RNA–Protein interactions for RNA: ENST00000596708.1

CHMP2A-202, Transcript of charged multivesicular body protein 2A, humanhuman

TSL 3

Gene CHMP2A, Length 687 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-202ENST00000596708 SIL1Q9H173 461 aa13.19□□□□□ -0.3
CHMP2A-202ENST00000596708 SMC4Q9NTJ3 1288 aa13.19□□□□□ -0.3
CHMP2A-202ENST00000596708 PTCH2Q9Y6C5 1203 aa13.19□□□□□ -0.3
CHMP2A-202ENST00000596708 BTBD19C9JJ37 291 aa13.18□□□□□ -0.3
CHMP2A-202ENST00000596708 IRF6O14896 467 aa13.18□□□□□ -0.3
CHMP2A-202ENST00000596708 ECM2O94769 699 aaPredicted RBP13.18□□□□□ -0.3
CHMP2A-202ENST00000596708 UBTFL1P0CB47 393 aaPredicted RBP13.18□□□□□ -0.3
CHMP2A-202ENST00000596708 TCP10Q12799 353 aa13.18□□□□□ -0.3
CHMP2A-202ENST00000596708 SLC9C1Q4G0N8 1177 aa13.18□□□□□ -0.3
CHMP2A-202ENST00000596708 FAM151AQ8WW52 585 aa13.18□□□□□ -0.3
CHMP2A-202ENST00000596708 GCC1Q96CN9 775 aa13.18□□□□□ -0.3
CHMP2A-202ENST00000596708 GNL3LQ9NVN8 582 aaKnown RBP13.18□□□□□ -0.3
CHMP2A-202ENST00000596708 CEP126Q9P2H0 1117 aa13.18□□□□□ -0.3
CHMP2A-202ENST00000596708 DOCK2Q92608 1830 aa13.18□□□□□ -0.3
CHMP2A-202ENST00000596708 TLR2O60603 784 aa13.17□□□□□ -0.3
CHMP2A-202ENST00000596708 PPATQ06203 517 aa13.17□□□□□ -0.3
CHMP2A-202ENST00000596708 PPIL2Q13356 520 aa13.17□□□□□ -0.3
CHMP2A-202ENST00000596708 ATP2B3Q16720 1220 aa13.17□□□□□ -0.3
CHMP2A-202ENST00000596708 SLC4A8Q2Y0W8 1093 aa13.17□□□□□ -0.3
CHMP2A-202ENST00000596708 ATG9AQ7Z3C6 839 aa13.17□□□□□ -0.3
CHMP2A-202ENST00000596708 CDCA7LQ96GN5 454 aa13.17□□□□□ -0.3
CHMP2A-202ENST00000596708 RPAP1Q9BWH6 1393 aaPredicted RBP13.17□□□□□ -0.3
CHMP2A-202ENST00000596708 DOCK3Q8IZD9 2030 aa13.17□□□□□ -0.3
CHMP2A-202ENST00000596708 MYCP01106 439 aaPredicted RBP13.16□□□□□ -0.3
CHMP2A-202ENST00000596708 LDHBP07195 334 aaKnown RBP13.16□□□□□ -0.3
CHMP2A-202ENST00000596708 PRDX5P30044 214 aa13.16□□□□□ -0.3
CHMP2A-202ENST00000596708 INPP5BP32019 993 aa13.16□□□□□ -0.3
CHMP2A-202ENST00000596708 DIXDC1Q155Q3 683 aa13.16□□□□□ -0.3
CHMP2A-202ENST00000596708 CDC42EP5Q6NZY7 148 aa13.16□□□□□ -0.3
CHMP2A-202ENST00000596708 ZNF333Q96JL9 665 aa13.16□□□□□ -0.3
CHMP2A-202ENST00000596708 ZCCHC17Q9NP64 241 aaKnown RBP13.16□□□□□ -0.3
CHMP2A-202ENST00000596708 USP40Q9NVE5 1235 aa13.16□□□□□ -0.3
CHMP2A-202ENST00000596708 FBXO3Q9UK99 471 aa13.16□□□□□ -0.3
CHMP2A-202ENST00000596708 DAGLAQ9Y4D2 1042 aa13.16□□□□□ -0.3
CHMP2A-202ENST00000596708 CIAO1O76071 339 aa13.15□□□□□ -0.3
CHMP2A-202ENST00000596708 LACTBP83111 547 aaPredicted RBP13.15□□□□□ -0.3
CHMP2A-202ENST00000596708 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.15□□□□□ -0.3
CHMP2A-202ENST00000596708 ARHGAP39Q9C0H5 1083 aa13.15□□□□□ -0.3
CHMP2A-202ENST00000596708 DENND2AQ9ULE3 1009 aa13.15□□□□□ -0.3
CHMP2A-202ENST00000596708 NOB1Q9ULX3 412 aaKnown RBP13.15□□□□□ -0.3
CHMP2A-202ENST00000596708 HDAC5Q9UQL6 1122 aa13.15□□□□□ -0.3
CHMP2A-202ENST00000596708 PTPRFP10586 1907 aa13.15□□□□□ -0.3
CHMP2A-202ENST00000596708 NFIAQ12857 509 aa13.14□□□□□ -0.31
CHMP2A-202ENST00000596708 SH3TC2Q8TF17 1288 aa13.14□□□□□ -0.31
CHMP2A-202ENST00000596708 CPA4Q9UI42 421 aa13.14□□□□□ -0.31
CHMP2A-202ENST00000596708 PA2G4Q9UQ80 394 aaKnown RBP13.14□□□□□ -0.31
CHMP2A-202ENST00000596708 LRRFIP2Q9Y608 721 aaKnown RBP13.14□□□□□ -0.31
CHMP2A-202ENST00000596708 PDHXO00330 501 aa13.13□□□□□ -0.31
CHMP2A-202ENST00000596708 GNRH1P01148 92 aa13.13□□□□□ -0.31
CHMP2A-202ENST00000596708 IL15P40933 162 aaPredicted RBP13.13□□□□□ -0.31
CHMP2A-202ENST00000596708 PHKA1P46020 1223 aa13.13□□□□□ -0.31
CHMP2A-202ENST00000596708 ANKRD23Q86SG2 305 aa13.13□□□□□ -0.31
CHMP2A-202ENST00000596708 API5Q9BZZ5 524 aaKnown RBP13.13□□□□□ -0.31
CHMP2A-202ENST00000596708 ZNF112Q9UJU3 913 aa13.13□□□□□ -0.31
CHMP2A-202ENST00000596708 CENPFP49454 3210 aa13.13□□□□□ -0.31
CHMP2A-202ENST00000596708 PHIPQ8WWQ0 1821 aa13.12□□□□□ -0.31
CHMP2A-202ENST00000596708 SEMA3EO15041 775 aa13.12□□□□□ -0.31
CHMP2A-202ENST00000596708 HOXD10P28358 340 aa13.12□□□□□ -0.31
CHMP2A-202ENST00000596708 PSMC4P43686 418 aa13.12□□□□□ -0.31
CHMP2A-202ENST00000596708 PRMT2P55345 433 aa13.12□□□□□ -0.31
CHMP2A-202ENST00000596708 C17orf99Q6UX52 265 aa13.12□□□□□ -0.31
CHMP2A-202ENST00000596708 ZGPATQ8N5A5 531 aaKnown RBP13.12□□□□□ -0.31
CHMP2A-202ENST00000596708 FAM198AQ9UFP1 575 aa13.12□□□□□ -0.31
CHMP2A-202ENST00000596708 ABCF2Q9UG63 623 aa13.12□□□□□ -0.31
CHMP2A-202ENST00000596708 KCNH4Q9UQ05 1017 aa13.12□□□□□ -0.31
CHMP2A-202ENST00000596708 DOCK1Q14185 1865 aa13.12□□□□□ -0.31
CHMP2A-202ENST00000596708 SALL1Q9NSC2 1324 aa13.12□□□□□ -0.31
CHMP2A-202ENST00000596708 FMNL1O95466 1100 aaPredicted RBP13.11□□□□□ -0.31
CHMP2A-202ENST00000596708 CT47B1P0C2W7 299 aaPredicted RBP13.11□□□□□ -0.31
CHMP2A-202ENST00000596708 ADORA1P30542 326 aa13.11□□□□□ -0.31
CHMP2A-202ENST00000596708 TIMM10P62072 90 aa13.11□□□□□ -0.31
CHMP2A-202ENST00000596708 HABP4Q5JVS0 413 aaKnown RBP13.11□□□□□ -0.31
CHMP2A-202ENST00000596708 NOL9Q5SY16 702 aaKnown RBP13.11□□□□□ -0.31
CHMP2A-202ENST00000596708 CCDC102BQ68D86 513 aa13.11□□□□□ -0.31
CHMP2A-202ENST00000596708 ZSCAN29Q8IWY8 852 aaPredicted RBP13.11□□□□□ -0.31
CHMP2A-202ENST00000596708 ZFPM1Q8IX07 1006 aa13.11□□□□□ -0.31
CHMP2A-202ENST00000596708 ATAD5Q96QE3 1844 aa13.11□□□□□ -0.31
CHMP2A-202ENST00000596708 RGS3P49796 1198 aa13.1□□□□□ -0.31
CHMP2A-202ENST00000596708 DZIP1Q86YF9 867 aaKnown RBP13.1□□□□□ -0.31
CHMP2A-202ENST00000596708 SLF2Q8IX21 1173 aa13.1□□□□□ -0.31
CHMP2A-202ENST00000596708 TRMT2AQ8IZ69 625 aaKnown RBP13.1□□□□□ -0.31
CHMP2A-202ENST00000596708 RAET1EQ8TD07 263 aa13.1□□□□□ -0.31
CHMP2A-202ENST00000596708 MEIS3Q99687 375 aa13.1□□□□□ -0.31
CHMP2A-202ENST00000596708 COPRSQ9NQ92 184 aa13.1□□□□□ -0.31
CHMP2A-202ENST00000596708 PICK1Q9NRD5 415 aa13.1□□□□□ -0.31
CHMP2A-202ENST00000596708 SRRDQ9UH36 339 aa13.1□□□□□ -0.31
CHMP2A-202ENST00000596708 CXCL11O14625 94 aa13.09□□□□□ -0.31
CHMP2A-202ENST00000596708 ENTPD3O75355 529 aa13.09□□□□□ -0.31
CHMP2A-202ENST00000596708 OSBPP22059 807 aa13.09□□□□□ -0.31
CHMP2A-202ENST00000596708 CTGFP29279 349 aa13.09□□□□□ -0.31
CHMP2A-202ENST00000596708 PICALMQ13492 652 aa13.09□□□□□ -0.31
CHMP2A-202ENST00000596708 SPTY2D1Q68D10 685 aaPredicted RBP13.09□□□□□ -0.31
CHMP2A-202ENST00000596708 TRIM47Q96LD4 638 aa13.09□□□□□ -0.31
CHMP2A-202ENST00000596708 PARK7Q99497 189 aaKnown RBP13.09□□□□□ -0.31
CHMP2A-202ENST00000596708 IDI2Q9BXS1 227 aa13.09□□□□□ -0.31
CHMP2A-202ENST00000596708 ZHX2Q9Y6X8 837 aa13.09□□□□□ -0.31
CHMP2A-202ENST00000596708 MYPNQ86TC9 1320 aa13.09□□□□□ -0.31
CHMP2A-202ENST00000596708 HTTP42858 3142 aa13.08□□□□□ -0.31
CHMP2A-202ENST00000596708 MYO5AQ9Y4I1 1855 aaKnown RBP13.08□□□□□ -0.32
CHMP2A-202ENST00000596708 A0A1B0GUL7 405 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms