RNA–Protein interactions for RNA: ENST00000250448.2

FOXA1-201, Transcript of forkhead box A1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene FOXA1, Length 2,862 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1-201ENST00000250448 PDPNQ86YL7 162 aa13.57□□□□□ -0.24
FOXA1-201ENST00000250448 KIR3DL3Q8N743 410 aa13.57□□□□□ -0.24
FOXA1-201ENST00000250448 MRPL36Q9P0J6 103 aaKnown RBP13.57□□□□□ -0.24
FOXA1-201ENST00000250448 CCL25O15444 150 aa13.56□□□□□ -0.24
FOXA1-201ENST00000250448 PRB3Q04118 309 aaPredicted RBP13.56□□□□□ -0.24
FOXA1-201ENST00000250448 C11orf71Q6IPW1 123 aa13.56□□□□□ -0.24
FOXA1-201ENST00000250448 ZNF843Q8N446 348 aa13.56□□□□□ -0.24
FOXA1-201ENST00000250448 URB1-AS1Q96HZ7 61 aa13.56□□□□□ -0.24
FOXA1-201ENST00000250448 EPDR1Q9UM22 224 aa13.56□□□□□ -0.24
FOXA1-201ENST00000250448 COX11Q9Y6N1 276 aa13.56□□□□□ -0.24
FOXA1-201ENST00000250448 TOMM40O96008 361 aa13.56□□□□□ -0.24
FOXA1-201ENST00000250448 PPBPP02775 128 aa13.56□□□□□ -0.24
FOXA1-201ENST00000250448 SUB1P53999 127 aaKnown RBP eCLIP13.56□□□□□ -0.24
FOXA1-201ENST00000250448 Q6ZVH6 145 aa13.56□□□□□ -0.24
FOXA1-201ENST00000250448 OR4A5Q8NH83 315 aa13.56□□□□□ -0.24
FOXA1-201ENST00000250448 M0QZ24 198 aa13.55□□□□□ -0.24
FOXA1-201ENST00000250448 TNFRSF13BO14836 293 aaPredicted RBP13.55□□□□□ -0.24
FOXA1-201ENST00000250448 NDUFB3O43676 98 aa13.55□□□□□ -0.24
FOXA1-201ENST00000250448 DLX1P56177 255 aa13.55□□□□□ -0.24
FOXA1-201ENST00000250448 HBBP68871 147 aa13.55□□□□□ -0.24
FOXA1-201ENST00000250448 TCF24Q7RTU0 167 aa13.55□□□□□ -0.24
FOXA1-201ENST00000250448 OR2D3Q8NGH3 330 aa13.55□□□□□ -0.24
FOXA1-201ENST00000250448 VSTM2AQ8TAG5 236 aa13.55□□□□□ -0.24
FOXA1-201ENST00000250448 ZNF596Q8TC21 504 aa13.55□□□□□ -0.24
FOXA1-201ENST00000250448 SGK494Q96LW2 274 aa13.55□□□□□ -0.24
FOXA1-201ENST00000250448 PRR31Q5SQ13 230 aa13.55□□□□□ -0.24
FOXA1-201ENST00000250448 FAM120AOSQ5T036 256 aa13.55□□□□□ -0.24
FOXA1-201ENST00000250448 OR4F17Q8NGA8 305 aa13.55□□□□□ -0.24
FOXA1-201ENST00000250448 BLNKQ8WV28 456 aa13.55□□□□□ -0.24
FOXA1-201ENST00000250448 SMIM12Q96EX1 92 aa13.55□□□□□ -0.24
FOXA1-201ENST00000250448 TMEM70Q9BUB7 260 aa13.55□□□□□ -0.24
FOXA1-201ENST00000250448 RPP21Q9H633 154 aaKnown RBP13.55□□□□□ -0.24
FOXA1-201ENST00000250448 NAV3Q8IVL0 2385 aa13.54□□□□□ -0.24
FOXA1-201ENST00000250448 FAM162BQ5T6X4 162 aa13.54□□□□□ -0.24
FOXA1-201ENST00000250448 TMEM200BQ69YZ2 307 aa13.54□□□□□ -0.24
FOXA1-201ENST00000250448 ZNF738Q8NE65 137 aa13.54□□□□□ -0.24
FOXA1-201ENST00000250448 PERPQ96FX8 193 aa13.54□□□□□ -0.24
FOXA1-201ENST00000250448 RAB1BQ9H0U4 201 aa13.54□□□□□ -0.24
FOXA1-201ENST00000250448 IGLC7A0M8Q6 106 aa13.54□□□□□ -0.24
FOXA1-201ENST00000250448 STXBP6Q8NFX7 210 aa13.54□□□□□ -0.24
FOXA1-201ENST00000250448 OR4C13Q8NGP0 309 aa13.54□□□□□ -0.24
FOXA1-201ENST00000250448 GPR82Q96P67 336 aa13.54□□□□□ -0.24
FOXA1-201ENST00000250448 KLF12Q9Y4X4 402 aa13.54□□□□□ -0.24
FOXA1-201ENST00000250448 SVEP1Q4LDE5 3571 aa13.54□□□□□ -0.24
FOXA1-201ENST00000250448 PGPA6NDG6 321 aa13.54□□□□□ -0.24
FOXA1-201ENST00000250448 SH2D7A6NKC9 451 aaPredicted RBP13.54□□□□□ -0.24
FOXA1-201ENST00000250448 MOSP00540 346 aa13.54□□□□□ -0.24
FOXA1-201ENST00000250448 LRRC10Q5BKY1 277 aa13.54□□□□□ -0.24
FOXA1-201ENST00000250448 VPS13CQ709C8 3753 aa13.53□□□□□ -0.24
FOXA1-201ENST00000250448 UBR5O95071 2799 aaPredicted RBP13.53□□□□□ -0.24
FOXA1-201ENST00000250448 ORM2P19652 201 aa13.53□□□□□ -0.24
FOXA1-201ENST00000250448 MEF2CQ06413 473 aaPredicted RBP13.53□□□□□ -0.24
FOXA1-201ENST00000250448 UBE2V1Q13404 147 aa13.53□□□□□ -0.24
FOXA1-201ENST00000250448 MLST8Q9BVC4 326 aa13.53□□□□□ -0.24
FOXA1-201ENST00000250448 IGLV2-23P01705 113 aa13.52□□□□□ -0.24
FOXA1-201ENST00000250448 CT83Q5H943 113 aa13.52□□□□□ -0.24
FOXA1-201ENST00000250448 LINC00322Q6ZN03 302 aaPredicted RBP13.52□□□□□ -0.24
FOXA1-201ENST00000250448 OR1B1Q8NGR6 318 aa13.52□□□□□ -0.24
FOXA1-201ENST00000250448 OR4C46A6NHA9 309 aa13.52□□□□□ -0.25
FOXA1-201ENST00000250448 A8MWL6 223 aa13.52□□□□□ -0.25
FOXA1-201ENST00000250448 K7EP13 123 aa13.52□□□□□ -0.25
FOXA1-201ENST00000250448 DIAPH2-AS1Q14236 149 aa13.52□□□□□ -0.25
FOXA1-201ENST00000250448 OR10X1Q8NGY0 326 aa13.52□□□□□ -0.25
FOXA1-201ENST00000250448 PRSS22Q9GZN4 317 aa13.52□□□□□ -0.25
FOXA1-201ENST00000250448 C1RLQ9NZP8 487 aa13.52□□□□□ -0.25
FOXA1-201ENST00000250448 ZNF492Q9P255 531 aa13.52□□□□□ -0.25
FOXA1-201ENST00000250448 SOX21Q9Y651 276 aaPredicted RBP13.52□□□□□ -0.25
FOXA1-201ENST00000250448 A0A1W2PPI3 338 aa13.51□□□□□ -0.25
FOXA1-201ENST00000250448 FOXA3P55318 350 aaPredicted RBP13.51□□□□□ -0.25
FOXA1-201ENST00000250448 GTSF1Q8WW33 167 aa13.51□□□□□ -0.25
FOXA1-201ENST00000250448 CSMD2Q7Z408 3487 aa13.51□□□□□ -0.25
FOXA1-201ENST00000250448 P01737 135 aa13.51□□□□□ -0.25
FOXA1-201ENST00000250448 CHCHD1Q96BP2 118 aaKnown RBP13.51□□□□□ -0.25
FOXA1-201ENST00000250448 FMC1Q96HJ9 113 aa13.51□□□□□ -0.25
FOXA1-201ENST00000250448 WASHC3Q9Y3C0 194 aa13.51□□□□□ -0.25
FOXA1-201ENST00000250448 IGHV1-24A0A0C4DH33 117 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 NBEAP1P0C6P0 100 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 FAM71F2Q6NXP2 309 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 PRSS57Q6UWY2 283 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 DTX2Q86UW9 622 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 C5orf17Q8NAS9 161 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 ST6GALNAC6Q969X2 333 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 PGLYRP4Q96LB8 373 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 WNK2Q9Y3S1 2297 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 C19orf71A6NCJ1 209 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 CRXO43186 299 aaPredicted RBP13.5□□□□□ -0.25
FOXA1-201ENST00000250448 CD24P25063 80 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 SHISA2Q6UWI4 295 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 ST20Q9HBF5 79 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 TPSG1Q9NRR2 321 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 LTAP01374 205 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 RUSC1-AS1Q66K80 236 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 LINC00173Q6ZV60 143 aa13.5□□□□□ -0.25
FOXA1-201ENST00000250448 CELSR2Q9HCU4 2923 aa13.49□□□□□ -0.25
FOXA1-201ENST00000250448 LOC102724200A0A096LPH7 203 aaPredicted RBP13.49□□□□□ -0.25
FOXA1-201ENST00000250448 SYS1-DBNDD2H3BUS1 97 aa13.49□□□□□ -0.25
FOXA1-201ENST00000250448 GP9P14770 177 aa13.49□□□□□ -0.25
FOXA1-201ENST00000250448 VMA21Q3ZAQ7 101 aa13.49□□□□□ -0.25
FOXA1-201ENST00000250448 TMEM186Q96B77 213 aa13.49□□□□□ -0.25
FOXA1-201ENST00000250448 TRGV9Q99603 122 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms