RNA–Protein interactions for RNA: ENST00000597901.1

LIG1-215, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 565 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-215ENST00000597901 ELP3Q9H9T3 547 aa18.6■□□□□ 0.57
LIG1-215ENST00000597901 HOOK2Q96ED9 719 aa18.59■□□□□ 0.57
LIG1-215ENST00000597901 FAM163AQ96GL9 167 aaPredicted RBP18.59■□□□□ 0.57
LIG1-215ENST00000597901 GPR108Q9NPR9 543 aa18.59■□□□□ 0.57
LIG1-215ENST00000597901 HMG20BQ9P0W2 317 aa18.59■□□□□ 0.57
LIG1-215ENST00000597901 NOP58Q9Y2X3 529 aaKnown RBP18.59■□□□□ 0.57
LIG1-215ENST00000597901 ALDH1A1P00352 501 aa18.58■□□□□ 0.56
LIG1-215ENST00000597901 MS4A1P11836 297 aa18.58■□□□□ 0.56
LIG1-215ENST00000597901 TCP10Q12799 353 aa18.58■□□□□ 0.56
LIG1-215ENST00000597901 NFIAQ12857 509 aa18.58■□□□□ 0.56
LIG1-215ENST00000597901 OS9Q13438 667 aaPredicted RBP18.58■□□□□ 0.56
LIG1-215ENST00000597901 IFNL1Q8IU54 200 aa18.58■□□□□ 0.56
LIG1-215ENST00000597901 SPATA5Q8NB90 893 aa18.58■□□□□ 0.56
LIG1-215ENST00000597901 DDX55Q8NHQ9 600 aaKnown RBP eCLIP18.58■□□□□ 0.56
LIG1-215ENST00000597901 R3HDMLQ9H3Y0 253 aa18.58■□□□□ 0.56
LIG1-215ENST00000597901 GPR25O00155 361 aa18.57■□□□□ 0.56
LIG1-215ENST00000597901 VGLL4Q14135 290 aa18.57■□□□□ 0.56
LIG1-215ENST00000597901 ERICH6Q7L0X2 663 aa18.57■□□□□ 0.56
LIG1-215ENST00000597901 MIGA2Q7L4E1 593 aa18.57■□□□□ 0.56
LIG1-215ENST00000597901 SLF2Q8IX21 1173 aa18.57■□□□□ 0.56
LIG1-215ENST00000597901 ZNF296Q8WUU4 475 aaPredicted RBP18.57■□□□□ 0.56
LIG1-215ENST00000597901 OPTNQ96CV9 577 aa18.57■□□□□ 0.56
LIG1-215ENST00000597901 CFHR5Q9BXR6 569 aa18.57■□□□□ 0.56
LIG1-215ENST00000597901 FAM198AQ9UFP1 575 aa18.57■□□□□ 0.56
LIG1-215ENST00000597901 GAKO14976 1311 aa18.56■□□□□ 0.56
LIG1-215ENST00000597901 TESPA1A2RU30 521 aaPredicted RBP18.56■□□□□ 0.56
LIG1-215ENST00000597901 UQCRFS1P1P0C7P4 283 aa18.56■□□□□ 0.56
LIG1-215ENST00000597901 ARID4AP29374 1257 aaPredicted RBP18.56■□□□□ 0.56
LIG1-215ENST00000597901 TNNI3KQ59H18 835 aa18.56■□□□□ 0.56
LIG1-215ENST00000597901 NOM1Q5C9Z4 860 aaKnown RBP18.56■□□□□ 0.56
LIG1-215ENST00000597901 TBC1D9Q6ZT07 1266 aa18.56■□□□□ 0.56
LIG1-215ENST00000597901 DZIP1Q86YF9 867 aaKnown RBP18.56■□□□□ 0.56
LIG1-215ENST00000597901 ZFPM1Q8IX07 1006 aa18.56■□□□□ 0.56
LIG1-215ENST00000597901 CNKSR2Q8WXI2 1034 aa18.56■□□□□ 0.56
LIG1-215ENST00000597901 CSADQ9Y600 493 aa18.56■□□□□ 0.56
LIG1-215ENST00000597901 FPGT-TNNI3KV9GXZ4 949 aa18.56■□□□□ 0.56
LIG1-215ENST00000597901 IGF2BP3O00425 579 aaKnown RBP eCLIP18.55■□□□□ 0.56
LIG1-215ENST00000597901 MECOMQ03112 1051 aa18.55■□□□□ 0.56
LIG1-215ENST00000597901 DCAF15Q66K64 600 aa18.55■□□□□ 0.56
LIG1-215ENST00000597901 CEP85Q6P2H3 762 aa18.55■□□□□ 0.56
LIG1-215ENST00000597901 PI16Q6UXB8 463 aa18.55■□□□□ 0.56
LIG1-215ENST00000597901 ZKSCAN4Q969J2 545 aaPredicted RBP18.55■□□□□ 0.56
LIG1-215ENST00000597901 MS4A4AQ96JQ5 239 aa18.55■□□□□ 0.56
LIG1-215ENST00000597901 PTPN18Q99952 460 aa18.55■□□□□ 0.56
LIG1-215ENST00000597901 RCAN3Q9UKA8 241 aa18.55■□□□□ 0.56
LIG1-215ENST00000597901 ECM29Q5VYK3 1845 aa18.54■□□□□ 0.56
LIG1-215ENST00000597901 CASP8AP2Q9UKL3 1982 aa18.54■□□□□ 0.56
LIG1-215ENST00000597901 MCAMP43121 646 aa18.54■□□□□ 0.56
LIG1-215ENST00000597901 CCDC158Q5M9N0 1113 aa18.54■□□□□ 0.56
LIG1-215ENST00000597901 OTUD7BQ6GQQ9 843 aa18.54■□□□□ 0.56
LIG1-215ENST00000597901 CTU1Q7Z7A3 348 aaKnown RBP18.54■□□□□ 0.56
LIG1-215ENST00000597901 ZNF384Q8TF68 577 aa18.54■□□□□ 0.56
LIG1-215ENST00000597901 WRNIP1Q96S55 665 aa18.54■□□□□ 0.56
LIG1-215ENST00000597901 DBNDD2Q9BQY9 259 aa18.54■□□□□ 0.56
LIG1-215ENST00000597901 IDI2Q9BXS1 227 aa18.54■□□□□ 0.56
LIG1-215ENST00000597901 ZNF341Q9BYN7 854 aa18.54■□□□□ 0.56
LIG1-215ENST00000597901 GPR75-ASB3A0A0A6YYF3 556 aa18.53■□□□□ 0.56
LIG1-215ENST00000597901 ENTPD3O75355 529 aa18.53■□□□□ 0.56
LIG1-215ENST00000597901 LDHCP07864 332 aa18.53■□□□□ 0.56
LIG1-215ENST00000597901 RAI14Q9P0K7 980 aa18.53■□□□□ 0.56
LIG1-215ENST00000597901 ZNF112Q9UJU3 913 aa18.53■□□□□ 0.56
LIG1-215ENST00000597901 SNCAIPQ9Y6H5 919 aa18.53■□□□□ 0.56
LIG1-215ENST00000597901 ARAP2Q8WZ64 1704 aa18.52■□□□□ 0.56
LIG1-215ENST00000597901 SPDYE5A6NIY4 337 aa18.52■□□□□ 0.56
LIG1-215ENST00000597901 FKTNO75072 461 aa18.52■□□□□ 0.56
LIG1-215ENST00000597901 BTDP43251 543 aa18.52■□□□□ 0.56
LIG1-215ENST00000597901 RGS3P49796 1198 aa18.52■□□□□ 0.56
LIG1-215ENST00000597901 GTF2A2P52657 109 aa18.52■□□□□ 0.56
LIG1-215ENST00000597901 MLLT1Q03111 559 aaPredicted RBP18.52■□□□□ 0.56
LIG1-215ENST00000597901 TTC39AQ5SRH9 613 aa18.52■□□□□ 0.56
LIG1-215ENST00000597901 ERO1BQ86YB8 467 aa18.52■□□□□ 0.56
LIG1-215ENST00000597901 NSUN4Q96CB9 384 aaKnown RBP18.52■□□□□ 0.56
LIG1-215ENST00000597901 EAF2Q96CJ1 260 aaPredicted RBP18.52■□□□□ 0.56
LIG1-215ENST00000597901 OTUD5Q96G74 571 aa18.52■□□□□ 0.56
LIG1-215ENST00000597901 CCDC8Q9H0W5 538 aaPredicted RBP18.52■□□□□ 0.56
LIG1-215ENST00000597901 SNRKQ9NRH2 765 aa18.52■□□□□ 0.56
LIG1-215ENST00000597901 LRP2BPQ9P2M1 347 aa18.52■□□□□ 0.56
LIG1-215ENST00000597901 COG6Q9Y2V7 657 aa18.52■□□□□ 0.56
LIG1-215ENST00000597901 RPAP1Q9BWH6 1393 aaPredicted RBP18.52■□□□□ 0.55
LIG1-215ENST00000597901 MROH7-TTC4A0A0A0MT08 1334 aa18.51■□□□□ 0.55
LIG1-215ENST00000597901 INPP5BP32019 993 aa18.51■□□□□ 0.55
LIG1-215ENST00000597901 GSTO1P78417 241 aa18.51■□□□□ 0.55
LIG1-215ENST00000597901 BRI3BPQ8WY22 251 aa18.51■□□□□ 0.55
LIG1-215ENST00000597901 ZNF512BQ96KM6 892 aaPredicted RBP18.51■□□□□ 0.55
LIG1-215ENST00000597901 CCL15-CCL14A0A0B4J2E2 113 aa18.5■□□□□ 0.55
LIG1-215ENST00000597901 WDHD1O75717 1129 aaPredicted RBP18.5■□□□□ 0.55
LIG1-215ENST00000597901 RHBDL3P58872 404 aa18.5■□□□□ 0.55
LIG1-215ENST00000597901 CCL15Q16663 113 aa18.5■□□□□ 0.55
LIG1-215ENST00000597901 SH3BP5LQ7L8J4 393 aa18.5■□□□□ 0.55
LIG1-215ENST00000597901 RPAP2Q8IXW5 612 aaPredicted RBP18.5■□□□□ 0.55
LIG1-215ENST00000597901 ZBTB40Q9NUA8 1239 aa18.5■□□□□ 0.55
LIG1-215ENST00000597901 DDX19BQ9UMR2 479 aa18.5■□□□□ 0.55
LIG1-215ENST00000597901 AKAP11Q9UKA4 1901 aa18.5■□□□□ 0.55
LIG1-215ENST00000597901 IRF6O14896 467 aa18.49■□□□□ 0.55
LIG1-215ENST00000597901 MAP3K10Q02779 954 aa18.49■□□□□ 0.55
LIG1-215ENST00000597901 PKN2Q16513 984 aaKnown RBP18.49■□□□□ 0.55
LIG1-215ENST00000597901 ZSCAN29Q8IWY8 852 aaPredicted RBP18.49■□□□□ 0.55
LIG1-215ENST00000597901 DDX4Q9NQI0 724 aaKnown RBP18.49■□□□□ 0.55
LIG1-215ENST00000597901 DBNLQ9UJU6 430 aaKnown RBP18.49■□□□□ 0.55
LIG1-215ENST00000597901 EXOC6BQ9Y2D4 811 aa18.49■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms