RNA–Protein interactions for RNA: ENST00000596938.1

CCDC9-203, Transcript of coiled-coil domain containing 9, humanhuman

TSL 3

Gene CCDC9, Length 457 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9-203ENST00000596938 USP40Q9NVE5 1235 aa12.96□□□□□ -0.33
CCDC9-203ENST00000596938 HMG20BQ9P0W2 317 aa12.96□□□□□ -0.33
CCDC9-203ENST00000596938 ABCF2Q9UG63 623 aa12.96□□□□□ -0.33
CCDC9-203ENST00000596938 FPGT-TNNI3KV9GXZ4 949 aa12.96□□□□□ -0.33
CCDC9-203ENST00000596938 MKRN3Q13064 507 aaKnown RBP12.95□□□□□ -0.34
CCDC9-203ENST00000596938 OS9Q13438 667 aaPredicted RBP12.95□□□□□ -0.34
CCDC9-203ENST00000596938 NOM1Q5C9Z4 860 aaKnown RBP12.95□□□□□ -0.34
CCDC9-203ENST00000596938 PPP1R3FQ6ZSY5 799 aaPredicted RBP12.95□□□□□ -0.34
CCDC9-203ENST00000596938 ERICH6Q7L0X2 663 aa12.95□□□□□ -0.34
CCDC9-203ENST00000596938 DDX55Q8NHQ9 600 aaKnown RBP eCLIP12.95□□□□□ -0.34
CCDC9-203ENST00000596938 ZNF512BQ96KM6 892 aaPredicted RBP12.95□□□□□ -0.34
CCDC9-203ENST00000596938 CFHR5Q9BXR6 569 aa12.95□□□□□ -0.34
CCDC9-203ENST00000596938 ZBTB40Q9NUA8 1239 aa12.95□□□□□ -0.34
CCDC9-203ENST00000596938 DDX19BQ9UMR2 479 aa12.95□□□□□ -0.34
CCDC9-203ENST00000596938 GAKO14976 1311 aa12.94□□□□□ -0.34
CCDC9-203ENST00000596938 ALDH1A1P00352 501 aa12.94□□□□□ -0.34
CCDC9-203ENST00000596938 CCDC158Q5M9N0 1113 aa12.94□□□□□ -0.34
CCDC9-203ENST00000596938 DZIP1Q86YF9 867 aaKnown RBP12.94□□□□□ -0.34
CCDC9-203ENST00000596938 RPAP2Q8IXW5 612 aaPredicted RBP12.94□□□□□ -0.34
CCDC9-203ENST00000596938 IDI2Q9BXS1 227 aa12.94□□□□□ -0.34
CCDC9-203ENST00000596938 CHMP4BQ9H444 224 aaKnown RBP12.94□□□□□ -0.34
CCDC9-203ENST00000596938 RPAP1Q9BWH6 1393 aaPredicted RBP12.94□□□□□ -0.34
CCDC9-203ENST00000596938 GPR75-ASB3A0A0A6YYF3 556 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 TESPA1A2RU30 521 aaPredicted RBP12.93□□□□□ -0.34
CCDC9-203ENST00000596938 IGSF3O75054 1194 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 TBC1D8O95759 1140 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 LDHCP07864 332 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 GJA5P36382 358 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 MCAMP43121 646 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 GSTO1P78417 241 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 MECOMQ03112 1051 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 NFIAQ12857 509 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 PDE3AQ14432 1141 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 HSP90AB4PQ58FF6 505 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 DCAF15Q66K64 600 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 ERC1Q8IUD2 1116 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 ABHD8Q96I13 439 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 FAM198AQ9UFP1 575 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 COG6Q9Y2V7 657 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 CSADQ9Y600 493 aa12.93□□□□□ -0.34
CCDC9-203ENST00000596938 ENTPD3O75355 529 aa12.92□□□□□ -0.34
CCDC9-203ENST00000596938 CAPN15O75808 1086 aa12.92□□□□□ -0.34
CCDC9-203ENST00000596938 MAP4K4O95819 1239 aaPredicted RBP12.92□□□□□ -0.34
CCDC9-203ENST00000596938 VGLL4Q14135 290 aa12.92□□□□□ -0.34
CCDC9-203ENST00000596938 TTC39AQ5SRH9 613 aa12.92□□□□□ -0.34
CCDC9-203ENST00000596938 PI16Q6UXB8 463 aa12.92□□□□□ -0.34
CCDC9-203ENST00000596938 TBC1D9Q6ZT07 1266 aa12.92□□□□□ -0.34
CCDC9-203ENST00000596938 IFNL1Q8IU54 200 aa12.92□□□□□ -0.34
CCDC9-203ENST00000596938 ZNF384Q8TF68 577 aa12.92□□□□□ -0.34
CCDC9-203ENST00000596938 NSUN4Q96CB9 384 aaKnown RBP12.92□□□□□ -0.34
CCDC9-203ENST00000596938 OPTNQ96CV9 577 aa12.92□□□□□ -0.34
CCDC9-203ENST00000596938 DBNDD2Q9BQY9 259 aa12.92□□□□□ -0.34
CCDC9-203ENST00000596938 ELP3Q9H9T3 547 aa12.92□□□□□ -0.34
CCDC9-203ENST00000596938 ZNF112Q9UJU3 913 aa12.92□□□□□ -0.34
CCDC9-203ENST00000596938 MROH7-TTC4A0A0A0MT08 1334 aa12.91□□□□□ -0.34
CCDC9-203ENST00000596938 ARAP2Q8WZ64 1704 aa12.91□□□□□ -0.34
CCDC9-203ENST00000596938 NPM3O75607 178 aaKnown RBP12.91□□□□□ -0.34
CCDC9-203ENST00000596938 TCP10Q12799 353 aa12.91□□□□□ -0.34
CCDC9-203ENST00000596938 OTUD7BQ6GQQ9 843 aa12.91□□□□□ -0.34
CCDC9-203ENST00000596938 MIGA2Q7L4E1 593 aa12.91□□□□□ -0.34
CCDC9-203ENST00000596938 GOLGA6L2Q8N9W4 650 aaPredicted RBP12.91□□□□□ -0.34
CCDC9-203ENST00000596938 EAF2Q96CJ1 260 aaPredicted RBP12.91□□□□□ -0.34
CCDC9-203ENST00000596938 MS4A4AQ96JQ5 239 aa12.91□□□□□ -0.34
CCDC9-203ENST00000596938 ZNF341Q9BYN7 854 aa12.91□□□□□ -0.34
CCDC9-203ENST00000596938 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.91□□□□□ -0.34
CCDC9-203ENST00000596938 LRP2BPQ9P2M1 347 aa12.91□□□□□ -0.34
CCDC9-203ENST00000596938 DBNLQ9UJU6 430 aaKnown RBP12.91□□□□□ -0.34
CCDC9-203ENST00000596938 SPDYE5A6NIY4 337 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 GPR25O00155 361 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 IGF2BP3O00425 579 aaKnown RBP eCLIP12.9□□□□□ -0.34
CCDC9-203ENST00000596938 HMMRO75330 724 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 WDHD1O75717 1129 aaPredicted RBP12.9□□□□□ -0.34
CCDC9-203ENST00000596938 BTDP43251 543 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 RGS3P49796 1198 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 GTF2A2P52657 109 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 RHBDL3P58872 404 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 MAP3K10Q02779 954 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 DGKZQ13574 1117 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 ERO1BQ86YB8 467 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 ZFPM1Q8IX07 1006 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 SIRT2Q8IXJ6 389 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 ZKSCAN4Q969J2 545 aaPredicted RBP12.9□□□□□ -0.34
CCDC9-203ENST00000596938 WRNIP1Q96S55 665 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 PTPN18Q99952 460 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 MCOLN1Q9GZU1 580 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 CCDC8Q9H0W5 538 aaPredicted RBP12.9□□□□□ -0.34
CCDC9-203ENST00000596938 RAI14Q9P0K7 980 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 ECM29Q5VYK3 1845 aa12.9□□□□□ -0.34
CCDC9-203ENST00000596938 CYP2E1P05181 493 aaPredicted RBP12.89□□□□□ -0.35
CCDC9-203ENST00000596938 ZNF296Q8WUU4 475 aaPredicted RBP12.89□□□□□ -0.35
CCDC9-203ENST00000596938 CNKSR2Q8WXI2 1034 aa12.89□□□□□ -0.35
CCDC9-203ENST00000596938 R3HDMLQ9H3Y0 253 aa12.89□□□□□ -0.35
CCDC9-203ENST00000596938 SNRKQ9NRH2 765 aa12.89□□□□□ -0.35
CCDC9-203ENST00000596938 EXOC6BQ9Y2D4 811 aa12.89□□□□□ -0.35
CCDC9-203ENST00000596938 SNCAIPQ9Y6H5 919 aa12.89□□□□□ -0.35
CCDC9-203ENST00000596938 ZAP70P43403 619 aa12.88□□□□□ -0.35
CCDC9-203ENST00000596938 PPP4CP60510 307 aa12.88□□□□□ -0.35
CCDC9-203ENST00000596938 PPATQ06203 517 aa12.88□□□□□ -0.35
CCDC9-203ENST00000596938 PKN2Q16513 984 aaKnown RBP12.88□□□□□ -0.35
CCDC9-203ENST00000596938 SH3BP5LQ7L8J4 393 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 127.5 ms