RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 CA12O43570 354 aa19.89■□□□□ 0.77
TRIM28-206ENST00000595974 CACNB3P54284 484 aa19.89■□□□□ 0.77
TRIM28-206ENST00000595974 PI16Q6UXB8 463 aa19.89■□□□□ 0.77
TRIM28-206ENST00000595974 ERICH6Q7L0X2 663 aa19.89■□□□□ 0.77
TRIM28-206ENST00000595974 TEPSINQ96N21 525 aa19.89■□□□□ 0.77
TRIM28-206ENST00000595974 TMEM39BQ9GZU3 492 aa19.89■□□□□ 0.77
TRIM28-206ENST00000595974 DOCK2Q92608 1830 aa19.88■□□□□ 0.77
TRIM28-206ENST00000595974 IREB2P48200 963 aaKnown RBP19.88■□□□□ 0.77
TRIM28-206ENST00000595974 RRP1P56182 461 aaKnown RBP19.88■□□□□ 0.77
TRIM28-206ENST00000595974 EAF2Q96CJ1 260 aaPredicted RBP19.88■□□□□ 0.77
TRIM28-206ENST00000595974 ZIC5Q96T25 663 aa19.88■□□□□ 0.77
TRIM28-206ENST00000595974 KIF23Q02241 960 aaPredicted RBP19.87■□□□□ 0.77
TRIM28-206ENST00000595974 CDC42EP5Q6NZY7 148 aa19.87■□□□□ 0.77
TRIM28-206ENST00000595974 REM2Q8IYK8 340 aaPredicted RBP19.87■□□□□ 0.77
TRIM28-206ENST00000595974 RHPN1Q8TCX5 695 aa19.87■□□□□ 0.77
TRIM28-206ENST00000595974 KIF1BPQ96EK5 621 aa19.87■□□□□ 0.77
TRIM28-206ENST00000595974 FAM163AQ96GL9 167 aaPredicted RBP19.87■□□□□ 0.77
TRIM28-206ENST00000595974 PRDM10Q9NQV6 1147 aa19.87■□□□□ 0.77
TRIM28-206ENST00000595974 TLR7Q9NYK1 1049 aaKnown RBP19.87■□□□□ 0.77
TRIM28-206ENST00000595974 MROH7-TTC4A0A0A0MT08 1334 aa19.86■□□□□ 0.77
TRIM28-206ENST00000595974 RAB11FIP3O75154 756 aa19.86■□□□□ 0.77
TRIM28-206ENST00000595974 HSPA8P11142 646 aaKnown RBP19.86■□□□□ 0.77
TRIM28-206ENST00000595974 MECOMQ03112 1051 aa19.86■□□□□ 0.77
TRIM28-206ENST00000595974 AACSQ86V21 672 aa19.86■□□□□ 0.77
TRIM28-206ENST00000595974 CDAN1Q8IWY9 1227 aa19.86■□□□□ 0.77
TRIM28-206ENST00000595974 HOOK2Q96ED9 719 aa19.86■□□□□ 0.77
TRIM28-206ENST00000595974 CCDC8Q9H0W5 538 aaPredicted RBP19.86■□□□□ 0.77
TRIM28-206ENST00000595974 FZD1Q9UP38 647 aa19.86■□□□□ 0.77
TRIM28-206ENST00000595974 RFX7Q2KHR2 1363 aa19.85■□□□□ 0.77
TRIM28-206ENST00000595974 IGSF3O75054 1194 aa19.85■□□□□ 0.77
TRIM28-206ENST00000595974 USP2O75604 605 aaPredicted RBP19.85■□□□□ 0.77
TRIM28-206ENST00000595974 GSTO1P78417 241 aa19.85■□□□□ 0.77
TRIM28-206ENST00000595974 CLASRPQ8N2M8 674 aaKnown RBP19.85■□□□□ 0.77
TRIM28-206ENST00000595974 NSUN4Q96CB9 384 aaKnown RBP19.85■□□□□ 0.77
TRIM28-206ENST00000595974 COL13A1Q5TAT6 717 aaPredicted RBP19.84■□□□□ 0.77
TRIM28-206ENST00000595974 TBC1D9Q6ZT07 1266 aa19.84■□□□□ 0.77
TRIM28-206ENST00000595974 ANKRD13AQ8IZ07 590 aa19.84■□□□□ 0.77
TRIM28-206ENST00000595974 FAM151AQ8WW52 585 aa19.84■□□□□ 0.77
TRIM28-206ENST00000595974 IL1RAPL2Q9NP60 686 aa19.84■□□□□ 0.77
TRIM28-206ENST00000595974 SNRKQ9NRH2 765 aa19.84■□□□□ 0.77
TRIM28-206ENST00000595974 USP40Q9NVE5 1235 aa19.84■□□□□ 0.77
TRIM28-206ENST00000595974 RAI14Q9P0K7 980 aa19.84■□□□□ 0.77
TRIM28-206ENST00000595974 LRP2BPQ9P2M1 347 aa19.84■□□□□ 0.77
TRIM28-206ENST00000595974 LDHCP07864 332 aa19.83■□□□□ 0.77
TRIM28-206ENST00000595974 BTDP43251 543 aa19.83■□□□□ 0.77
TRIM28-206ENST00000595974 LBX1P52954 281 aa19.83■□□□□ 0.77
TRIM28-206ENST00000595974 NFIAQ12857 509 aa19.83■□□□□ 0.77
TRIM28-206ENST00000595974 ZNF384Q8TF68 577 aa19.83■□□□□ 0.77
TRIM28-206ENST00000595974 SLC10A4Q96EP9 437 aa19.83■□□□□ 0.77
TRIM28-206ENST00000595974 CSRNP1Q96S65 589 aa19.83■□□□□ 0.77
TRIM28-206ENST00000595974 IDI2Q9BXS1 227 aa19.83■□□□□ 0.77
TRIM28-206ENST00000595974 SAGE1Q9NXZ1 904 aa19.83■□□□□ 0.77
TRIM28-206ENST00000595974 CDK5RAP2Q96SN8 1893 aa19.82■□□□□ 0.76
TRIM28-206ENST00000595974 FOCADQ5VW36 1801 aa19.82■□□□□ 0.76
TRIM28-206ENST00000595974 GPR75-ASB3A0A0A6YYF3 556 aa19.82■□□□□ 0.76
TRIM28-206ENST00000595974 APBB1O00213 710 aa19.82■□□□□ 0.76
TRIM28-206ENST00000595974 SPRYD7Q5W111 196 aa19.82■□□□□ 0.76
TRIM28-206ENST00000595974 DCAF15Q66K64 600 aa19.82■□□□□ 0.76
TRIM28-206ENST00000595974 CLMNQ96JQ2 1002 aa19.82■□□□□ 0.76
TRIM28-206ENST00000595974 CASP8AP2Q9UKL3 1982 aa19.81■□□□□ 0.76
TRIM28-206ENST00000595974 ENTPD3O75355 529 aa19.81■□□□□ 0.76
TRIM28-206ENST00000595974 MAP4K4O95819 1239 aaPredicted RBP19.81■□□□□ 0.76
TRIM28-206ENST00000595974 CYP2E1P05181 493 aaPredicted RBP19.81■□□□□ 0.76
TRIM28-206ENST00000595974 ZBTB48P10074 688 aaPredicted RBP19.81■□□□□ 0.76
TRIM28-206ENST00000595974 ZAP70P43403 619 aa19.81■□□□□ 0.76
TRIM28-206ENST00000595974 FAM198AQ9UFP1 575 aa19.81■□□□□ 0.76
TRIM28-206ENST00000595974 SREBF2Q12772 1141 aa19.8■□□□□ 0.76
TRIM28-206ENST00000595974 TCP10Q12799 353 aa19.8■□□□□ 0.76
TRIM28-206ENST00000595974 DDX55Q8NHQ9 600 aaKnown RBP eCLIP19.8■□□□□ 0.762e-7■■□□□ 11.6
TRIM28-206ENST00000595974 WNK4Q96J92 1243 aa19.8■□□□□ 0.76
TRIM28-206ENST00000595974 WDHD1O75717 1129 aaPredicted RBP19.79■□□□□ 0.76
TRIM28-206ENST00000595974 IFIT2P09913 472 aaKnown RBP19.79■□□□□ 0.76
TRIM28-206ENST00000595974 RGS3P49796 1198 aa19.79■□□□□ 0.76
TRIM28-206ENST00000595974 RHBDL3P58872 404 aa19.79■□□□□ 0.76
TRIM28-206ENST00000595974 MKRN3Q13064 507 aaKnown RBP19.79■□□□□ 0.76
TRIM28-206ENST00000595974 NAA16Q6N069 864 aaPredicted RBP19.79■□□□□ 0.76
TRIM28-206ENST00000595974 TSKSQ9UJT2 592 aa19.79■□□□□ 0.76
TRIM28-206ENST00000595974 CSADQ9Y600 493 aa19.79■□□□□ 0.76
TRIM28-206ENST00000595974 NPM3O75607 178 aaKnown RBP19.78■□□□□ 0.76
TRIM28-206ENST00000595974 MAP3K9P80192 1104 aa19.78■□□□□ 0.76
TRIM28-206ENST00000595974 VGLL4Q14135 290 aa19.78■□□□□ 0.76
TRIM28-206ENST00000595974 PPP1R3FQ6ZSY5 799 aaPredicted RBP19.78■□□□□ 0.76
TRIM28-206ENST00000595974 NOL10Q9BSC4 688 aaKnown RBP19.78■□□□□ 0.76
TRIM28-206ENST00000595974 ZNF341Q9BYN7 854 aa19.78■□□□□ 0.76
TRIM28-206ENST00000595974 LRRCC1Q9C099 1032 aa19.78■□□□□ 0.76
TRIM28-206ENST00000595974 PIH1D3Q9NQM4 214 aaKnown RBP19.78■□□□□ 0.76
TRIM28-206ENST00000595974 RNF186Q9NXI6 227 aa19.78■□□□□ 0.76
TRIM28-206ENST00000595974 COL2A1P02458 1487 aaPredicted RBP19.78■□□□□ 0.76
TRIM28-206ENST00000595974 MYH7P12883 1935 aa19.77■□□□□ 0.76
TRIM28-206ENST00000595974 MANSC4A6NHS7 340 aaPredicted RBP19.77■□□□□ 0.76
TRIM28-206ENST00000595974 TM4SF4P48230 202 aa19.77■□□□□ 0.76
TRIM28-206ENST00000595974 PPIL4Q8WUA2 492 aaKnown RBP eCLIP19.77■□□□□ 0.76
TRIM28-206ENST00000595974 WRNIP1Q96S55 665 aa19.77■□□□□ 0.76
TRIM28-206ENST00000595974 ATRNL1Q5VV63 1379 aa19.76■□□□□ 0.75
TRIM28-206ENST00000595974 TRPA1O75762 1119 aa19.76■□□□□ 0.75
TRIM28-206ENST00000595974 BAG3O95817 575 aa19.76■□□□□ 0.75
TRIM28-206ENST00000595974 TMED8Q6PL24 325 aaPredicted RBP19.76■□□□□ 0.75
TRIM28-206ENST00000595974 TNS4Q8IZW8 715 aa19.76■□□□□ 0.75
TRIM28-206ENST00000595974 ELP3Q9H9T3 547 aa19.76■□□□□ 0.75
TRIM28-206ENST00000595974 DDX4Q9NQI0 724 aaKnown RBP19.76■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms