RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ADGRA1Q86SQ6 560 aa18.2■□□□□ 0.5
TRIM28-207ENST00000597136 FAM163AQ96GL9 167 aaPredicted RBP18.2■□□□□ 0.5
TRIM28-207ENST00000597136 VEZTQ9HBM0 779 aa18.2■□□□□ 0.5
TRIM28-207ENST00000597136 PAG1Q9NWQ8 432 aa18.2■□□□□ 0.5
TRIM28-207ENST00000597136 BAZ2AQ9UIF9 1905 aaKnown RBP18.2■□□□□ 0.5
TRIM28-207ENST00000597136 HTRA3P83110 453 aa18.19■□□□□ 0.5
TRIM28-207ENST00000597136 SLFNL1Q499Z3 407 aa18.19■□□□□ 0.5
TRIM28-207ENST00000597136 CDC42EP5Q6NZY7 148 aa18.19■□□□□ 0.5
TRIM28-207ENST00000597136 SULF1Q8IWU6 871 aa18.19■□□□□ 0.5
TRIM28-207ENST00000597136 GAKO14976 1311 aa18.19■□□□□ 0.5
TRIM28-207ENST00000597136 PITPNM2Q9BZ72 1349 aa18.19■□□□□ 0.5
TRIM28-207ENST00000597136 ERC2O15083 957 aa18.18■□□□□ 0.5
TRIM28-207ENST00000597136 MYO1BO43795 1136 aa18.18■□□□□ 0.5
TRIM28-207ENST00000597136 CHGBP05060 677 aa18.18■□□□□ 0.5
TRIM28-207ENST00000597136 CST9Q5W186 159 aa18.18■□□□□ 0.5
TRIM28-207ENST00000597136 MROH7-TTC4A0A0A0MT08 1334 aa18.18■□□□□ 0.5
TRIM28-207ENST00000597136 TCP10L2B9ZVM9 353 aa18.17■□□□□ 0.5
TRIM28-207ENST00000597136 GLRX3O76003 335 aaKnown RBP18.17■□□□□ 0.5
TRIM28-207ENST00000597136 TTC22Q5TAA0 569 aa18.17■□□□□ 0.5
TRIM28-207ENST00000597136 NAA16Q6N069 864 aaPredicted RBP18.17■□□□□ 0.5
TRIM28-207ENST00000597136 MAGEB6Q8N7X4 407 aa18.17■□□□□ 0.5
TRIM28-207ENST00000597136 USP40Q9NVE5 1235 aa18.17■□□□□ 0.5
TRIM28-207ENST00000597136 GPR75-ASB3A0A0A6YYF3 556 aa18.17■□□□□ 0.5
TRIM28-207ENST00000597136 PCNTO95613 3336 aa18.17■□□□□ 0.5
TRIM28-207ENST00000597136 BTDP43251 543 aa18.17■□□□□ 0.5
TRIM28-207ENST00000597136 TTF1Q15361 905 aaPredicted RBP18.17■□□□□ 0.5
TRIM28-207ENST00000597136 CDCA5Q96FF9 252 aa18.17■□□□□ 0.5
TRIM28-207ENST00000597136 DEFB129Q9H1M3 183 aa18.17■□□□□ 0.5
TRIM28-207ENST00000597136 ZNF408Q9H9D4 720 aa18.17■□□□□ 0.5
TRIM28-207ENST00000597136 LDHCP07864 332 aa18.16■□□□□ 0.5
TRIM28-207ENST00000597136 GSPT1P15170 499 aaKnown RBP18.16■□□□□ 0.5
TRIM28-207ENST00000597136 HSPA6P17066 643 aa18.16■□□□□ 0.5
TRIM28-207ENST00000597136 CYP7A1P22680 504 aa18.16■□□□□ 0.5
TRIM28-207ENST00000597136 APLP1P51693 650 aa18.16■□□□□ 0.5
TRIM28-207ENST00000597136 GSTO1P78417 241 aa18.16■□□□□ 0.5
TRIM28-207ENST00000597136 APOBEC3FQ8IUX4 373 aaKnown RBP18.16■□□□□ 0.5
TRIM28-207ENST00000597136 SLF2Q8IX21 1173 aa18.16■□□□□ 0.5
TRIM28-207ENST00000597136 CNTNAP1P78357 1384 aa18.15■□□□□ 0.5
TRIM28-207ENST00000597136 RHBDL3P58872 404 aa18.15■□□□□ 0.5
TRIM28-207ENST00000597136 DYNLL1P63167 89 aaKnown RBP18.15■□□□□ 0.5
TRIM28-207ENST00000597136 MAP3K12Q12852 859 aa18.15■□□□□ 0.5
TRIM28-207ENST00000597136 NFIAQ12857 509 aa18.15■□□□□ 0.5
TRIM28-207ENST00000597136 RASA3Q14644 834 aa18.15■□□□□ 0.5
TRIM28-207ENST00000597136 BMP2KLQ5H9B9 411 aa18.15■□□□□ 0.5
TRIM28-207ENST00000597136 SLC9C2Q5TAH2 1124 aa18.15■□□□□ 0.5
TRIM28-207ENST00000597136 CDAN1Q8IWY9 1227 aa18.15■□□□□ 0.5
TRIM28-207ENST00000597136 AATFQ9NY61 560 aaKnown RBP eCLIP18.15■□□□□ 0.53e-7■■■■□ 26.6
TRIM28-207ENST00000597136 CELF2O95319 508 aaKnown RBP18.14■□□□□ 0.49
TRIM28-207ENST00000597136 PDE6AP16499 860 aa18.14■□□□□ 0.49
TRIM28-207ENST00000597136 ZFPM1Q8IX07 1006 aa18.14■□□□□ 0.49
TRIM28-207ENST00000597136 OTOFQ9HC10 1997 aa18.13■□□□□ 0.49
TRIM28-207ENST00000597136 TCRBV5S4A2TA0A5A2 114 aa18.13■□□□□ 0.49
TRIM28-207ENST00000597136 MIGA1Q8NAN2 632 aa18.13■□□□□ 0.49
TRIM28-207ENST00000597136 TMEM39BQ9GZU3 492 aa18.13■□□□□ 0.49
TRIM28-207ENST00000597136 FAM198AQ9UFP1 575 aa18.13■□□□□ 0.49
TRIM28-207ENST00000597136 FZD1Q9UP38 647 aa18.13■□□□□ 0.49
TRIM28-207ENST00000597136 ZNF532Q9HCE3 1301 aa18.13■□□□□ 0.49
TRIM28-207ENST00000597136 SIPA1L1O43166 1804 aa18.13■□□□□ 0.49
TRIM28-207ENST00000597136 TCP10Q12799 353 aa18.13■□□□□ 0.49
TRIM28-207ENST00000597136 NBPF12Q5TAG4 269 aaPredicted RBP18.13■□□□□ 0.49
TRIM28-207ENST00000597136 SH3RF3Q8TEJ3 882 aaPredicted RBP18.13■□□□□ 0.49
TRIM28-207ENST00000597136 TEPSINQ96N21 525 aa18.13■□□□□ 0.49
TRIM28-207ENST00000597136 DDX4Q9NQI0 724 aaKnown RBP18.13■□□□□ 0.49
TRIM28-207ENST00000597136 TMEM88BA6NKF7 163 aa18.12■□□□□ 0.49
TRIM28-207ENST00000597136 WDHD1O75717 1129 aaPredicted RBP18.12■□□□□ 0.49
TRIM28-207ENST00000597136 PPP4CP60510 307 aa18.12■□□□□ 0.49
TRIM28-207ENST00000597136 MOB2Q70IA6 237 aa18.12■□□□□ 0.49
TRIM28-207ENST00000597136 KBTBD3Q8NAB2 608 aa18.12■□□□□ 0.49
TRIM28-207ENST00000597136 NAV1Q8NEY1 1877 aa18.12■□□□□ 0.49
TRIM28-207ENST00000597136 SDSP20132 328 aa18.11■□□□□ 0.49
TRIM28-207ENST00000597136 ADD2P35612 726 aa18.11■□□□□ 0.49
TRIM28-207ENST00000597136 PRKG1Q13976 671 aa18.11■□□□□ 0.49
TRIM28-207ENST00000597136 FKBP1CQ5VVH2 108 aa18.11■□□□□ 0.49
TRIM28-207ENST00000597136 TMOD2Q9NZR1 351 aa18.11■□□□□ 0.49
TRIM28-207ENST00000597136 MYH8P13535 1937 aa18.11■□□□□ 0.49
TRIM28-207ENST00000597136 SSC5DA1L4H1 1573 aa18.11■□□□□ 0.49
TRIM28-207ENST00000597136 TRIM6-TRIM34B2RNG4 842 aa18.1■□□□□ 0.49
TRIM28-207ENST00000597136 IGSF3O75054 1194 aa18.1■□□□□ 0.49
TRIM28-207ENST00000597136 PICALMQ13492 652 aa18.1■□□□□ 0.49
TRIM28-207ENST00000597136 IDI2Q9BXS1 227 aa18.1■□□□□ 0.49
TRIM28-207ENST00000597136 RFX7Q2KHR2 1363 aa18.1■□□□□ 0.49
TRIM28-207ENST00000597136 TNNI2P48788 182 aa18.09■□□□□ 0.49
TRIM28-207ENST00000597136 TNFAIP1Q13829 316 aa18.09■□□□□ 0.49
TRIM28-207ENST00000597136 FAM83AQ86UY5 434 aa18.09■□□□□ 0.49
TRIM28-207ENST00000597136 TEX11Q8IYF3 940 aa18.09■□□□□ 0.49
TRIM28-207ENST00000597136 RIOK1Q9BRS2 568 aaKnown RBP18.09■□□□□ 0.49
TRIM28-207ENST00000597136 PAPPA2Q9BXP8 1791 aa18.09■□□□□ 0.49
TRIM28-207ENST00000597136 ATAD5Q96QE3 1844 aa18.09■□□□□ 0.49
TRIM28-207ENST00000597136 BAG3O95817 575 aa18.08■□□□□ 0.49
TRIM28-207ENST00000597136 SH3BP5LQ7L8J4 393 aa18.08■□□□□ 0.49
TRIM28-207ENST00000597136 FAM151AQ8WW52 585 aa18.08■□□□□ 0.49
TRIM28-207ENST00000597136 RILPL2Q969X0 211 aa18.08■□□□□ 0.49
TRIM28-207ENST00000597136 EVI5LQ96CN4 794 aa18.08■□□□□ 0.49
TRIM28-207ENST00000597136 NOL10Q9BSC4 688 aaKnown RBP18.08■□□□□ 0.49
TRIM28-207ENST00000597136 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.08■□□□□ 0.492e-8■■■□□ 16.1
TRIM28-207ENST00000597136 GBA2Q9HCG7 927 aaPredicted RBP18.08■□□□□ 0.49
TRIM28-207ENST00000597136 CREBZFQ9NS37 354 aa18.08■□□□□ 0.49
TRIM28-207ENST00000597136 PPP2R3BQ9Y5P8 575 aa18.08■□□□□ 0.49
TRIM28-207ENST00000597136 SLURP2P0DP57 97 aa18.08■□□□□ 0.48
TRIM28-207ENST00000597136 TGFBRAP1Q8WUH2 860 aa18.08■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 70.7 ms