RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 THYN1Q9P016 225 aa12.89□□□□□ -0.35
SDCBP-201ENST00000260130 F11RQ9Y624 299 aaKnown RBP12.89□□□□□ -0.35
SDCBP-201ENST00000260130 PHOX2AO14813 284 aa12.88□□□□□ -0.35
SDCBP-201ENST00000260130 DLX4Q92988 240 aaPredicted RBP12.88□□□□□ -0.35
SDCBP-201ENST00000260130 SLC25A22Q9H936 323 aa12.88□□□□□ -0.35
SDCBP-201ENST00000260130 PLEKHA3Q9HB20 300 aa12.88□□□□□ -0.35
SDCBP-201ENST00000260130 C17orf112F2Z3M2 114 aa12.88□□□□□ -0.35
SDCBP-201ENST00000260130 FABP4P15090 132 aa12.88□□□□□ -0.35
SDCBP-201ENST00000260130 BEAN1Q3B7T3 259 aa12.88□□□□□ -0.35
SDCBP-201ENST00000260130 PDZD11Q5EBL8 140 aa12.88□□□□□ -0.35
SDCBP-201ENST00000260130 FFAR4Q5NUL3 377 aa12.88□□□□□ -0.35
SDCBP-201ENST00000260130 PYGO2Q9BRQ0 406 aa12.88□□□□□ -0.35
SDCBP-201ENST00000260130 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.87□□□□□ -0.35
SDCBP-201ENST00000260130 PMS2P5A8MQ11 134 aa12.87□□□□□ -0.35
SDCBP-201ENST00000260130 TRBV12-3P01733 135 aa12.87□□□□□ -0.35
SDCBP-201ENST00000260130 PFN1P07737 140 aaKnown RBP12.87□□□□□ -0.35
SDCBP-201ENST00000260130 HOXD3P31249 432 aaPredicted RBP12.87□□□□□ -0.35
SDCBP-201ENST00000260130 ERHP84090 104 aaKnown RBP12.87□□□□□ -0.35
SDCBP-201ENST00000260130 AARDQ4LEZ3 155 aa12.87□□□□□ -0.35
SDCBP-201ENST00000260130 SPINK9Q5DT21 86 aa12.87□□□□□ -0.35
SDCBP-201ENST00000260130 OR1L6Q8NGR2 347 aa12.87□□□□□ -0.35
SDCBP-201ENST00000260130 RPUSD4Q96CM3 377 aaKnown RBP12.87□□□□□ -0.35
SDCBP-201ENST00000260130 H7BYZ3 331 aa12.87□□□□□ -0.35
SDCBP-201ENST00000260130 OVOL1O14753 267 aa12.87□□□□□ -0.35
SDCBP-201ENST00000260130 RPL23P62829 140 aaKnown RBP12.87□□□□□ -0.35
SDCBP-201ENST00000260130 VWC2Q2TAL6 325 aa12.87□□□□□ -0.35
SDCBP-201ENST00000260130 KPRPQ5T749 579 aaPredicted RBP12.87□□□□□ -0.35
SDCBP-201ENST00000260130 ANAPC16Q96DE5 110 aa12.87□□□□□ -0.35
SDCBP-201ENST00000260130 PARLQ9H300 379 aa12.87□□□□□ -0.35
SDCBP-201ENST00000260130 MFAP2P55001 183 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 DEFA6Q01524 100 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 LINC00469Q8N7U9 141 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 OR1P1Q8NH06 330 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 OR4X1Q8NH49 305 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 EEF1AKMT3Q96AZ1 226 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 NPCDR1Q9BY65 106 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 S4R3C0 116 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 SMCO3A2RU48 225 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 INS-IGF2F8WCM5 200 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 LY86O95711 162 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 RD3LP0DJH9 198 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 GALR1P47211 349 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 SPCS3P61009 180 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 TMEM183AQ8IXX5 376 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 OR51G1Q8NGK1 321 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 OR52E5Q8NH55 327 aa12.86□□□□□ -0.35
SDCBP-201ENST00000260130 PACRGQ96M98 296 aaPredicted RBP12.86□□□□□ -0.35
SDCBP-201ENST00000260130 PPP5D1E7EU14 171 aa12.85□□□□□ -0.35
SDCBP-201ENST00000260130 HMGB3O15347 200 aaKnown RBP12.85□□□□□ -0.35
SDCBP-201ENST00000260130 IGHV3-23P01764 117 aa12.85□□□□□ -0.35
SDCBP-201ENST00000260130 ACOT6Q3I5F7 207 aaPredicted RBP12.85□□□□□ -0.35
SDCBP-201ENST00000260130 CDPF1Q6NVV7 123 aa12.85□□□□□ -0.35
SDCBP-201ENST00000260130 ZNF114Q8NC26 417 aa12.85□□□□□ -0.35
SDCBP-201ENST00000260130 RAB24Q969Q5 203 aa12.85□□□□□ -0.35
SDCBP-201ENST00000260130 TRBV7-1A0A0A6YYK4 115 aa12.84□□□□□ -0.35
SDCBP-201ENST00000260130 KLF5Q13887 457 aaPredicted RBP12.84□□□□□ -0.35
SDCBP-201ENST00000260130 C9orf66Q5T8R8 295 aa12.84□□□□□ -0.35
SDCBP-201ENST00000260130 CLEC19AQ6UXS0 136 aa12.84□□□□□ -0.35
SDCBP-201ENST00000260130 CCDC140Q96MF4 163 aa12.84□□□□□ -0.35
SDCBP-201ENST00000260130 HIST1H2BLQ99880 126 aa12.84□□□□□ -0.35
SDCBP-201ENST00000260130 ENY2Q9NPA8 101 aa12.84□□□□□ -0.35
SDCBP-201ENST00000260130 BMPR1BO00238 502 aa12.84□□□□□ -0.35
SDCBP-201ENST00000260130 RPEL1Q2QD12 228 aa12.84□□□□□ -0.35
SDCBP-201ENST00000260130 PDLIM3Q53GG5 364 aaPredicted RBP12.84□□□□□ -0.35
SDCBP-201ENST00000260130 VN1R17PQ8TDU5 208 aa12.84□□□□□ -0.35
SDCBP-201ENST00000260130 WIPF1O43516 503 aa12.83□□□□□ -0.36
SDCBP-201ENST00000260130 CDC34P49427 236 aaPredicted RBP12.83□□□□□ -0.36
SDCBP-201ENST00000260130 FAM3BP58499 235 aaPredicted RBP12.83□□□□□ -0.36
SDCBP-201ENST00000260130 PAGE4O60829 102 aa12.83□□□□□ -0.36
SDCBP-201ENST00000260130 CLEC3BP05452 202 aa12.83□□□□□ -0.36
SDCBP-201ENST00000260130 PKIAP61925 76 aa12.83□□□□□ -0.36
SDCBP-201ENST00000260130 ZNF502Q8TBZ5 544 aa12.83□□□□□ -0.36
SDCBP-201ENST00000260130 TSTD3H0UI37 97 aa12.82□□□□□ -0.36
SDCBP-201ENST00000260130 GGCTO75223 188 aaKnown RBP12.82□□□□□ -0.36
SDCBP-201ENST00000260130 SYNJ2BPP57105 145 aa12.82□□□□□ -0.36
SDCBP-201ENST00000260130 RPP30P78346 268 aaKnown RBP12.82□□□□□ -0.36
SDCBP-201ENST00000260130 COA6Q5JTJ3 125 aaKnown RBP12.82□□□□□ -0.36
SDCBP-201ENST00000260130 ACY3Q96HD9 319 aa12.82□□□□□ -0.36
SDCBP-201ENST00000260130 K7EIM0 57 aa12.81□□□□□ -0.36
SDCBP-201ENST00000260130 ARL3P36405 182 aa12.81□□□□□ -0.36
SDCBP-201ENST00000260130 INSL3P51460 131 aa12.81□□□□□ -0.36
SDCBP-201ENST00000260130 SUB1P53999 127 aaKnown RBP eCLIP12.81□□□□□ -0.362e-6■■■■□ 20.8
SDCBP-201ENST00000260130 GAMTQ14353 236 aa12.81□□□□□ -0.36
SDCBP-201ENST00000260130 KCNIP4Q6PIL6 250 aa12.81□□□□□ -0.36
SDCBP-201ENST00000260130 RNASEH2CQ8TDP1 164 aaKnown RBP12.81□□□□□ -0.36
SDCBP-201ENST00000260130 GATAD1Q8WUU5 269 aa12.81□□□□□ -0.36
SDCBP-201ENST00000260130 MISP3Q96FF7 219 aa12.81□□□□□ -0.36
SDCBP-201ENST00000260130 DNAH3Q8TD57 4116 aa12.81□□□□□ -0.36
SDCBP-201ENST00000260130 IGHV3-21A0A0B4J1V1 117 aa12.81□□□□□ -0.36
SDCBP-201ENST00000260130 C11orf94C9JXX5 98 aa12.81□□□□□ -0.36
SDCBP-201ENST00000260130 PDE6DO43924 150 aa12.81□□□□□ -0.36
SDCBP-201ENST00000260130 IFNA10P01566 189 aa12.81□□□□□ -0.36
SDCBP-201ENST00000260130 EGFEM1PQ0D2K5 195 aa12.81□□□□□ -0.36
SDCBP-201ENST00000260130 ELOVL1Q9BW60 279 aa12.81□□□□□ -0.36
SDCBP-201ENST00000260130 HEYLQ9NQ87 328 aaPredicted RBP12.81□□□□□ -0.36
SDCBP-201ENST00000260130 C15orf62A8K5M9 175 aa12.8□□□□□ -0.36
SDCBP-201ENST00000260130 MPDU1O75352 247 aa12.8□□□□□ -0.36
SDCBP-201ENST00000260130 SAP30O75446 220 aa12.8□□□□□ -0.36
SDCBP-201ENST00000260130 RNASE2P10153 161 aaKnown RBP12.8□□□□□ -0.36
SDCBP-201ENST00000260130 TMEM170AQ8WVE7 144 aa12.8□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms