7 92 aa14.44□□□□□ -0.1
SHKBP1-201ENST00000291842 IGLV2-11P01706 119 aa14.44□□□□□ -0.1
SHKBP1-201ENST00000291842 UQCRFS1P47985 274 aa14.44□□□□□ -0.1
SHKBP1-201ENST00000291842 C1orf194Q5T5A4 169 aa14.44□□□□□ -0.1
SHKBP1-201ENST00000291842 ZNF562Q6V9R5 426 aa14.44□□□□□ -0.1
SHKBP1-201ENST00000291842 C18orf32Q8TCD1 76 aa14.44□□□□□ -0.1
SHKBP1-201ENST00000291842 DAZAP1Q96EP5 407 aaKnown RBP14.44□□□□□ -0.1
SHKBP1-201ENST00000291842 NRN1Q9NPD7 142 aa14.44□□□□□ -0.1
SHKBP1-201ENST00000291842 A0A1B0GV90 55 aa14.43□□□□□ -0.1
SHKBP1-201ENST00000291842 C19orf71A6NCJ1 209 aa14.43□□□□□ -0.1
SHKBP1-201ENST00000291842 NTF3P20783 257 aa14.43□□□□□ -0.1
SHKBP1-201ENST00000291842 Q56UQ5 140 aa14.43□□□□□ -0.1
SHKBP1-201ENST00000291842 PRSS22Q9GZN4 317 aa14.43□□□□□ -0.1
SHKBP1-201ENST00000291842 CACNA1BQ00975 2339 aa14.43□□□□□ -0.1
SHKBP1-201ENST00000291842 IGLV11-55A0A075B6I3 123 aa14.42□□□□□ -0.1
SHKBP1-201ENST00000291842 TMEM11P17152 192 aa14.42□□□□□ -0.1
SHKBP1-201ENST00000291842 OR4F17Q8NGA8 305 aa14.42□□□□□ -0.1
SHKBP1-201ENST00000291842 SMIM12Q96EX1 92 aa14.42□□□□□ -0.1
SHKBP1-201ENST00000291842 ZFHX3Q15911 3703 aa14.42□□□□□ -0.1
SHKBP1-201ENST00000291842 OR2J3O76001 311 aa14.42□□□□□ -0.1
SHKBP1-201ENST00000291842 HLA-DRB1P01911 266 aa14.42□□□□□ -0.1
SHKBP1-201ENST00000291842 FAM120AOSQ5T036 256 aa14.42□□□□□ -0.1
SHKBP1-201ENST00000291842 CCDC144NLQ6NUI1 221 aa14.42□□□□□ -0.1
SHKBP1-201ENST00000291842 RASL11AQ6T310 242 aa14.42□□□□□ -0.1
SHKBP1-201ENST00000291842 F8W735 103 aaPredicted RBP14.41□□□□□ -0.1
SHKBP1-201ENST00000291842 M0R3E3 92 aa14.41□□□□□ -0.1
SHKBP1-201ENST00000291842 NDUFB8O95169 186 aa14.41□□□□□ -0.1
SHKBP1-201ENST00000291842 IGLC2P0DOY2 106 aa14.41□□□□□ -0.1
SHKBP1-201ENST00000291842 PAM16Q9Y3D7 125 aa14.41□□□□□ -0.1
SHKBP1-201ENST00000291842 SPTAN1Q13813 2472 aaKnown RBP14.41□□□□□ -0.1
SHKBP1-201ENST00000291842 OR2T8A6NH00 312 aa14.41□□□□□ -0.1
SHKBP1-201ENST00000291842 A8MWL6 223 aa14.41□□□□□ -0.1
SHKBP1-201ENST00000291842 ZNF324O75467 553 aaPredicted RBP14.41□□□□□ -0.1
SHKBP1-201ENST00000291842 COL8A1P27658 744 aa14.41□□□□□ -0.1
SHKBP1-201ENST00000291842 IGHV3OR16-8A0A075B7F1 116 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 KIR2DL5BA0A0G2JN68 375 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 KIR2DL5BA0A0G2JPC4 375 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 A0A1B0GXF2 115 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 WI2-2373I1.2A0A1W2PRP0 233 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 NPIPB5A8MRT5 1133 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 C19orf84I3L1E1 186 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 MFAP4P55083 255 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 SIGLEC15Q6ZMC9 328 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 C1orf122Q6ZSJ8 110 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 KIR2DL5AQ8N109 375 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 SIRPDQ9H106 197 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 VPS13CQ709C8 3753 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 IGHV3-35A0A0C4DH35 117 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 Q8N6K4 173 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 LPAR2Q9HBW0 351 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 ZNF492Q9P255 531 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 CELSR1Q9NYQ6 3014 aa14.4□□□□□ -0.1
SHKBP1-201ENST00000291842 HBBP68871 147 aa14.39□□□□□ -0.11
SHKBP1-201ENST00000291842 TEX43Q6ZNM6 134 aa14.39□□□□□ -0.11
SHKBP1-201ENST00000291842 TTC9CQ8N5M4 171 aa14.39□□□□□ -0.11
SHKBP1-201ENST00000291842 ALKBH7Q9BT30 221 aaPredicted RBP14.39□□□□□ -0.11
SHKBP1-201ENST00000291842 C21orf62Q9NYP8 219 aa14.39□□□□□ -0.11
SHKBP1-201ENST00000291842 ZNF785A8K8V0 405 aa14.39□□□□□ -0.11
SHKBP1-201ENST00000291842 EREGO14944 169 aa14.39□□□□□ -0.11
SHKBP1-201ENST00000291842 MRPS12O15235 138 aaKnown RBP14.39□□□□□ -0.11
SHKBP1-201ENST00000291842 EGR2P11161 476 aaPredicted RBP14.39□□□□□ -0.11
SHKBP1-201ENST00000291842 FOXA3P55318 350 aaPredicted RBP14.39□□□□□ -0.11
SHKBP1-201ENST00000291842 NIT1Q86X76 327 aa14.39□□□□□ -0.11
SHKBP1-201ENST00000291842 ZC2HC1AQ96GY0 325 aa14.39□□□□□ -0.11
SHKBP1-201ENST00000291842 ZNF414Q96IQ9 312 aa14.39□□□□□ -0.11
SHKBP1-201ENST00000291842 BPESC1Q9GZL8 116 aa14.39□□□□□ -0.11
SHKBP1-201ENST00000291842 IGHV7-81A0A0B4J1V7 117 aa14.38□□□□□ -0.11
SHKBP1-201ENST00000291842 DIRC3C9JPN6 131 aa14.38□□□□□ -0.11
SHKBP1-201ENST00000291842 MINOS1Q5TGZ0 78 aa14.38□□□□□ -0.11
SHKBP1-201ENST00000291842 ATP5L2Q7Z4Y8 100 aa14.38□□□□□ -0.11
SHKBP1-201ENST00000291842 Q8N976 141 aa14.38□□□□□ -0.11
SHKBP1-201ENST00000291842 MINOS1-NBL1R4GNA1 71 aa14.38□□□□□ -0.11
SHKBP1-201ENST00000291842 GNLYP22749 145 aa14.37□□□□□ -0.11
SHKBP1-201ENST00000291842 RNASEKQ6P5S7 137 aaKnown RBP14.37□□□□□ -0.11
SHKBP1-201ENST00000291842 ITLN2Q8WWU7 325 aaPredicted RBP14.37□□□□□ -0.11
SHKBP1-201ENST00000291842 VAMP8Q9BV40 100 aa14.37□□□□□ -0.11
SHKBP1-201ENST00000291842 TRAV30A0A087WSZ9 112 aa14.37□□□□□ -0.11
SHKBP1-201ENST00000291842 IGHV2-70DA0A0C4DH43 119 aa14.37□□□□□ -0.11
SHKBP1-201ENST00000291842 SH2D7A6NKC9 451 aaPredicted RBP14.37□□□□□ -0.11
SHKBP1-201ENST00000291842 M0QZ24 198 aa14.37□□□□□ -0.11
SHKBP1-201ENST00000291842 EFNA4P52798 201 aa14.37□□□□□ -0.11
SHKBP1-201ENST00000291842 RBPMS2Q6ZRY4 209 aaKnown RBP14.37□□□□□ -0.11
SHKBP1-201ENST00000291842 Q8N9W7 124 aa14.37□□□□□ -0.11
SHKBP1-201ENST00000291842 PSG8Q9UQ74 426 aa14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 305 ms