RNA–Protein interactions for RNA: ENST00000635120.1

CSMD1-218, Transcript of CUB and Sushi multiple domains 1, human

APPRIS P2 TSL 5 BASIC

Gene CSMD1, Length 11,737 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CSMD1-218	ENST00000635120	CCT6B	Q92526	530 aa		10.21	□□□□□ -0.77
CSMD1-218	ENST00000635120	MCM9	Q9NXL9	1143 aa		10.21	□□□□□ -0.77
CSMD1-218	ENST00000635120	SP4	Q02446	784 aa		10.21	□□□□□ -0.77
CSMD1-218	ENST00000635120	TRAF5	O00463	557 aa		10.21	□□□□□ -0.77
CSMD1-218	ENST00000635120	TUBB	P07437	444 aa		10.21	□□□□□ -0.77
CSMD1-218	ENST00000635120	CLUL1	Q15846	466 aa		10.21	□□□□□ -0.77
CSMD1-218	ENST00000635120	JAG2	Q9Y219	1238 aa		10.21	□□□□□ -0.77
CSMD1-218	ENST00000635120		A0A1B0GVL5	298 aa		10.21	□□□□□ -0.77
CSMD1-218	ENST00000635120	RNF113A	O15541	343 aa	Known RBP	10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	C8orf34	Q49A92	452 aa		10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	SMAP1	Q8IYB5	467 aa	Predicted RBP	10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	UBL4B	Q8N7F7	174 aa		10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	VEZT	Q9HBM0	779 aa		10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	PKD2L1	Q9P0L9	805 aa		10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	PLCG2	P16885	1265 aa		10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	ATP6V1A	P38606	617 aa		10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	PPARD	Q03181	441 aa		10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	HAUS7	Q99871	368 aa		10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	CCDC62	Q6P9F0	684 aa		10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	MRRF	Q96E11	262 aa	Known RBP	10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	KIAA0586	Q9BVV6	1533 aa		10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	ERCC5	P28715	1186 aa	Predicted RBP	10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	BIRC3	Q13489	604 aa		10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	C8orf74	Q6P047	294 aa		10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	COPS6	Q7L5N1	327 aa		10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	C16orf71	Q8IYS4	520 aa	Predicted RBP	10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	LEO1	Q8WVC0	666 aa	Predicted RBP	10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	SOS1	Q07889	1333 aa	Predicted RBP	10.21	□□□□□ -0.78
CSMD1-218	ENST00000635120	HGS	O14964	777 aa	Predicted RBP	10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	IRX5	P78411	483 aa	Predicted RBP	10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	CHRNA2	Q15822	529 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	GOLGA6C	A6NDK9	693 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	GOLGA6D	P0CG33	693 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	GOLGA6A	Q9NYA3	693 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120		A0A1B0GUL7	405 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	HARS	P12081	509 aa	Known RBP	10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	CLNS1A	P54105	237 aa	Known RBP	10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	LONRF3	Q496Y0	759 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	OGFOD1	Q8N543	542 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	KIFAP3	Q92845	792 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120		B4DLN1	442 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	KIF3C	O14782	793 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	PARP1	P09874	1014 aa	Known RBP	10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	RPL13	P26373	211 aa	Known RBP	10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	MRPL12	P52815	198 aa	Known RBP	10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	GKAP1	Q5VSY0	366 aa	Predicted RBP	10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	CEP128	Q6ZU80	1094 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	CERS3	Q8IU89	383 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	PPFIBP2	Q8ND30	876 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	ZRANB1	Q9UGI0	708 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	ZNF131	P52739	623 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	BACH1	O14867	736 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	KRT9	P35527	623 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	DHX32	Q7L7V1	743 aa	Known RBP	10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	FMNL3	Q8IVF7	1028 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	CCDC170	Q8IYT3	715 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	NDUFAB1	O14561	156 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	MYL5	Q02045	173 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	SMC5	Q8IY18	1101 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	CACNA2D3	Q8IZS8	1091 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	MCUR1	Q96AQ8	359 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	CSRNP2	Q9H175	543 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	SARNP	P82979	210 aa	Known RBP	10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	SLC39A6	Q13433	755 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	WDR44	Q5JSH3	913 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	MRPL50	Q8N5N7	158 aa	Known RBP	10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	FANCA	O15360	1455 aa		10.2	□□□□□ -0.78
CSMD1-218	ENST00000635120	TTC36	A6NLP5	189 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	ALDH1L1	O75891	902 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	ATP8B2	P98198	1209 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	ELF2	Q15723	593 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	NUF2	Q9BZD4	464 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	BIVM-ERCC5	R4GMW8	1640 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	U2AF2	P26368	475 aa	Known RBP eCLIP	10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	ZNF174	Q15697	407 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	VPS52	Q8N1B4	723 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	NOX5	Q96PH1	765 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	VCX3B	Q9H321	246 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	TAF12	Q16514	161 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	CYP26C1	Q6V0L0	522 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	KSR2	Q6VAB6	950 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	C17orf53	Q8N3J3	647 aa	Predicted RBP	10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	STX10	O60499	249 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	ERO1A	Q96HE7	468 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	RABEP2	Q9H5N1	569 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	NEDD9	Q14511	834 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	TSNAXIP1	Q2TAA8	658 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	LMBR1L	Q6UX01	489 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	HDAC9	Q9UKV0	1011 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	ERCC6L	Q2NKX8	1250 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	NOC4L	Q9BVI4	516 aa	Known RBP	10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120		I3L4J1	428 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	CCNT1	O60563	726 aa	Known RBP	10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	RBM28	Q9NW13	759 aa	Known RBP	10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	CHMP2A	O43633	222 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	ITIH3	Q06033	890 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	KRT28	Q7Z3Y7	464 aa		10.19	□□□□□ -0.78
CSMD1-218	ENST00000635120	GOLGA6B	A6NDN3	693 aa		10.18	□□□□□ -0.78
CSMD1-218	ENST00000635120	TFCP2	Q12800	502 aa		10.18	□□□□□ -0.78
CSMD1-218	ENST00000635120	PPP1R21	Q6ZMI0	780 aa		10.18	□□□□□ -0.78

Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms