RNA–Protein interactions for RNA: ENST00000617445.4

CCDC28A-203, Transcript of coiled-coil domain containing 28A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28A, Length 1,240 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-203ENST00000617445 FAM151AQ8WW52 585 aa23.57■■□□□ 1.36
CCDC28A-203ENST00000617445 ZBTB4Q9P1Z0 1013 aaPredicted RBP23.57■■□□□ 1.36
CCDC28A-203ENST00000617445 OTOFQ9HC10 1997 aa23.56■■□□□ 1.36
CCDC28A-203ENST00000617445 PNMA6EA0A0J9YXQ4 647 aa23.56■■□□□ 1.36
CCDC28A-203ENST00000617445 TESPA1A2RU30 521 aaPredicted RBP23.56■■□□□ 1.36
CCDC28A-203ENST00000617445 OPTNQ96CV9 577 aa23.56■■□□□ 1.36
CCDC28A-203ENST00000617445 ELP3Q9H9T3 547 aa23.56■■□□□ 1.36
CCDC28A-203ENST00000617445 FKTNO75072 461 aa23.55■■□□□ 1.36
CCDC28A-203ENST00000617445 RASGRF1Q13972 1273 aa23.55■■□□□ 1.36
CCDC28A-203ENST00000617445 DIXDC1Q155Q3 683 aa23.55■■□□□ 1.36
CCDC28A-203ENST00000617445 CDC42EP5Q6NZY7 148 aa23.55■■□□□ 1.36
CCDC28A-203ENST00000617445 NEUROD6Q96NK8 337 aa23.55■■□□□ 1.36
CCDC28A-203ENST00000617445 MYH2Q9UKX2 1941 aa23.55■■□□□ 1.36
CCDC28A-203ENST00000617445 GJA5P36382 358 aa23.54■■□□□ 1.36
CCDC28A-203ENST00000617445 RGS19P49795 217 aa23.54■■□□□ 1.36
CCDC28A-203ENST00000617445 ATP8B2P98198 1209 aa23.54■■□□□ 1.36
CCDC28A-203ENST00000617445 VGLL4Q14135 290 aa23.54■■□□□ 1.36
CCDC28A-203ENST00000617445 POLA2Q14181 598 aa23.54■■□□□ 1.36
CCDC28A-203ENST00000617445 GORABQ5T7V8 394 aa23.54■■□□□ 1.36
CCDC28A-203ENST00000617445 FAM163AQ96GL9 167 aaPredicted RBP23.54■■□□□ 1.36
CCDC28A-203ENST00000617445 AK9Q5TCS8 1911 aa23.53■■□□□ 1.36
CCDC28A-203ENST00000617445 IGF2BP3O00425 579 aaKnown RBP eCLIP23.53■■□□□ 1.36
CCDC28A-203ENST00000617445 GTF2A2P52657 109 aa23.53■■□□□ 1.36
CCDC28A-203ENST00000617445 SSH3Q8TE77 659 aa23.53■■□□□ 1.36
CCDC28A-203ENST00000617445 ZNF341Q9BYN7 854 aa23.53■■□□□ 1.36
CCDC28A-203ENST00000617445 USP40Q9NVE5 1235 aa23.53■■□□□ 1.36
CCDC28A-203ENST00000617445 ERO1BQ86YB8 467 aa23.52■■□□□ 1.36
CCDC28A-203ENST00000617445 DZIP1Q86YF9 867 aaKnown RBP23.52■■□□□ 1.36
CCDC28A-203ENST00000617445 ITPRIPQ8IWB1 547 aa23.52■■□□□ 1.36
CCDC28A-203ENST00000617445 MS4A4AQ96JQ5 239 aa23.52■■□□□ 1.36
CCDC28A-203ENST00000617445 WRNIP1Q96S55 665 aa23.52■■□□□ 1.36
CCDC28A-203ENST00000617445 GPR108Q9NPR9 543 aa23.52■■□□□ 1.36
CCDC28A-203ENST00000617445 ABCF2Q9UG63 623 aa23.52■■□□□ 1.36
CCDC28A-203ENST00000617445 GAKO14976 1311 aa23.52■■□□□ 1.36
CCDC28A-203ENST00000617445 SPDYE5A6NIY4 337 aa23.51■■□□□ 1.35
CCDC28A-203ENST00000617445 ZBTB7BO15156 539 aaPredicted RBP23.51■■□□□ 1.35
CCDC28A-203ENST00000617445 UQCRFS1P1P0C7P4 283 aa23.5■■□□□ 1.35
CCDC28A-203ENST00000617445 MS4A1P11836 297 aa23.5■■□□□ 1.35
CCDC28A-203ENST00000617445 ERICH6Q7L0X2 663 aa23.5■■□□□ 1.35
CCDC28A-203ENST00000617445 IDI2Q9BXS1 227 aa23.5■■□□□ 1.35
CCDC28A-203ENST00000617445 R3HDMLQ9H3Y0 253 aa23.5■■□□□ 1.35
CCDC28A-203ENST00000617445 ENTPD3O75355 529 aa23.49■■□□□ 1.35
CCDC28A-203ENST00000617445 ARID4AP29374 1257 aaPredicted RBP23.49■■□□□ 1.35
CCDC28A-203ENST00000617445 SPATA5Q8NB90 893 aa23.49■■□□□ 1.35
CCDC28A-203ENST00000617445 OTUD5Q96G74 571 aa23.49■■□□□ 1.35
CCDC28A-203ENST00000617445 PTPN18Q99952 460 aa23.49■■□□□ 1.35
CCDC28A-203ENST00000617445 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.49■■□□□ 1.35
CCDC28A-203ENST00000617445 MAP4K4O95819 1239 aaPredicted RBP23.48■■□□□ 1.35
CCDC28A-203ENST00000617445 RLBP1P12271 317 aa23.48■■□□□ 1.35
CCDC28A-203ENST00000617445 GSTO1P78417 241 aa23.48■■□□□ 1.35
CCDC28A-203ENST00000617445 TCP10Q12799 353 aa23.48■■□□□ 1.35
CCDC28A-203ENST00000617445 NFIAQ12857 509 aa23.48■■□□□ 1.35
CCDC28A-203ENST00000617445 OS9Q13438 667 aaPredicted RBP23.48■■□□□ 1.35
CCDC28A-203ENST00000617445 HMG20BQ9P0W2 317 aa23.48■■□□□ 1.35
CCDC28A-203ENST00000617445 FAM198AQ9UFP1 575 aa23.48■■□□□ 1.35
CCDC28A-203ENST00000617445 ZNF112Q9UJU3 913 aa23.48■■□□□ 1.35
CCDC28A-203ENST00000617445 SNCAIPQ9Y6H5 919 aa23.48■■□□□ 1.35
CCDC28A-203ENST00000617445 CCL15-CCL14A0A0B4J2E2 113 aa23.47■■□□□ 1.35
CCDC28A-203ENST00000617445 SURF6O75683 361 aaKnown RBP23.47■■□□□ 1.35
CCDC28A-203ENST00000617445 WDHD1O75717 1129 aaPredicted RBP23.47■■□□□ 1.35
CCDC28A-203ENST00000617445 LDHCP07864 332 aa23.47■■□□□ 1.35
CCDC28A-203ENST00000617445 CETPP11597 493 aa23.47■■□□□ 1.35
CCDC28A-203ENST00000617445 CCL15Q16663 113 aa23.47■■□□□ 1.35
CCDC28A-203ENST00000617445 FBXO46Q6PJ61 603 aaPredicted RBP23.47■■□□□ 1.35
CCDC28A-203ENST00000617445 MIGA2Q7L4E1 593 aa23.47■■□□□ 1.35
CCDC28A-203ENST00000617445 CNKSR2Q8WXI2 1034 aa23.47■■□□□ 1.35
CCDC28A-203ENST00000617445 ZCCHC17Q9NP64 241 aaKnown RBP23.47■■□□□ 1.35
CCDC28A-203ENST00000617445 NOP58Q9Y2X3 529 aaKnown RBP23.47■■□□□ 1.35
CCDC28A-203ENST00000617445 MROH7-TTC4A0A0A0MT08 1334 aa23.46■■□□□ 1.35
CCDC28A-203ENST00000617445 MLLT1Q03111 559 aaPredicted RBP23.46■■□□□ 1.35
CCDC28A-203ENST00000617445 PPATQ06203 517 aa23.46■■□□□ 1.35
CCDC28A-203ENST00000617445 CRHR2Q13324 411 aa23.46■■□□□ 1.35
CCDC28A-203ENST00000617445 PPIL2Q13356 520 aa23.46■■□□□ 1.35
CCDC28A-203ENST00000617445 BRI3BPQ8WY22 251 aa23.46■■□□□ 1.35
CCDC28A-203ENST00000617445 ZKSCAN4Q969J2 545 aaPredicted RBP23.46■■□□□ 1.35
CCDC28A-203ENST00000617445 ERO1AQ96HE7 468 aa23.46■■□□□ 1.35
CCDC28A-203ENST00000617445 GPR75-ASB3A0A0A6YYF3 556 aa23.45■■□□□ 1.34
CCDC28A-203ENST00000617445 IGSF3O75054 1194 aa23.45■■□□□ 1.34
CCDC28A-203ENST00000617445 MECOMQ03112 1051 aa23.45■■□□□ 1.34
CCDC28A-203ENST00000617445 SNAPC2Q13487 334 aa23.45■■□□□ 1.34
CCDC28A-203ENST00000617445 TNNI3KQ59H18 835 aa23.45■■□□□ 1.34
CCDC28A-203ENST00000617445 CCDC158Q5M9N0 1113 aa23.45■■□□□ 1.34
CCDC28A-203ENST00000617445 HPS5Q9UPZ3 1129 aa23.45■■□□□ 1.34
CCDC28A-203ENST00000617445 FPGT-TNNI3KV9GXZ4 949 aa23.45■■□□□ 1.34
CCDC28A-203ENST00000617445 NPM3O75607 178 aaKnown RBP23.44■■□□□ 1.34
CCDC28A-203ENST00000617445 BTDP43251 543 aa23.44■■□□□ 1.34
CCDC28A-203ENST00000617445 RGS3P49796 1198 aa23.44■■□□□ 1.34
CCDC28A-203ENST00000617445 ZFYVE28Q9HCC9 887 aa23.44■■□□□ 1.34
CCDC28A-203ENST00000617445 IRF6O14896 467 aa23.43■■□□□ 1.34
CCDC28A-203ENST00000617445 NOL9Q5SY16 702 aaKnown RBP23.43■■□□□ 1.34
CCDC28A-203ENST00000617445 ZNF512BQ96KM6 892 aaPredicted RBP23.43■■□□□ 1.34
CCDC28A-203ENST00000617445 C1orf115Q9H7X2 142 aa23.43■■□□□ 1.34
CCDC28A-203ENST00000617445 INPP5BP32019 993 aa23.42■■□□□ 1.34
CCDC28A-203ENST00000617445 MCAMP43121 646 aa23.42■■□□□ 1.34
CCDC28A-203ENST00000617445 SP3Q02447 781 aa23.42■■□□□ 1.34
CCDC28A-203ENST00000617445 ARHGEF6Q15052 776 aa23.42■■□□□ 1.34
CCDC28A-203ENST00000617445 TAF1CQ15572 869 aaPredicted RBP23.42■■□□□ 1.34
CCDC28A-203ENST00000617445 TTC39AQ5SRH9 613 aa23.42■■□□□ 1.34
CCDC28A-203ENST00000617445 NSUN4Q96CB9 384 aaKnown RBP23.42■■□□□ 1.34
CCDC28A-203ENST00000617445 LRP2BPQ9P2M1 347 aa23.42■■□□□ 1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms